from matlas.genome_data import *
from IPython.display import display
#from matlas.reports import display_interactive_matrices

project_root = "/mnt/lab_data/kundaje/msharmin/mouse_hem/from_labcluster/with_tfd"
oak_root = "/oak/stanford/groups/akundaje/msharmin/mouse_hem/from_labcluster/with_tfd"
srv_root = "/srv/scratch/msharmin/mouse_hem/with_tfd"
data_name = "full_mouse50"
modisco_root = "{0}/{1}/Naive_modisco2019_msharmin".format(oak_root, data_name)
modisco_root = "{0}/{1}/Naive_modisco2019".format(srv_root, data_name)
homer_root = "{0}/{1}/Naive_scans".format(srv_root, data_name)
model_root = "{0}/{1}/fineFactorized".format(srv_root, data_name)
reportfile= "{0}/filtering samples_MS2.xlsx".format(ANNOT_DIR)
sheetname = "filter23"

load data from labcluster

from matlas.reports import display_global_metadata
display_global_metadata(model_root, reportfile, sheetname)

Using TensorFlow backend.
2019-08-30 18:13:33,803 [WARNING] git-lfs not installed

Following link contains a sortable table of metadata information for each sample. Under each sample the number of replicates, the number of peaks and quality metrics are added. The table also contains deep learning model performance and the detailed report of TF-MoDISco patterns per sample.

Click here for Metadata

Sample Name	Group Name	Experiment Name	Experiment Group	auPRC	Calibrated Recall at 50% FDR	Imbalance Ratio in Test Data	Reports	Description
MPP;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 127767 93706 13.4528 36486766 rep2 127767 93706 10.7789 37447135	Other Immune Cells	ATAC	Casellas Lab	0.6045	0.215	0.0138	Details	MPP
naiveCD8;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 93898 70870 11.888 53664345	T cells	ATAC	Casellas Lab	0.5585	0.26	0.0095	Details	naive CD8
memT;CD4+;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 121952 95214 10.5762 55827708	T cells	ATAC	Casellas Lab	0.5908	0.211	0.0126	Details	CD25CCR6 DN CD4 (memory CD4+ T cell)
Th17;CD4+;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 117465 86042 10.6526 52508136	T cells	ATAC	Casellas Lab	0.6069	0.22	0.012	Details	Th17 CD4
NK_SPLND;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 97377 74703 13.1018 33564780 rep2 97377 74703 18.2143 21920687	Other Immune Cells	ATAC	Casellas Lab	0.6008	0.212	0.0109	Details	NK cells (spleen)
proB;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 105350 74111 8.781 59040357	B cells	ATAC	Casellas Lab	0.5962	0.21	0.0093	Details	proB cells
preB;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 96915 74938 10.4091 49787072	B cells	ATAC	Casellas Lab	0.6153	0.209	0.01	Details	preB cells
immatureB;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 108031 85381 12.7455 49661326	B cells	ATAC	Casellas Lab	0.5535	0.257	0.0114	Details	immature B cells
matureB;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 97614 76627 10.5385 50732280	B cells	ATAC	Casellas Lab	0.5881	0.232	0.0104	Details	mature B cells
MZ_B;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 124377 99878 13.1739 45590671	B cells	ATAC	Casellas Lab	0.5545	0.266	0.0132	Details	MZ B cells
B1_B;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 107238 84076 13.8031 46510157	B cells	ATAC	Casellas Lab	0.5533	0.225	0.0108	Details	B1 B cells
GC_B;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 134962 110759 10.2605 48983482	B cells	ATAC	Casellas Lab	0.6025	0.196	0.015	Details	GC B cells
plasmaB;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 152182 127101 11.5343 51659011	B cells	ATAC	Casellas Lab	0.5698	0.229	0.0178	Details	plasma cells
aB_LPS;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 55959 36089 13.6735 46341024	B cells	ATAC	Casellas Lab	0.6772	0.168	0.0057	Details	aB LPS
aB_LPS+IL4;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 68125 44658 12.5363 52652314	B cells	ATAC	Casellas Lab	0.6599	0.194	0.0065	Details	aB LPS+IL4
aB_LPS+IL21;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 43102 28780 13.762 45734749	B cells	ATAC	Casellas Lab	0.7158	0.175	0.0046	Details	aB LPS+IL21
aB_LSP+a_d_dextran;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 73497 48345 11.4401 65475232	B cells	ATAC	Casellas Lab	0.6644	0.192	0.0064	Details	aB LPS+a-d-dextran
aB_CD40+IL4;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 62573 43145 10.6735 82296493	B cells	ATAC	Casellas Lab	0.7064	0.157	0.0054	Details	aB aCD40+IL4
Mast;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 93774 56592 10.7667 57556873	Other Immune Cells	ATAC	Casellas Lab	0.5777	0.233	0.0072	Details	mast cells
BSPHL;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 174457 144811 26.825 12962452 rep2 174457 144811 28.2415 10487771 rep3 174457 144811 16.6966 33036477 rep4 174457 144811 23.1443 17160668	Other Immune Cells	ATAC	Casellas Lab	0.6121	0.212	0.021	Details	basophils
ESNPHL_ex-vivo_BlbC;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 54015 29912 17.4516 10330145 rep2 54015 29912 14.3317 20257446 rep3 54015 29912 17.4028 14821266 rep4 54015 29912 14.0641 22198926	Other Immune Cells	ATAC	Casellas Lab	0.6945	0.17	0.0044	Details	eosinphils (ex-vivo, BalbC)
ESNPHL_SPLND_BlbCA;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 59033 35812 11.6043 2890857 rep2 59033 35812 17.1991 18133477 rep3 59033 35812 10.7493 22921120	Other Immune Cells	ATAC	Casellas Lab	0.6563	0.208	0.005	Details	eosinophils (isolated from spleens, BalbC)
NTRPHL;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 65216 45787 10.5329 56446758	Other Immune Cells	ATAC	Casellas Lab	0.6356	0.202	0.0067	Details	neutrophils
Tfh_LCMV;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 96779 72877 10.9615 39246225	T cells	ATAC	Casellas Lab	0.5843	0.217	0.01	Details	Tfh from infected with LCMV
Tfh;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 95446 71809 11.5472 48537970	T cells	ATAC	Casellas Lab	0.6169	0.201	0.0106	Details	Tfh (CD4+CD44+CXCR5+PD1+CD25-) WT
Tfh_mut;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 110985 87324 11.8747 54846739	T cells	ATAC	Casellas Lab	0.607	0.214	0.0122	Details	Tfh (CD4+CD44+CXCR5+PD1+CD25-) Mut
aNonTfh;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 106947 85770 11.8858 55573249	T cells	ATAC	Casellas Lab	0.6142	0.208	0.0115	Details	activated non-Tfh (CD4+CD44+CXCR5-PD1-CD25-) WT
aNonTfh_mut;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 88536 69498 13.7416 45981127	T cells	ATAC	Casellas Lab	0.6141	0.205	0.0098	Details	activated non-Tfh (CD4+CD44+CXCR5-PD1-CD25-) MUT
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 112158 87351 11.9236 50168851	T cells	ATAC	Casellas Lab	0.599	0.206	0.0125	Details	Tfr (CD4+CD44+CXCR5+PD1+CD25+) WT
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 112546 89323 11.5618 59313024	T cells	ATAC	Casellas Lab	0.609	0.195	0.012	Details	Tfr (CD4+CD44+CXCR5+PD1+CD25+) MUT
naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 87310 67230 13.0318 47277627	T cells	ATAC	Casellas Lab	0.5549	0.243	0.0092	Details	naive CD4+ T (CD4+ CD44-CD62L- CD25-) WT
naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 90752 70942 13.0972 48213104	T cells	ATAC	Casellas Lab	0.5753	0.241	0.0096	Details	naive CD4+ T (CD4+ CD44-CD62L- CD25-) MUT
largeDPprecrsr;CD4+CD8+CD69-;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 95232 75178 9.7474 60579149	T cells	ATAC	Casellas Lab	0.6198	0.186	0.0092	Details	CD4+CD8+ CD69lo large (DP precursors)
smallDPprecrsor;CD4+CD8+CD69-;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 117544 96803 13.0451 49612619	T cells	ATAC	Casellas Lab	0.5791	0.232	0.0128	Details	CD4+CD8+ CD69lo small (DP precursors)
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 62716 41232 7.2324 40080775 rep2 62716 41232 19.7901 8939046	T cells	ATAC	Casellas Lab	0.5843	0.228	0.0056	Details	CD4+CD8int TCRhi CD69hi CD24hi (B2m def mice)
CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 96369 72561 10.4672 47535378	T cells	ATAC	Casellas Lab	0.5846	0.221	0.0096	Details	CD4+CD8-TCRhi CD69hi CD24hi CD25-(B2m def mice)
CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 106135 85197 12.9989 46290913	T cells	ATAC	Casellas Lab	0.5791	0.213	0.0111	Details	CD4+CD8-TCRhi CD69lo CD24lo CD25- (B2m def mice)
CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 113590 90280 13.4022 49431426	T cells	ATAC	Casellas Lab	0.5656	0.22	0.0115	Details	CD4+CD8int TCRhi CD69hi CD24hi (MHCII def mice)
CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 132512 108189 14.2814 46914750	T cells	ATAC	Casellas Lab	0.5795	0.227	0.014	Details	CD4-CD8+ TCRhi CD69hi CD24hi (MHCII def mice)
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 122509 100469 14.3568 47005251	T cells	ATAC	Casellas Lab	0.5823	0.214	0.0132	Details	CD4-CD8+ TCRhi CD69lo CD24lo (MHCII def mice)
CD4+CD8-TCR+CD25+Foxp3-;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 120668 90810 11.0764 54525714	T cells	ATAC	Casellas Lab	0.5646	0.235	0.0114	Details	CD4+CD8-TCRhi CD25+ Foxp3-
CD4+CD8-TCR+CD25-Foxp3+;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 109043 83403 16.1576 9895974 rep2 109043 83403 11.3524 40345667	T cells	ATAC	Casellas Lab	0.5724	0.234	0.0107	Details	CD4+CD8-TCRhi CD25-Foxp3+
CD4+CD8-TCR+CD25+Foxp3+;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 122169 95412 12.7609 47492067	T cells	ATAC	Casellas Lab	0.5739	0.23	0.0124	Details	CD4+CD8-TCRhi CD25+ Foxp3+
DC_BMD;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 172002 124481 14.6972 19958299 rep2 172002 124481 18.7634 27423912	Other Immune Cells	ATAC	Casellas Lab	0.6392	0.206	0.0186	Details	BMDCs(dendritic cell)
MCRPHG;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 172038 135395 11.9041 61426065	Other Immune Cells	ATAC	Casellas Lab	0.6318	0.211	0.0194	Details	macrophage
Erythroblast;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 65240 52690 10.2005 43333228	Other Immune Cells	ATAC	Casellas Lab	0.6192	0.185	0.0068	Details	Erythroblasts
DP;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 130523 107456 13.1809 51321601	T cells	ATAC	Casellas Lab	0.583	0.217	0.0136	Details	DP
DP3a;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 154652 115986 11.8894 41521294	T cells	ATAC	Casellas Lab	0.5771	0.238	0.0157	Details	DN3a
DP3b;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 135393 99753 9.2032 56525046	T cells	ATAC	Casellas Lab	0.582	0.247	0.013	Details	DN3b
ISP;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 127450 94657 10.6101 51169699	T cells	ATAC	Casellas Lab	0.5958	0.234	0.0131	Details	ISP (Immature single positive)
ES;E14;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 179336 106127 10.4351 45721770	ES cells and embryonic tissues	ATAC	Casellas Lab	0.5586	0.252	0.0145	Details	ES cells (E14)
ES;MEF;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 171014 109817 11.4467 53388578	ES cells and embryonic tissues	ATAC	Casellas Lab	0.6632	0.192	0.0155	Details	MEFs
SML_INTSTN;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 121670 77242 13.4635 10542151 rep2 121670 77242 9.4448 44548119	Other Tissues	ATAC	Casellas Lab	0.5977	0.214	0.0107	Details	Small Intestine
LRG_INTSTN;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 137857 92049 17.4863 6685930 rep2 137857 92049 13.2097 14361249 rep3 137857 92049 11.0875 28229693 rep4 137857 92049 12.1545 18107472	Other Tissues	ATAC	Casellas Lab	0.5934	0.194	0.0128	Details	Large Intestine
LNG;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 97256 53090 7.1397 66919568 rep2 97256 53090 14.3428 18521142	Other Tissues	ATAC	Casellas Lab	0.6613	0.163	0.0072	Details	Lung
Muscle;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 100569 70057 8.4552 65518677	Other Tissues	ATAC	Casellas Lab	0.6301	0.212	0.0086	Details	Muscle
Heart;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 130707 82136 21.4535 5954075 rep2 130707 82136 13.2306 38502670 rep3 130707 82136 15.6391 23641085	Other Tissues	ATAC	Casellas Lab	0.6195	0.21	0.0116	Details	Heart
Adipose;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 59064 36655 10.5352 18574604 rep2 59064 36655 6.36 53206816	Other Tissues	ATAC	Casellas Lab	0.7077	0.163	0.005	Details	Adipose
Mammary;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 67951 35799 7.8519 14580227 rep2 67951 35799 6.7582 35160853	Other Tissues	ATAC	Casellas Lab	0.6427	0.189	0.0052	Details	Mammary tissue
Adrenal;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 179402 121081 13.7753 56511037	Other Tissues	ATAC	Casellas Lab	0.6136	0.208	0.0174	Details	Adrenal
testis;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 48630 30567 6.2186 54487274	Other Tissues	ATAC	Casellas Lab	0.7878	0.126	0.0046	Details	testis
placenta;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 116997 53949 12.168 4108288 rep2 116997 53949 8.3481 39863152 rep3 116997 53949 11.1197 10767211	Other Tissues	ATAC	Casellas Lab	0.6163	0.201	0.0084	Details	placenta
SPNL_CHRD;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 49343 27701 7.6051 50961404	Neural Cells and Tissues	ATAC	Casellas Lab	0.692	0.199	0.0041	Details	spinal cord
STMCH;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 44310 25214 9.2288 6255655 rep2 44310 25214 6.9103 46947480	Other Tissues	ATAC	Casellas Lab	0.6555	0.142	0.0036	Details	stomach
PNCRS;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 36020 20104 11.3049 4730481 rep2 36020 20104 7.4276 42092454	Other Tissues	ATAC	Casellas Lab	0.6528	0.21	0.003	Details	pancreas
eye-NRL_RTN;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 44551 31029 8.2759 46621271	Neural Cells and Tissues	ATAC	Casellas Lab	0.7261	0.166	0.0041	Details	Eye- Neural retina
NRV;Eye-OPTC;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 70145 43626 5.378 124434468	Neural Cells and Tissues	ATAC	Casellas Lab	0.6751	0.174	0.0065	Details	Eye- Optic nerve
BRN;OLFTRY_BLB;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 96105 54376 9.2452 50055506	Neural Cells and Tissues	ATAC	Casellas Lab	0.6265	0.227	0.0079	Details	Brain- Olfactory Bulb
BRN;FRNTL_CRTX;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 109956 51372 7.1093 52810759	Neural Cells and Tissues	ATAC	Casellas Lab	0.5957	0.23	0.0076	Details	Brain- Frontal Cortex
BRN;PTMN;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 144043 83670 10.2875 54748971	Neural Cells and Tissues	ATAC	Casellas Lab	0.6488	0.227	0.0123	Details	Brain- Putamen
BRN;MDL_OBLNGT;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 87447 47590 9.4114 11977761 rep2 87447 47590 11.4626 41196844	Neural Cells and Tissues	ATAC	Casellas Lab	0.671	0.182	0.007	Details	Brain- Medulla Oblongata
BRN;SNSR_MTR_CRTX;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 153500 86137 10.2405 50258352	Neural Cells and Tissues	ATAC	Casellas Lab	0.5747	0.258	0.0131	Details	Brain- Sensorimotor Cortex
BRN;CRBLM;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 74560 47910 10.9686 47061682	Neural Cells and Tissues	ATAC	Casellas Lab	0.6228	0.242	0.0071	Details	Brain- Cerebellum
restingB;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 45129 31117 13.0253 54480499	B cells	ATAC	Casellas Lab	0.7228	0.16	0.0049	Details	restingB
aB;CD180;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 53221 34951 13.0333 55180944	B cells	ATAC	Casellas Lab	0.6846	0.176	0.0055	Details	aBCD180
LNG_TRM_HSC;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 113997 77973 7.3476 33180406 rep2 113997 77973 24.5793 13293108	Other Immune Cells	ATAC	Casellas Lab	0.6176	0.195	0.0112	Details	Long Term HSC
SHRT_TRM_HSC;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 133030 96939 10.2235 20036786 rep2 133030 96939 17.6945 25151359	Other Immune Cells	ATAC	Casellas Lab	0.6075	0.195	0.0139	Details	Short Term HSC
gamma_delta_TCR;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 106146 73166 11.5746 52915643	T cells	ATAC	Casellas Lab	0.6352	0.196	0.0107	Details	gamma delta TCR wt
gamma_delta_TCR_MCR;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 117583 83548 11.7284 48958645	T cells	ATAC	Casellas Lab	0.6226	0.195	0.0123	Details	gamma delta TCR Marco
gamma_delta_TCR_M-S-;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 70127 47441 7.9737 60333891	T cells	ATAC	Casellas Lab	0.6387	0.208	0.0061	Details	gamma delta TCR M/S -/-
NK;IL2+IL12+;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 72685 52858 15.7584 9397828 rep2 72685 52858 11.9275 40619930	Other Immune Cells	ATAC	Casellas Lab	0.5992	0.213	0.0074	Details	NK (+IL2+IL12)
ILC2precrsr;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 135065 109925 12.5716 46970013	Other Immune Cells	ATAC	Casellas Lab	0.5847	0.207	0.0151	Details	ILC2 precursor
NCR+ILC3;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 124352 102656 11.3907 58606297	Other Immune Cells	ATAC	Casellas Lab	0.5465	0.244	0.0146	Details	NCR+ILC3
ILC2_Nippo;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 123016 95643 10.99 51626771	Other Immune Cells	ATAC	Casellas Lab	0.5752	0.226	0.014	Details	ILC2 (Nippo infected)
ILC1;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 108852 89328 12.2037 47688263	Other Immune Cells	ATAC	Casellas Lab	0.5858	0.207	0.0134	Details	ILC1
NCR+ILC3+IL23;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 114196 82596 21.3378 12755662 rep2 114196 82596 13.8666 36946603	Other Immune Cells	ATAC	Casellas Lab	0.5675	0.22	0.0122	Details	NCR+ILC3+IL23
ILC2;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 126295 96279 14.1095 29629585 rep2 126295 96279 16.6618 16888192	Other Immune Cells	ATAC	Casellas Lab	0.5756	0.21	0.0137	Details	ILC2
Th2_nippo;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 127578 101506 10.2231 58219367	T cells	ATAC	Casellas Lab	0.5825	0.211	0.0139	Details	Th2 (Nippo infected)
aB_LPS+IL4_24h;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 157830 124587 6.9236 154544859	B cells	ATAC	Casellas Lab	0.606	0.215	0.0084	Details	Act B cell 24h
aB_LPS+IL4+Oligomycin_24h;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 177685 139306 6.7821 145271434	B cells	ATAC	Casellas Lab	0.5338	0.242	0.0109	Details	Act B cell 24h with oligomycin
CH12_QNTPLE;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 82059 54250 12.4137 28786451 rep2 82059 54250 17.6827 18380175	Cancer or Immortalized cells	ATAC	Casellas Lab	0.5918	0.205	0.0075	Details	ch12 with quintuple mt
wCH12;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 94226 61670 12.4737 28679103 rep2 94226 61670 15.8856 21608006	Cancer or Immortalized cells	ATAC	Casellas Lab	0.5868	0.23	0.0083	Details	ch12 wt
CH12;med14;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 110526 85159 6.3964 195773338	Cancer or Immortalized cells	ATAC	Casellas Lab	0.6213	0.217	0.0049	Details	ch12 med14 mt
wCH12_drug;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 213347 174461 4.9591 207358221	Cancer or Immortalized cells	ATAC	Casellas Lab	0.5027	0.275	0.0089	Details	ch12 wt with drug
CLP;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 138912 89699 12.2998 11970240 rep2 138912 89699 11.8214 16820059 rep3 138912 89699 12.2571 15522098	Other Immune Cells	ATAC	GEO	0.5653	0.258	0.0126	Details	CLP
mem_precrsrT_SPLND;CD8+;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 114822 89645 15.7869 24387106 rep2 114822 89645 15.6373 26612368 rep3 114822 89645 12.7975 33269103	T cells	ATAC	GEO	0.5971	0.217	0.0127	Details	Spleen CD8+ T cell(MPEC)
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 128196 102811 14.8935 22571246 rep2 128196 102811 15.4611 22399883	Other Immune Cells	ATAC	GEO	0.5798	0.214	0.0149	Details	NK cells (liver), CD19-CD3ε-NKp46+DX5+Trail-
NTRPHL;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 55808 34115 5.7693 60712105 rep2 55808 34115 5.4203 68221410	Other Immune Cells	ATAC	GEO	0.5895	0.253	0.004	Details	Neutrophils(wt)
ES;J1;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 140739 85659 8.9196 54035749	ES cells and embryonic tissues	ATAC	GEO	0.6499	0.314	0.0103	Details	J1 embryonic stem cells
ES;E14;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 194614 118824 12.5591 17916047 rep2 194614 118824 12.269 14528181 rep3 194614 118824 11.4434 13200179 rep4 194614 118824 9.7165 11893788	ES cells and embryonic tissues	ATAC	GEO	0.5846	0.233	0.0157	Details	E14 ES cells
ES;F1216;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 148115 95272 9.1871 75743004	ES cells and embryonic tissues	ATAC	GEO	0.6992	0.144	0.0107	Details	mouse embryonic stem cells (F1216)
ES;129SV_Jae_C57BL6J;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 108458 64365 9.9108 44988989	ES cells and embryonic tissues	ATAC	GEO	0.669	0.205	0.0091	Details	ESC(129SV/Jae/C57BL6J)
ES;v6.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 229299 140341 8.9389 79632607	ES cells and embryonic tissues	ATAC	GEO	0.6322	0.216	0.0154	Details	Embryonic Stem Cells(v6.5)
Mammary_GLND;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 191456 139863 22.0502 20992560 rep2 191456 139863 25.297 8698985 rep3 191456 139863 16.2715 32838771 rep4 191456 139863 15.6667 43058729 rep5 191456 139863 10.3609 29442898	Other Tissues	ATAC	GEO	0.6575	0.195	0.0219	Details	Mammary Gland(WT,Basal Mammary Epithelial Cells)
RTN;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 149877 108264 16.881 39257849 rep2 149877 108264 14.309 47859418	Neural Cells and Tissues	ATAC	GEO	0.6368	0.185	0.014	Details	WT retina
CRBL_GRNL_Precrsr;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 234629 167668 11.3312 80617334 rep2 234629 167668 14.731 37313774 rep3 234629 167668 14.7562 44515539	Neural Cells and Tissues	ATAC	GEO	0.6606	0.206	0.0237	Details	cerebellar granule cell precursors(wt)
ILC2+IL33+IL25;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 116228 84281 13.0011 39220034 rep2 116228 84281 13.2307 41928394	Other Immune Cells	ATAC	GEO	0.5603	0.231	0.0121	Details	ILC2+IL33+IL25
ILC1;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 97039 73602 11.7339 32132472 rep2 97039 73602 15.5455 27711464	Other Immune Cells	ATAC	GEO	0.5906	0.209	0.0104	Details	ILC1(WT)
ILC2;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 125814 96194 15.0497 23960844 rep2 125814 96194 17.0949 22004918	Other Immune Cells	ATAC	GEO	0.5957	0.196	0.0132	Details	ILC2(WT)
ILC3;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 141957 109580 13.8643 31128555 rep2 141957 109580 13.1477 32554467	Other Immune Cells	ATAC	GEO	0.6104	0.192	0.0153	Details	ILC3(WT)
ILC1_AbxGRMFree;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 83210 61208 16.4294 21962388 rep2 83210 61208 10.3344 29522650	Other Immune Cells	ATAC	GEO	0.5801	0.211	0.0086	Details	ILC1_AbxGermFree
ILC2_AbxGRMFree;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 119396 88308 12.6387 23472356 rep2 119396 88308 15.0858 20844285	Other Immune Cells	ATAC	GEO	0.584	0.184	0.0121	Details	ILC2_AbxGermFree
ILC3_AbxGRMFree;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 129986 103738 13.5265 23566898 rep2 129986 103738 16.3446 22661367	Other Immune Cells	ATAC	GEO	0.5876	0.207	0.0145	Details	ILC3_AbxGermFree
naiveT;CD8+;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 151888 129338 12.2476 23440401 rep2 151888 129338 12.4623 17943728 rep3 151888 129338 13.7314 18780804	T cells	ATAC	GEO	0.5965	0.201	0.0153	Details	Naive CD8+ T cell
T_LCMV;CD8+;D8;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 122081 95667 15.8216 31883735 rep2 122081 95667 15.9321 34396698	T cells	ATAC	GEO	0.5885	0.224	0.0141	Details	CD8 Tcells(day8 post infection LCMV-Armstrong)
T_LCMV;CD8+;D33;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 133682 103460 16.9754 36063968 rep2 133682 103460 17.0117 36283469	T cells	ATAC	GEO	0.5553	0.247	0.0148	Details	CD8 Tcells (day33 post infection LCMV-Armstrong)
T_LCMV;CD8+;D35;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 109104 86584 17.6767 31620098 rep2 109104 86584 19.6993 32419973	T cells	ATAC	GEO	0.581	0.237	0.0132	Details	CD8 Tcells(day35 post infection LCMV)
TEff_SPLND;CD8+;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 115658 90804 16.9754 22746090 rep2 115658 90804 17.3994 19209048 rep3 115658 90804 15.4441 23769809	T cells	ATAC	GEO	0.5731	0.218	0.0129	Details	Spleen CD8+ T cell (Effector)
TExh_SPLND;CD8+;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 119388 99265 15.3738 19562267 rep2 119388 99265 14.5692 27079728 rep3 119388 99265 18.087 23108080	T cells	ATAC	GEO	0.5872	0.217	0.0137	Details	Spleen CD8+ T cell (Exhausted)
TSLEC_SPLND;CD8+A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 113741 88795 16.0087 22643370 rep2 113741 88795 16.2777 23506852 rep3 113741 88795 15.2524 23831594	T cells	ATAC	GEO	0.5924	0.207	0.0124	Details	Spleen CD8+ T cell(SLEC)
naiveT;trnsgncTCR_SV40-I_CD8;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 136492 116981 13.4942 48266522 rep2 136492 116981 14.0674 49016170 rep3 136492 116981 14.7601 42694779	T cells	ATAC	GEO	0.5992	0.217	0.016	Details	naive transgenic TCR SV40-I CD8 T cells
Teff;TCR_SV40-I_CD8+;D5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 141142 119215 12.5993 53330407 rep2 141142 119215 13.8304 46965490 rep3 141142 119215 11.0733 61273401	T cells	ATAC	GEO	0.6184	0.21	0.0163	Details	D5 effector TCR SV40-I CD8 T cells
Teff;TCR_SV40-I_CD8+;D7;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 121716 103829 15.1842 45712829 rep2 121716 103829 13.4051 45893445	T cells	ATAC	GEO	0.6094	0.204	0.0147	Details	D7 effector TCR SV40-I CD8 T cells
cntrl_memT;TCR_SV40-I_CD8+;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 126804 106810 14.6234 51186294 rep2 126804 106810 15.6272 45250390	T cells	ATAC	GEO	0.6141	0.217	0.0146	Details	central memory TCR SV40-I CD8 T cells
T_MLD;TCR_SV40-I_CD8+;D5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 126667 100738 12.187 55112228 rep2 126667 100738 9.8289 63092989	T cells	ATAC	GEO	0.6243	0.212	0.0138	Details	TCR SV40-I CD8 T cells isolated D5 from early malignant lesions
T_MLD;TCR_SV40-I_CD8+;D7;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 131979 108811 13.2918 54757704 rep2 131979 108811 11.9752 51409433	T cells	ATAC	GEO	0.6155	0.211	0.016	Details	TCR SV40-I CD8 T cells isolated D7 from early malignant lesions
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 152605 129862 10.9832 63670326 rep2 152605 129862 11.78 58977085 rep3 152605 129862 11.3813 59759752	T cells	ATAC	GEO	0.6289	0.201	0.0173	Details	TCR SV40-I CD8 T cells isolated D14 from early malignant lesions
T_MLD;TCR_SV40-I_CD8+;D21;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 127762 110669 12.7815 53736231 rep2 127762 110669 12.224 58457036 rep3 127762 110669 11.185 63864754	T cells	ATAC	GEO	0.6223	0.198	0.0155	Details	TCR SV40-I CD8 T cells isolated D21 from early malignant lesions
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 144384 125458 13.94 50792841 rep2 144384 125458 12.908 62322329 rep3 144384 125458 13.8081 49122581	T cells	ATAC	GEO	0.6154	0.191	0.0172	Details	TCR SV40-I CD8 T cells isolated D28 from early malignant lesions
T_MLD;TCR_SV40-I_CD8+;D35;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 141549 124397 13.8615 49671714 rep2 141549 124397 11.2771 63882485 rep3 141549 124397 13.3607 51596115	T cells	ATAC	GEO	0.6231	0.184	0.0175	Details	TCR SV40-I CD8 T cells isolated D35 from early malignant lesions
T_MLD;TCR_SV40-I_CD8+;D60;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 125537 110319 12.5022 58196150 rep2 125537 110319 10.6052 66940675 rep3 125537 110319 11.5013 64846853	T cells	ATAC	GEO	0.6223	0.199	0.0148	Details	TCR SV40-I CD8 T cells isolated D60 from early malignant lesions
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 116731 90085 9.4513 69985949 rep2 116731 90085 8.3189 68602194 rep3 116731 90085 10.6385 47602259	T cells	ATAC	GEO	0.6219	0.212	0.012	Details	memory TCR SV40-I CD8 T cells isolated D7 from established tumors (with listeria immunization)
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 102396 81963 10.8446 53273855 rep2 102396 81963 10.418 55066047	T cells	ATAC	GEO	0.619	0.211	0.0115	Details	memory TCR SV40-I CD8 T cells isolated D14 from established tumors (with listeria immunization)
memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 140113 122612 12.7257 61305408 rep2 140113 122612 12.6383 64556928 rep3 140113 122612 13.4505 48847348	T cells	ATAC	GEO	0.6176	0.202	0.0164	Details	memory TCR SV40-I CD8 T cells isolated D35 from established tumors (with listeria immunization)
memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 156017 136627 11.9143 60484558 rep2 156017 136627 12.4275 54063408 rep3 156017 136627 12.2644 52284159	T cells	ATAC	GEO	0.6229	0.206	0.0182	Details	memory TCR SV40-I CD8 T cells isolated D7 from established tumors (without listeria immunization)
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 138257 118963 13.66 49030222 rep2 138257 118963 11.2902 59405194 rep3 138257 118963 12.2752 53376972	T cells	ATAC	GEO	0.6172	0.197	0.0165	Details	memory TCR SV40-I CD8 T cells isolated D14 from established tumors (without listeria immunization)
iNKT;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 127059 96922 15.6394 19703415 rep2 127059 96922 18.6884 16390733 rep3 127059 96922 11.6282 31918058	Other Immune Cells	ATAC	GEO	0.5869	0.228	0.0135	Details	Invariant NKT (iNKT) cells
aB;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 171004 137135 11.9732 54039089 rep2 171004 137135 8.1664 83443705	B cells	ATAC	GEO	0.575	0.229	0.0167	Details	Act B cell
prePLSM_B;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 143684 110569 17.3414 32240553 rep2 143684 110569 14.953 35166312	B cells	ATAC	GEO	0.5913	0.198	0.015	Details	Pre-PB
B_SPLND;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 52733 32568 8.1848 24806682 rep2 52733 32568 7.168 29118676	B cells	ATAC	GEO	0.6035	0.222	0.005	Details	Splenic B cell
preB_BMD;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 157798 129026 18.8433 30832398 rep2 157798 129026 18.6649 30807421	B cells	ATAC	GEO	0.6207	0.209	0.0172	Details	Bone marrow derived pre-B cell
B;B220_CD43;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 155845 119051 10.106 69280898 rep2 155845 119051 11.2553 51624811	B cells	ATAC	GEO	0.621	0.209	0.0162	Details	B220+CD43+ B cells
MCRPHG_BMD.UnStmltd;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 69293 42357 10.6363 11197064 rep2 69293 42357 9.9308 17610779 rep3 69293 42357 7.6328 26187752	Other Immune Cells	ATAC	GEO	0.584	0.248	0.0062	Details	bone marrow-derived macrophages (Unstimulated)
MCRPHG_BMD.LPD_Stmltd;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 116765 75199 13.2127 14651988 rep2 116765 75199 9.3591 8537967 rep3 116765 75199 14.521 17628648 rep4 116765 75199 7.1732 14571958	Other Immune Cells	ATAC	GEO	0.5825	0.228	0.0111	Details	bone marrow-derived macrophages(Lipid A stimulation 120min)
Erythroid;Ter119+;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 45623 33619 9.5158 47165654 rep2 45623 33619 9.116 51530014	Other Immune Cells	ATAC	GEO	0.6228	0.212	0.0045	Details	Ter119+ Erythroid cells
AML;AE9a;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 191860 154261 8.7801 69330884 rep2 191860 154261 10.3657 58011754	Cancer or Immortalized cells	ATAC	GEO	0.5125	0.271	0.02	Details	Ckit Mice cells AE9a (AML)
DC_LPS;6h;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 180765 128537 12.0705 53928405	Other Immune Cells	ATAC	GEO	0.6393	0.203	0.0191	Details	dendritic cell(100 ng/mL Lipopolysaccharide, 6hours)
DC_LPS;2h;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 176969 124542 6.891 81780324 rep2 176969 124542 12.5583 50076735	Other Immune Cells	ATAC	GEO	0.6374	0.191	0.0199	Details	dendritic cell(100 ng/mL Lipopolysaccharide, 2hours)
DC_pBMD;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 154469 103456 14.5328 24931180 rep2 154469 103456 16.7485 21897388	Other Immune Cells	ATAC	GEO	0.6119	0.238	0.0166	Details	Primary bone marrow derived dendritic cells (DCs, control vector)
ENDRM_ESD;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 160378 104327 8.7431 63663067 rep2 160378 104327 7.6392 84169366	Cancer or Immortalized cells	ATAC	GEO	0.6679	0.25	0.013	Details	ES_derived Definitive Endoderm
ROD_PHT_RCPTR;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 101710 80801 18.3134 27113832 rep2 101710 80801 15.8442 33786975	Neural Cells and Tissues	ATAC	GEO	0.6354	0.163	0.0107	Details	rod photoreceptors
ROD_PHT_RCPTR_RTN;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 114373 93937 17.7255 32340084 rep2 114373 93937 18.2174 30511208	Neural Cells and Tissues	ATAC	GEO	0.6111	0.175	0.0118	Details	WT rod photoreceptors,retina
GCN_PHT_RCPTR;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 105220 73205 12.7779 49061603 rep2 105220 73205 13.854 34841283	Neural Cells and Tissues	ATAC	GEO	0.6379	0.21	0.0106	Details	green cone photoreceptors
BL_CN_PHT_RCPTR;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 107979 81948 15.8234 33944189 rep2 107979 81948 18.2086 33564826	Neural Cells and Tissues	ATAC	GEO	0.6652	0.206	0.0111	Details	blue cone photoreceptors/NrlKO
CN_PHT_RCPTR;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 148954 114410 21.7676 30932642 rep2 148954 114410 23.1075 27082405	Neural Cells and Tissues	ATAC	GEO	0.6428	0.235	0.0146	Details	WT cone photoreceptors
npES;3rd_Rhmbmr_delA;E8.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 243444 164153 10.5742 76054588 rep2 243444 164153 9.3753 80815547	ES cells and embryonic tissues	ATAC	GEO	0.6729	0.202	0.0203	Details	embryo_3rd rhombomere (E8.5, deltaA)
wES;3rd_Rhmbmr;E8.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 254819 172632 11.0765 77606002 rep2 254819 172632 11.7289 70970845	ES cells and embryonic tissues	ATAC	GEO	0.6627	0.191	0.0243	Details	embryo_3rd rhombomere (E8.5, wt)
npES;3rd_Rhmbmr_delC;E8.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 239179 157388 9.8585 82301645 rep2 239179 157388 9.0821 92236001	ES cells and embryonic tissues	ATAC	GEO	0.6633	0.208	0.019	Details	embryo_3rd rhombomere (E8.5, deltaC)
npES;5th_Rhmbmr_delC;E8.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 187901 118679 7.2278 97947961 rep2 187901 118679 6.3449 104744008	ES cells and embryonic tissues	ATAC	GEO	0.6592	0.191	0.011	Details	embryo_5th rhombomere(E8.5, deltaC)
wES;5th_Rhmbmr;E9.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 191346 132393 8.7151 84805477 rep2 191346 132393 10.1416 73957427	ES cells and embryonic tissues	ATAC	GEO	0.6705	0.189	0.0153	Details	embryo_5th rhombomere(e9.5, wt)
wES;5th_Rhmbmr;E8.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 246770 165567 10.1033 80580630 rep2 246770 165567 10.1086 85157340	ES cells and embryonic tissues	ATAC	GEO	0.6487	0.207	0.0204	Details	embryo_5th rhombomere(E8.5, WT)
npES;5th_Rhmbmr_delA;E8.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 232427 156966 11.076 69513527 rep2 232427 156966 9.0665 89445214	ES cells and embryonic tissues	ATAC	GEO	0.6683	0.196	0.0192	Details	embryo_5th rhombomere (E8.5. deltaA)
wES;posterior;1;E9.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 178892 122305 10.1671 71343492 rep2 178892 122305 7.7857 85365160	ES cells and embryonic tissues	ATAC	GEO	0.6892	0.166	0.0143	Details	embryo_posterior part (E9.5, WT)
wES;posterior;2;E9.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 222063 152002 9.5002 83358726 rep2 222063 152002 10.7025 75308816	ES cells and embryonic tissues	ATAC	GEO	0.6719	0.178	0.0185	Details	embryo_posterior part (E9.5, WT)
wES;posterior;1;E8.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 202635 132207 8.7015 93835801 rep2 202635 132207 6.8151 88143698	ES cells and embryonic tissues	ATAC	GEO	0.6557	0.2	0.0134	Details	embryo_posterior part (E8.5, wt)
npES;posterior_delA;E8.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 221379 150513 10.4672 82316020 rep2 221379 150513 7.9695 88937877	ES cells and embryonic tissues	ATAC	GEO	0.6758	0.18	0.0176	Details	embryo_posterior part(E8.5, deltaA)
npES;posterior_delC;E8.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 223596 148705 10.0242 85350123 rep2 223596 148705 7.6531 105141624	ES cells and embryonic tissues	ATAC	GEO	0.6712	0.206	0.0168	Details	embryo_posterior part (E8.5, deltaC)
SKN_EPTHL;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 187944 145059 9.8801 71745379	Other Tissues	ATAC	GEO	0.5873	0.233	0.0192	Details	adult skin epithelia
BCK_SKN;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 220805 171648 10.6589 59488382	Other Tissues	ATAC	GEO	0.5868	0.237	0.0225	Details	Mouse back skin
wES.CRNL_NRL_CRST;E10.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 160367 105737 5.057 119917205 rep2 160367 105737 6.6013 100793788	ES cells and embryonic tissues	ATAC	GEO	0.6777	0.178	0.0102	Details	Cranial neural crest cells (E10.5,WT)
NPC;F129;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 217385 164371 6.7583 162522039	Neural Cells and Tissues	ATAC	GEO	0.587	0.293	0.0126	Details	neural progenitor cells(F129)
NPC;G4;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 223443 165734 6.8427 148569741	Neural Cells and Tissues	ATAC	GEO	0.6077	0.237	0.0135	Details	neural progenitor cells(G4)
NPC;Ch13;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 190318 124973 10.3547 86662422	Neural Cells and Tissues	ATAC	GEO	0.6109	0.305	0.0138	Details	neural progenitor cells(Ch13)
NPC;mE6;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 223009 168664 7.3483 155399279	Neural Cells and Tissues	ATAC	GEO	0.6227	0.244	0.0141	Details	neural progenitor cells(mE6)
ePyramidal_NRN;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 271577 201826 9.2944 102616700 rep2 271577 201826 9.3941 89229958	Neural Cells and Tissues	ATAC	GEO	0.5855	0.28	0.0306	Details	excitatory pyramidal neurons
iPV_NRN;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 244415 175463 8.2016 107232529 rep2 244415 175463 9.4307 89739894	Neural Cells and Tissues	ATAC	GEO	0.5743	0.255	0.0219	Details	parvalbumin-positive (PV) inhibitory neurons
iVIP_NRN;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 242514 180616 12.774 64095408 rep2 242514 180616 13.9045 55760003	Neural Cells and Tissues	ATAC	GEO	0.6056	0.257	0.0276	Details	vasoactive intestinal peptide-positive (VIP) inhibitory neurons
eCortical_NRN;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 239347 167166 9.3682 80121615 rep2 239347 167166 9.6295 66162006	Neural Cells and Tissues	ATAC	GEO	0.5907	0.278	0.0218	Details	Cortical excitatory neurons
G_NRN_P;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 191472 129314 16.7166 31762263 rep2 191472 129314 17.0127 24782099 rep3 191472 129314 10.9465 40353758	Neural Cells and Tissues	ATAC	GEO	0.6524	0.203	0.0189	Details	Granule Neuron Progenitors (wt)
wES;GRM;E16.5;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 209073 119719 7.2165 90508387	ES cells and embryonic tissues	ATAC	GEO	0.4588	0.343	0.0099	Details	E16.5 sorted germ cells(wt)
ThMS_MEC;Aire++;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 133477 79332 13.4316 25913424 rep2 133477 79332 11.0568 21298623	Other Tissues	ATAC	GEO	0.6071	0.224	0.0104	Details	Thymus MECs (Aire+/+)
Corticotrope;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 170220 120465 7.6921 75702425 rep2 170220 120465 7.9933 54672219	Neural Cells and Tissues	ATAC	GEO	0.6212	0.187	0.013	Details	FACS-purified corticotrope cells
Melanotrope;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 258113 203957 7.7178 80478162 rep2 258113 203957 6.4851 100166213	Neural Cells and Tissues	ATAC	GEO	0.5756	0.231	0.0207	Details	FACS-purified melanotrope cells
ES;ZhBTc4;untreated;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 241074 173485 9.431 75607493 rep2 241074 173485 9.7991 53588215 rep3 241074 173485 9.4419 59698817	ES cells and embryonic tissues	ATAC	GEO	0.6982	0.165	0.022	Details	ZHBTC4 ES untreated
npES;ZHBTC4;doxyc;treat;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 226302 155704 9.9248 65499092 rep2 226302 155704 10.0232 58855310 rep3 226302 155704 8.9891 76933207	ES cells and embryonic tissues	ATAC	GEO	0.7087	0.173	0.0187	Details	ZHBTC4 ES doxycycline-treated
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 190112 131468 10.1606 32113752 rep2 190112 131468 10.8316 29975300 rep3 190112 131468 11.82 22201092	ES cells and embryonic tissues	ATAC	GEO	0.6967	0.15	0.0168	Details	ZHBTC4 ES Brg1fl/fl untreated
ES;JM8.N4;Asynch;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 137776 97818 4.6453 176383965 rep2 137776 97818 3.533 197121315	ES cells and embryonic tissues	ATAC	GEO	0.7026	0.199	0.0048	Details	JM8.N4 Asynchronous
ES;JM8.N4;Mitosis;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 121173 75150 3.9409 145556657 rep2 121173 75150 3.54 186466550	ES cells and embryonic tissues	ATAC	GEO	0.6752	0.219	0.0037	Details	JM8.N4 Mitosis
Mammary_BptfKO;A;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 125103 83090 18.7841 24903536 rep2 125103 83090 15.5136 4933855 rep3 125103 83090 18.0835 25172499 rep4 125103 83090 22.0198 8056501 rep5 125103 83090 21.2393 6631293	Other Tissues	ATAC	GEO	0.6299	0.221	0.0133	Details	BptfKO Mammary Cells
pMeg;A;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 134033 96187 17.9057 30178694 rep2 134033 96187 17.7766 29885640	Other Immune Cells	ATAC	ENCODE	0.6153	0.238	0.0135	Details	Megakaryocyte primary cell
EPP;A;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 64522 47276 12.4527 25644174 rep2 64522 47276 11.3989 28925972	Other Immune Cells	ATAC	ENCODE	0.5581	0.193	0.006	Details	Erythroid progenitor primary cell
MegEP;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 120903 79742 8.4493 36753781 rep2 120903 79742 9.0502 35701056	Other Immune Cells	ATAC	ENCODE	0.5575	0.243	0.0114	Details	Megakaryocyte-erythroid progenitor cell
pErythroblast;A;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 69214 51798 10.2287 30401327 rep2 69214 51798 10.7078 26706298	Other Immune Cells	ATAC	ENCODE	0.558	0.192	0.0066	Details	Erythroblast primary cell
MegP;A;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 177259 121195 15.0418 28693633 rep2 177259 121195 15.6634 28765318	Other Immune Cells	ATAC	ENCODE	0.6125	0.225	0.0174	Details	Megakaryocyte progenitor cell
pCMP;A;CL replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 149530 99201 13.2877 25987572 rep2 149530 99201 14.3173 21414655	Other Immune Cells	ATAC	ENCODE	0.6136	0.231	0.0147	Details	Common myeloid progenitor primary cell
DC_LPS;4h;A;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 142641 96690 17.1295 29455074 rep2 142641 96690 6.515 78975437	Other Immune Cells	ATAC	ENCODE	0.6434	0.182	0.015	Details	dendritic cell(100 ng/mL Lipopolysaccharide, 4hours)
pGMP;A;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 159589 110507 15.3855 27182580 rep2 159589 110507 10.7975 43071479	Other Immune Cells	ATAC	ENCODE	0.6378	0.222	0.0165	Details	Granulocyte monocyte progenitor primary cell
DC;A;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 142641 96656 17.1295 29455074 rep2 142641 96656 6.515 78975437	Cancer or Immortalized cells	ATAC	ENCODE	0.6469	0.193	0.015	Details	dendritic in vitro differentiated cells
ES;ZhBTc4;1;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 221881 162276 9.5562 111711203	ES cells and embryonic tissues	DHS	GEO	0.6826	0.168	0.0165	Details	Undifferentiated mouse embryonic stem cells (ZhBTc4)
ES;ZhBTc4;2;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 226999 162730 11.1828 97964123	ES cells and embryonic tissues	DHS	GEO	0.6699	0.186	0.0176	Details	Undifferentiated mouse embryonic stem cells (ZhBTc4)
ES;D0;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 186232 123926 8.1646 115819715	ES cells and embryonic tissues	DHS	GEO	0.6019	0.285	0.0104	Details	Embryonic day 0 (stem cell, ES-CJ7)
NIH3T3_FBROBLST;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 178711 131097 9.0924 137641571	Cancer or Immortalized cells	DHS	GEO	0.5795	0.237	0.015	Details	fibroblast/NIH-3T3
LVR;8wks;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 183134 138845 7.2165 108721829	Other Tissues	DHS	GEO	0.5037	0.279	0.0187	Details	Liver (Adult 8 weeks)
LNG;8wks;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 254593 185872 6.1591 230509593	Other Tissues	DHS	GEO	0.5162	0.263	0.0114	Details	Lung (adult-8wks)
3134_mammaryADNCRCNM;D;GE replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 138326 87140 13.3505 72462209	Cancer or Immortalized cells	DHS	GEO	0.6141	0.212	0.0137	Details	murine mammary adenocarcinoma cell line(3134 cell line)
T_SPLND_blstCLTRD;CD4+;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 85432 60565 9.6747 96140888 rep2 85432 60565 12.1666 15612585	T cells	DHS	GEO	0.6067	0.222	0.0084	Details	Blast-cultured splenic CD4+ T-cells
naiveT_SPLND;CD4+;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 43667 28604 10.4676 8387784 rep2 43667 28604 8.3375 40446645	T cells	DHS	GEO	0.6113	0.212	0.0043	Details	Naive splenic CD4+ T-cells
Treg;CD4+_CD25+;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 145283 118864 6.5944 199737148	T cells	DHS	GEO	0.641	0.189	0.0111	Details	Regulatory T cells CD4+,CD25+
apCD4Eff;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 97952 76175 10.576 89807626	T cells	DHS	GEO	0.6148	0.211	0.0114	Details	Activated primary CD4 effector cells, isolated ex vivo
apTreg;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 138182 116215 5.9779 143353004	T cells	DHS	GEO	0.6033	0.212	0.0128	Details	Activated primary T regulatory cells, isolated ex vivo
immatureB_SPLND;CD43-_CD11b-;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 125656 99407 7.0454 180941018	B cells	DHS	GEO	0.6158	0.217	0.0105	Details	mouse spleen B cells, CD43-,CD11b- (immature B cells)
416B_MP;CD34+;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 193815 152251 7.4698 130295313	Cancer or Immortalized cells	DHS	GEO	0.5499	0.248	0.0165	Details	myeloid progenitor cells, CD34+ (416B)
WHL_BRN;8wks;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 260635 173699 10.6646 118439720	Neural Cells and Tissues	DHS	GEO	0.5919	0.247	0.0204	Details	Whole Brain (adult-8wks)
wES;WHL_BRN;E14.5;D;GEO replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 260135 184393 8.4578 208215043	ES cells and embryonic tissues	DHS	GEO	0.603	0.245	0.0166	Details	Whole Brain (E14.5)
ES;129S1_SVImJ_CJ7;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 200570 133550 8.1633 115715038 rep2 200570 133550 14.9991 31798472	ES cells and embryonic tissues	DHS	ENCODE	0.6503	0.256	0.0138	Details	Mus musculus strain 129S1/SVImJ ES-CJ7 stem cell male embryo
ES;E14;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 194220 128137 14.2709 31820369 rep2 194220 128137 9.269 22925543	ES cells and embryonic tissues	DHS	ENCODE	0.6432	0.178	0.0173	Details	mouse embryonic stem cells E14
ES;C57BL_6J;R1;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 264205 203234 7.0633 166825551	ES cells and embryonic tissues	DHS	ENCODE	0.5748	0.258	0.0145	Details	Mus musculus strain C57BL/6J R1 stem cell
NIH3T3_FBROBLST;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 181864 127493 9.0817 137526751 rep2 181864 127493 16.2121 20385797	Cancer or Immortalized cells	DHS	ENCODE	0.5662	0.236	0.0158	Details	Fibroblast/NIH3T3
FBRBLST;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 167148 109230 14.9712 23906962 rep2 167148 109230 11.9516 20450877	Other Tissues	DHS	ENCODE	0.5443	0.258	0.0192	Details	Fibroblast (adult-8wks)
3T3-L1;FBRBLST;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 222811 179668 4.7801 249521428	Cancer or Immortalized cells	DHS	ENCODE	0.4785	0.293	0.0118	Details	mouse embryo fibroblasts/3T3-L1
KDNY;P0;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 266660 187208 7.6326 168465251 rep2 331666 227156 7.3972 178440198	Other Tissues	DHS	ENCODE	0.628	0.242	0.0811	Details	kidney (P0)
KDNY;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 200603 140321 8.9682 104649434 rep2 200603 140321 15.4059 23694000	Other Tissues	DHS	ENCODE	0.5502	0.248	0.0165	Details	Kidney(adult-8wks)
LVR;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 189092 141583 10.5019 17456519 rep10 189092 141583 9.0657 32667634 rep11 189092 141583 18.336 15179717 rep12 189092 141583 16.7853 22681444 rep13 189092 141583 10.1592 29558474 rep14 189092 141583 12.0208 27381052 rep2 189092 141583 7.0062 113906602 rep3 189092 141583 11.7577 19823261 rep4 189092 141583 11.3708 17752601 rep5 189092 141583 15.65 16038825 rep6 189092 141583 13.2908 16127786 rep7 189092 141583 11.1194 17614444 rep8 189092 141583 17.6579 19263658 rep9 189092 141583 15.7119 21092484	Other Tissues	DHS	ENCODE	0.5399	0.252	0.0223	Details	Liver(adult-8wks)
wES;LVR;E11.5;D.;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 86429 50597 15.8503 32048018 rep2 86429 50597 15.4017 30545341	ES cells and embryonic tissues	DHS	ENCODE	0.5917	0.183	0.0077	Details	Liver(E14.5)
LVR;P0;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 135095 84259 6.4269 132422169	Other Tissues	DHS	ENCODE	0.5073	0.262	0.0052	Details	liver(P0)
LNG;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 260857 184646 6.1606 230472976 rep2 260857 184646 12.1179 22295185 rep3 260857 184646 12.532 22241916	Other Tissues	DHS	ENCODE	0.5492	0.253	0.0182	Details	Lung(adult-8wks)
LNG;P0;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 246689 169517 8.101 143292993 rep2 246689 169517 9.1026 96062636	Other Tissues	DHS	ENCODE	0.5922	0.23	0.0191	Details	lung(P0)
wES;LNG;E14.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 251504 176183 8.7247 174947722	ES cells and embryonic tissues	DHS	ENCODE	0.611	0.231	0.0148	Details	Mouse lung (E14.5)
Heart;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 216638 164862 6.7714 231063522	Other Tissues	DHS	ENCODE	0.5425	0.27	0.0106	Details	Heart (adult-8wks)
Heart;P0;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 189953 124408 9.8902 76158991 rep2 189953 124408 11.4541 54048044	Other Tissues	DHS	ENCODE	0.6099	0.229	0.0175	Details	heart tissue(P0)
Adipocyte_3T3-L1D;C57BL6;D8;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 185616 138619 8.4736 60982669 rep2 185616 138619 4.4494 253967456	Cancer or Immortalized cells	DHS	ENCODE	0.5294	0.244	0.0166	Details	Mus musculus C57BL/6 adipocyte was differentiated from 3T3-L1 (Day 8)
Adipose;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 120040 74713 8.4684 18395832 rep2 120040 74713 6.4891 21405869	Other Tissues	DHS	ENCODE	0.4905	0.274	0.011	Details	Adipose tissue
RTN;D1;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 196920 138331 9.6586 153553824	Neural Cells and Tissues	DHS	ENCODE	0.653	0.192	0.0159	Details	Retina(newborn 1 day)
wES;RTN;E11.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 211534 145771 11.9454 79534550 rep2 211534 145771 7.7652 167475968	ES cells and embryonic tissues	DHS	ENCODE	0.6772	0.154	0.0193	Details	mixed embryonic mouse retina(E14.5)
CRBLM;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 118743 79431 14.6458 18866499 rep2 118743 79431 13.2157 18243263 rep3 118743 79431 17.5272 28254615	Neural Cells and Tissues	DHS	ENCODE	0.4973	0.265	0.0128	Details	Cerebellum
apThEff;CD4+;8wks;D;En. replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 104595 82411 10.5663 89786849 rep2 104595 82411 12.4838 19636196	T cells	DHS	ENCODE	0.6235	0.184	0.0129	Details	CD4-positive helper(adult-8wks, Activated primary CD4 effector cells)
abTreg;CD4+_CD25+;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 142581 113359 6.5996 199723075 rep2 142581 113359 14.4075 25206363 rep3 142581 113359 13.895 24234451	T cells	DHS	ENCODE	0.631	0.195	0.013	Details	CD4-positive, CD25-positive, alpha-beta regulatory T cell(adult-8wks)
apTreg;8wk;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 143218 118386 5.9786 143352065 rep2 143218 118386 13.1811 25567255	T cells	DHS	ENCODE	0.6326	0.191	0.0149	Details	Activated primary T regulatory cells(adult-8wks)
EP;c-kit+CD71+Ter119+;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 85736 64278 10.4188 46147613	Other Immune Cells	DHS	ENCODE	0.5936	0.189	0.01	Details	c-Kit-positive CD71-positive TER-119-positive erythroid progenitor cells
416B_MP;CD34+;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 195576 149958 7.4739 130255579 rep2 195576 149958 12.1603 18403591	Cancer or Immortalized cells	DHS	ENCODE	0.5393	0.244	0.017	Details	myeloid progenitor cells, CD34+ (416B)
immatureB_SPLND;CD43-_CD11b-;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 128596 95629 7.0455 180923266 rep2 128596 95629 17.3411 22166102 rep3 128596 95629 13.7848 26076648 rep4 128596 95629 18.6816 24991902	B cells	DHS	ENCODE	0.6259	0.198	0.0134	Details	mouse spleen B cells, CD43-,CD11b- (immature B cells)
wES;MSDRM;E11.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 223065 135205 12.641 79596446 rep2 223065 135205 21.8567 38391254	ES cells and embryonic tissues	DHS	ENCODE	0.6581	0.193	0.0183	Details	Mesoderm(E11.5)
Muller;P12;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 277130 206968 9.2293 157227576 rep2 277130 206968 12.0745 109702032 rep3 277130 206968 8.4813 172661149	Neural Cells and Tissues	DHS	ENCODE	0.6502	0.214	0.0312	Details	Muller cell(P12)
wES.Fr_BRN;E14.4;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 246559 175353 9.1438 160155200 rep2 246559 175353 12.3608 66293262	ES cells and embryonic tissues	DHS	ENCODE	0.7114	0.16	0.0233	Details	mixed embryonic mouse forebrain(E14.5)
Fr_BRN;P0;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 240964 162299 11.0576 117710072	Neural Cells and Tissues	DHS	ENCODE	0.6542	0.185	0.0176	Details	forebrain(P0)
Hnd_BRN;P0;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 249697 164021 10.1766 142326235 rep2 249697 164021 9.8996 123297728	Neural Cells and Tissues	DHS	ENCODE	0.684	0.193	0.0175	Details	mixed mouse hindbrain(P0)
wES;Hnd_BRN;E11.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 214631 149157 9.6683 92218248 rep2 214631 149157 7.1494 170200478	ES cells and embryonic tissues	DHS	ENCODE	0.723	0.15	0.0164	Details	mixed embryonic mouse hindbrain(E11.5)
wES;Hnd_BRN;E14.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 250952 159196 10.1446 157156518 rep2 250952 159196 11.913 79971735	ES cells and embryonic tissues	DHS	ENCODE	0.6749	0.2	0.017	Details	hindbrain embryo(E14.5)
wES;Md_BRN;E14.4;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 251730 166879 22.5579 36844786 rep2 251730 166879 8.6518 196990664	ES cells and embryonic tissues	DHS	ENCODE	0.6912	0.178	0.018	Details	mixed embryonic mouse midbrain(E14.5)
wES;Md_BRN;E11.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 160380 115252 13.0985 76978972 rep2 160380 115252 8.2951 64561157	ES cells and embryonic tissues	DHS	ENCODE	0.728	0.158	0.0175	Details	midbrain embryo(E11.5)
Md_BRN;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 230478 141069 10.1658 128539086 rep2 230478 141069 9.0222 79199726	Neural Cells and Tissues	DHS	ENCODE	0.6323	0.208	0.0155	Details	midbrain(P0)
wES;WHL_BRN;E14.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 319574 219919 8.4636 208202441 rep2 262168 182314 22.934 20295499	ES cells and embryonic tissues	DHS	ENCODE	0.6387	0.225	0.0209	Details	Whole Brain(E14.5)
WHL_BRN;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 272842 182883 10.6566 118051699 rep2 272842 182883 22.8079 26875229 rep3 272842 182883 21.5956 27399821 rep4 272842 182883 21.6081 23413184 rep5 272842 182883 12.4127 45570776 rep6 272842 182883 15.9948 21143031	Neural Cells and Tissues	DHS	ENCODE	0.6124	0.229	0.0283	Details	Whole Brain(adult-8wks)
wES;Telenchephalon;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 242651 148955 13.0311 38057733 rep2 242651 148955 13.5146 23226492 rep3 242651 148955 14.223 24480536	ES cells and embryonic tissues	DHS	ENCODE	0.6109	0.237	0.0237	Details	telencephalon tissue
wES;limb;E14.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 239587 150985 8.7845 142677506 rep2 239587 150985 10.3288 89941398	ES cells and embryonic tissues	DHS	ENCODE	0.6502	0.208	0.0161	Details	mixed embryonic mouse limb(E14.5)
wES;limb;E11.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 226433 156045 6.7951 174399423 rep2 226433 156045 9.5655 113243454	ES cells and embryonic tissues	DHS	ENCODE	0.6701	0.196	0.0166	Details	mixed embryonic mouse limb(E11.5)
wES;Fr_lmb;E11.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 166971 102591 27.0551 23510029 rep2 166971 102591 10.2246 85774533	ES cells and embryonic tissues	DHS	ENCODE	0.6487	0.187	0.0136	Details	embryo forelimb buds(E11.5)
wES;Hnd_lmb;E11.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 136937 83203 20.1379 27056801 rep2 136937 83203 8.3614 33852768	ES cells and embryonic tissues	DHS	ENCODE	0.6004	0.232	0.0134	Details	embryo hindlimb buds (E11.5)
wES;FaceP;E14.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 368276 228990 9.0167 159460017 rep2 260944 166121 13.0191 85916743	ES cells and embryonic tissues	DHS	ENCODE	0.6297	0.226	0.0213	Details	embryonic facial prominence(e14.5)
wES;FaceP;E11.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 204877 133114 11.199 106771438	ES cells and embryonic tissues	DHS	ENCODE	0.6746	0.184	0.0137	Details	embryonic facial prominence(e11.5)
wES;NRL_Tube;E11.5;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 213342 149357 8.4544 151474685 rep2 213342 149357 13.6779 72527953	ES cells and embryonic tissues	DHS	ENCODE	0.7236	0.138	0.0191	Details	neural tube embryo(E11.5)
LRG_INTSTN;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 128555 89436 13.7414 28452865 rep2 128555 89436 8.1363 34306706	Other Tissues	DHS	ENCODE	0.5549	0.233	0.0143	Details	Large Intestine (adult-8wks)
STMCH;P0;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 174433 121637 6.4419 120853885 rep2 181904 121637 5.6203 163088440	Other Tissues	DHS	ENCODE	0.5673	0.242	0.0103	Details	stomach(P0)
SKLTL_Muscle;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 146772 90992 9.6676 78235884 rep2 146772 90992 13.8174 24083036	Other Tissues	DHS	ENCODE	0.5371	0.269	0.0122	Details	skeletal muscle tissue(adult-8wks)
Spleen;8wks;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 76835 51010 22.7051 20603317 rep2 76835 51010 18.1624 25015661	Other Tissues	DHS	ENCODE	0.5814	0.22	0.0081	Details	spleen(adult-8wks)
3134_mammaryADNCRCNM;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 136947 87930 39.7157 7022509 rep10 136947 87930 51.924 3344251 rep11 136947 87930 52.7641 1683810 rep12 136947 87930 48.1718 4780497 rep13 136947 87930 46.5175 2835281 rep14 136947 87930 44.3893 4971237 rep15 136947 87930 35.2295 7797335 rep16 136947 87930 46.6652 5100968 rep17 136947 87930 24.9076 19159043 rep18 136947 87930 47.8135 2858030 rep19 136947 87930 47.9708 4971910 rep2 136947 87930 48.6307 2648207 rep20 136947 87930 34.7946 7722377 rep21 136947 87930 45.3599 3001479 rep22 136947 87930 31.076 4540686 rep23 136947 87930 38.5522 7107385 rep24 136947 87930 42.1188 5839738 rep25 136947 87930 47.5765 2932897 rep26 136947 87930 48.4718 5071643 rep27 136947 87930 37.4407 7228337 rep28 136947 87930 13.5389 7941050 rep29 136947 87930 20.7642 1178337 rep3 136947 87930 45.1851 4855881 rep4 136947 87930 35.8257 7443213 rep5 136947 87930 34.7476 7583068 rep6 136947 87930 46.623 2927897 rep7 136947 87930 30.5213 4506228 rep8 136947 87930 39.9602 6496648 rep9 136947 87930 39.9044 6923108	Cancer or Immortalized cells	DHS	ENCODE	0.5918	0.226	0.0139	Details	murine mammary adenocarcinoma cell line(3134 cell line)
416B;HMTP_SPNSN;CD34+;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 183578 137354 24.9689 8400149 rep10 183578 137354 25.2388 8138041 rep11 183578 137354 35.2291 1720564 rep12 183578 137354 23.8313 9462970 rep13 183578 137354 24.0435 9527413 rep14 183578 137354 24.4182 8724448 rep15 183578 137354 13.0959 18349060 rep16 183578 137354 23.4351 9617295 rep17 183578 137354 24.3546 8831979 rep18 183578 137354 23.597 9489217 rep19 183578 137354 41.8249 202340 rep2 183578 137354 24.0162 9496571 rep20 183578 137354 35.9471 874183 rep21 183578 137354 23.8459 9518934 rep22 183578 137354 12.4927 30203673 rep23 183578 137354 23.6 9619118 rep24 183578 137354 24.0781 9527917 rep25 183578 137354 24.0919 9278976 rep26 183578 137354 12.1603 18403591 rep3 183578 137354 25.6257 7142226 rep4 183578 137354 24.0929 9313921 rep5 183578 137354 23.7298 9589635 rep6 183578 137354 24.0699 9503380 rep7 183578 137354 17.76 14292497 rep8 183578 137354 24.1207 9527997 rep9 183578 137354 23.9965 9586763	Cancer or Immortalized cells	DHS	ENCODE	0.5793	0.23	0.0209	Details	Mouse hematopoietic suspension cell line positive for CD34(416B cell line)
A20;B-lymphoma;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 177830 149198 18.0012 10987474 rep10 177830 149198 18.2361 10932212 rep11 177830 149198 18.1804 10974464 rep12 177830 149198 17.831 10898142 rep13 177830 149198 17.6211 10922703 rep14 177830 149198 18.1906 10808248 rep15 177830 149198 15.5067 3300423 rep16 177830 149198 8.1824 26514251 rep2 177830 149198 17.9871 10987502 rep3 177830 149198 17.8915 10943898 rep4 177830 149198 16.0158 4891333 rep5 177830 149198 18.4378 10475072 rep6 177830 149198 18.3476 10402272 rep7 177830 149198 18.9656 9574445 rep8 177830 149198 12.0798 20809534 rep9 177830 149198 20.9909 4469992	Cancer or Immortalized cells	DHS	ENCODE	0.5745	0.2	0.0203	Details	Murine B-lymphoma cell line(A20 cell line)
AML;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 198208 149522 5.8136 241539321 rep2 198208 149522 18.3448 27812360 rep3 198208 149522 12.7962 21655008	Cancer or Immortalized cells	DHS	ENCODE	0.6384	0.208	0.0162	Details	acute myeloid leukemia
CH12.LX;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 151504 104647 22.8864 10289722 rep10 151504 104647 20.9964 6257002 rep11 151504 104647 20.011 5387841 rep2 151504 104647 23.172 9793304 rep3 151504 104647 22.4985 10375219 rep4 151504 104647 27.2006 3662929 rep5 151504 104647 23.7453 9602811 rep6 151504 104647 23.0811 10001248 rep7 151504 104647 24.3368 8603706 rep8 151504 104647 22.5235 10188014 rep9 151504 104647 19.76 8760291	Cancer or Immortalized cells	DHS	ENCODE	0.5747	0.232	0.0159	Details	CH12.LX cell line
MEF.GATA-1-ER;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 118042 85788 12.7996 13596350 rep2 118042 85788 21.1754 2836542 rep3 118042 85788 15.6108 14644325 rep4 118042 85788 10.3328 12508650 rep5 118042 85788 18.308 3795062	Cancer or Immortalized cells	DHS	ENCODE	0.5226	0.224	0.0143	Details	MEL-GATA-1-ER cell line
MEL;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 218606 183914 11.7751 21913627 rep2 218606 183914 4.3659 227076119	Cancer or Immortalized cells	DHS	ENCODE	0.5272	0.263	0.0178	Details	MEL cell line
MEL_Znc_di-cl;24h;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 232192 183630 7.0139 133546065 rep2 232192 183630 14.2448 21127964	Cancer or Immortalized cells	DHS	ENCODE	0.5677	0.24	0.0207	Details	MEL cell line treated with 125 uM zinc dichloride for 24 hours
NIH3T3;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 173083 115773 30.7691 8955599 rep10 173083 115773 13.9453 2352061 rep11 173083 115773 31.4668 9560902 rep12 173083 115773 31.2051 9522679 rep13 173083 115773 30.9627 9124653 rep14 173083 115773 30.8126 9749232 rep15 173083 115773 31.4187 9547927 rep16 173083 115773 30.599 9229782 rep17 173083 115773 31.094 9558001 rep18 173083 115773 31.1128 8588610 rep19 173083 115773 39.7467 333608 rep2 173083 115773 31.1411 9219781 rep20 173083 115773 30.2899 8847307 rep21 173083 115773 31.0712 9426047 rep22 173083 115773 31.1637 9441928 rep23 173083 115773 30.8915 9744515 rep24 173083 115773 20.2332 3596764 rep25 173083 115773 16.2121 20385797 rep3 173083 115773 30.8067 9558704 rep4 173083 115773 31.0242 9349720 rep5 173083 115773 30.4008 9452616 rep6 173083 115773 31.0729 9509873 rep7 173083 115773 30.7313 8967548 rep8 173083 115773 30.8715 9247479 rep9 173083 115773 30.6215 8719936	Cancer or Immortalized cells	DHS	ENCODE	0.6002	0.219	0.0184	Details	NIH3T3
MTR_NRN_MN1;methyl3;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 196358 142074 16.7638 44005294 rep2 196358 142074 10.5977 103274339 rep3 196358 142074 33.5681 5732383 rep4 196358 142074 13.7866 45476793 rep5 196358 142074 8.5762 117117327 rep6 196358 142074 23.9495 8103581	Cancer or Immortalized cells	DHS	ENCODE	0.5612	0.229	0.0192	Details	cholinergic motor neuron cell line MN1 treated with 10 nM methyltrienolone
MN1;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 182850 134190 8.0448 132797234 rep2 182850 134190 20.8515 9177043 rep3 182850 134190 12.7254 50639908 rep4 182850 134190 16.1059 49368768 rep5 182850 134190 36.3251 2981833 rep6 182850 134190 36.6876 2113734 rep7 182850 134190 21.235 25274277 rep8 182850 134190 25.4546 12721521	Cancer or Immortalized cells	DHS	ENCODE	0.5667	0.208	0.0189	Details	MN1 cell line
3T3-L1;D;En replicate Naïve overlap peaks IDR peaks TSS enrichment (< 8 is very poor <10 is low) Final number of unique mapping, dup-filtered, chrM filtered reads rep1 218252 172233 12.4829 27634745 rep2 218252 172233 4.9727 231392363	Cancer or Immortalized cells	DHS	ENCODE	0.575	0.204	0.0189	Details	3T3-L1

from matlas.reports import display_global_motifDB
display_global_motifDB(homer_root, modisco_root)

Reports for all CISBP_2.00 motifs. Each report contains the list of celltypes found by TF-MoDISco or Homer.

Click the following links to checkout the TF reports

AP-2

Tfap2c

Tfap2b

Tfap2e

Tfap2a

ARID/BRIGHT

Arid3a

Arid3b

AT hook

Phf21a

Hmga2

C2H2 ZF

Klf8

Wt1

Sp7

Klf9

Zbtb7a

Prdm1

Sp1

Bcl6

Zic2

Zfp202

Snai1

Zic5

Zic1

Klf12

Ikzf1

Gli3

Ctcfl

Egr3

Hinfp

Sp2

Mecom

Gfi1b

Zfp740

Zfp300

Klf1

Klf5

Insm1

Klf15

Rest

Snai2

Prdm9

Sp3

Klf3

Zfp637

Klf6

Zkscan5

Ctcf

Zbtb33

Sp5

Zfp322a

Zbtb17

Klf4

Zfp105

Hic1

Zfp335

Zfp57

Zic3

Zfp281

Egr2

Gli2

Zscan10

Mzf1

Gli1

Plagl1

Zfp42

Zscan26

Zbtb14

Mtf1

Maz

Egr1

Sp4

Dnajc21

Prdm16

Sall4

Yy1

Zbtb1

Zkscan1

Zfp143

Zfx

Klf7

C2H2 ZF,Homeodomain

Zeb1

CBF/NF-Y

Nfya

CSL

Rbpj

Rbpjl

CUT,Homeodomain

Onecut1

Cux2

CxxC

XP_006525770.1

E2F

E2f5

E2f7

E2f6

E2f4

E2f3

E2f1

E2f2

EBF1

Ebf1

Ets

Elk3

Spdef

Elf3

Etv4

Elf1

Etv6

Elf5

Ets2

Elf4

Elk1

Fli1

Etv5

Spib

Etv2

Elk4

Gabpa

Spi1

Elf2

XP_911724.4

Etv1

Etv3

Ehf

Ets1

Spic

Fev

Erg

Forkhead

Foxc2

Foxk1

Foxj2

Foxp2

Foxo1

Foxd3

Foxo6

Foxi1

Foxc1

Foxj3

Foxa1

Foxp1

Foxl2

Foxg1

Foxm1

Foxn4

Foxo4

Foxd1

Foxj1

Foxo3

Foxl1

Foxb1

Foxa3

Gm5294

Foxa2

Foxq1

GATA

Gata2

Gata3

Gata1

Gata5

Gata4

Gata6

Grainyhead

Grhl2

Tcfcp2l1

HSF

Hsf1

Homeodomain

Hoxa3

Hoxb4

Nkx1-1

Nkx6-3

Pbx1

Gsc

En2

Emx2

Isl1

Nkx2-9

Lmx1b

Hnf1a

Alx3

Hmx1

Meis2

Dlx4

Hnf1b

Hoxa10

Cphx1

Lhx8

Gbx1

Hoxc8

Cdx1

Prop1

Prrx2

Hoxa2

Hoxc11

Six1

Hoxb5

Hoxc9

Lhx1

Dlx3

Hoxb7

Nkx2-4

Hlx

Pitx1

Hmbox1

Duxbl1

Lhx4

En1

Obox1

Isl2

Hoxd9

Six6

Meis3

Pitx3

Dlx1

Evx2

Pitx2

Irx3

Nkx3-1

Six2

Obox5

Hoxd13

Hoxa1

Phox2a

Hoxb13

Obox3

Lhx9

Six4

Dbx1

Bsx

Msx1

Cdx4

Barhl1

Hoxc6

Tgif2

Alx4

Hoxb3

Pbx3

Dlx5

Dmbx1

Hoxd3

Hoxc13

Hoxd1

Pbx2

Gsx2

Sebox

Vsx2

Prrx1

Hmx2

Nkx2-2

Hoxb6

Vsx1

Noto

Msx2

Cdx2

Isx

Lmx1a

Nobox

Otx2

Hoxc10

Lhx2

Nkx1-2

Meox1

Barx1

Dlx2

Mnx1

Hoxd8

Otp

Hoxa7

Hoxa9

Nkx2-5

Rhox6

Phox2b

Obox6

Vax1

Hoxb8

Hoxd11

Uncx

Lhx3

Msx3

Meis1

A1JVI6_MOUSE

Pknox1

Nkx2-6

Rax

Otx1

Hoxa4

Crx

Dbx2

Hoxd10

Pdx1

Nkx3-2

Tlx2

Hoxc12

Nkx2-3

Tgif1

Barx2

Hoxc4

Gbx2

Alx1

Lhx6

Hoxa5

Hoxa13

Hoxb9

Arx

Q8VHG7_MOUSE

Vax2

Barhl2

Nanog

Lhx5

Hoxa6

Pknox2

Meox2

Lbx2

Evx1

Hoxa11

Nkx2-1

Shox2

Esx1

Nkx6-1

Hoxc5

Homeodomain,POU

Pou2f3

Pou3f4

Pou2f2

Pou3f2

Pou5f1

Pou2f1

Pou4f3

Pou6f1

Pou1f1

Pou3f1

Homeodomain,Paired box

Pax6

Pax2

Pax4

Pax7

IRF

Irf7

Irf2

Irf9

Irf4

Irf5

Irf8

Irf1

Irf3

Irf6

MADS box

Mef2a

Mef2d

Mef2c

Srf

MBD

Mecp2

Mbd2

Myb/SANT

Mybl1

Prdm11

Mybl2

Myb

Mypop

Nuclear receptor

Pgr

Nr1i2

Ar

Rxra

Esr1

Nr1h2

Nr1d1

Nr1h3

Nr4a1

Nr5a1

Vdr

Nr2f2

Nr2f6

Rorb

Nr2c2

Esrrb

Nr2f1

Rarg

Hnf4a

Esrra

Nr1i3

Ppara

Rorc

Rarb

Nr2e3

Nr4a2

Pparg

Rara

Rxrg

Esrrg

Nr3c1

Rora

Thra

Nr2c1

Rxrb

Hnf4g

Nr1d2

Nr2e1

Nr1h4

Esr2

Nr5a2

POU

Pou3f3

Paired box

Pax5

RFX

Rfx6

Rfx2

Rfx1

Rfx3

Rfx7

Rfx4

Rel

Nfatc1

Nfatc3

Rel

Nfkb2

Rela

Nfkb1

Nfatc2

Relb

Nfatc4

Runt

Runx1

Runx2

Runx3

SAND

Sp110

Gmeb1

Gmeb2

Sp100

SMAD

Smad4

Nfic

Nfib

Nfia

Smad3

STAT

Stat1

Stat5a

Stat6

Stat2

Stat5b

Stat4

Stat3

Sox

Sox3

Sox9

Cic

Tcf7l2

Sox7

Sry

Tcf7l1

Sox4

Sox30

Tcf7

Lef1

Sox11

Sox17

Sox18

Sox2

Sox10

Sox1

Sox14

Sox8

Sox13

Sox12

Sox15

Sox21

Sox6

Sox5

T-box

Tbx1

Tbx20

Tbx3

Eomes

Tbx4

Tbr1

Tbx21

Tbx5

Tbx2

T

TEA

Tead1

Tead2

Tead4

THAP finger

Thap11

Unknown

Nrf1

Nfyb

Cbfb

Taf1

Nfyc

Epas1

bHLH

Mnt

Mitf

Msgn1

Bhlhe22

Myc

Max

Ascl1

Ahr

Myf6

Neurog2

Srebf1

Lyl1

Tcf3

Mlx

Bhlhe40

Mlxip

Tfeb

Arnt

Bhlha15

Hes5

Mycn

Tcfl5

Hey2

Clock

Neurod1

Ptf1a

Neurod2

Tfap4

Figla

Ascl2

Mxi1

Tfec

Usf1

Olig2

Nhlh1

Myf5

Myog

Bhlhe41

Tfe3

Hes7

Hes1

Tcf4

Hand1

Usf2

Tcf12

Myod1

Arntl

Atoh1

Srebf2

Tal1

Tcf21

Twist2

Twist1

Msc

Npas2

Olig3

Nhlh2

Arnt2

Neurog1

Hes2

bZIP

Atf3

Nfe2

Xbp1

Batf

Creb3l2

Mafk

Nfe2l1

Maf

Creb5

Junb

Hlf

Fosl1

Batf3

Jun

Maff

Crem

Nfil3

Mafa

XP_002726925.1

Cebpg

Mafb

Jdp2

Mafg

Ddit3

Creb1

Atf7

Cebpd

Fosl2

Dbp

Atf1

Cebpe

Fos

Fosb

Nfe2l2

Jund

Bach2

Cebpa

Tef

Bach1

Atf4

Atf2

Cebpb

p53

Trp53

Trp73

Trp63

Following TFs are not found by Any Sample

ARID/BRIGHT

Arid5a, Arid5b

AT hook

Ahctf1, Setbp1

C2H2 ZF

Zfp263, EDL38120.1, Zscan4c, Osr2, Bcl6b, Gfi1, Zfp932, Zfp410, Zbtb3, Zfp691, Zfp711, Osr1, Ovol2, Zbtb7b, Glis2, Ovol1, Zbtb12, Prdm5, Prdm14, Zfp128, Zfp3, Zfp652

C2H2 ZF,Myb/SANT

Zscan20

CUT,Homeodomain

Cux1

DM

Dmrtc2, Dmrtb1, Dmrt1

Forkhead

Foxn1

GCM

Gcm1

HSF

Hsf2

Homeodomain

Irx4, Irx6, Irx5, Homez, XP_003689450.1, Six3, Rhox11, Irx2, Hdx

Myb/SANT

Terf2

Ndt80/PhoG

Myrf

SAND

XP_001473574.2, Aire

Sox

Hmg20b, Hbp1, Bbx

TBP

Tbp

Unknown

Spz1

bHLH

Sohlh2, Hif1a

bZIP

Crebzf

from matlas.matches import initialize_multisamples
modisco_obs = initialize_multisamples(modisco_root)

TF-MoDISco is using the TensorFlow backend.

from matlas.plots import plot_motif_summary

plot_motif_summary(modisco_obs)

from matlas.plots import plot_pattern_summary

plot_pattern_summary(modisco_obs)

from matlas.plots import plot_celltype_summary

plot_celltype_summary(modisco_obs)

from matlas.reports import display_noninteractive_matrices
display_noninteractive_matrices(modisco_root, homer_root, denovo="Homer")

Each value in the matrix represents maximum of -log10(qvalue) of the motif match found for the cell type

Motif X Cell type matrix by Homer

<Figure size 432x288 with 0 Axes>

display_noninteractive_matrices(modisco_root, homer_root, denovo="Modisco")

Each value in the matrix represents maximum of -log10(qvalue) of the motif match found for the cell type

Motif X Cell type matrix by TF-MoDISco

<Figure size 432x288 with 0 Axes>

display_noninteractive_matrices(modisco_root, homer_root, denovo="Homer", overlay=True)

Each value in the matrix represents maximum of -log10(qvalue) of the motif match found for the cell type

Motif X Cell type matrix by Homer (on Modisco)

<Figure size 432x288 with 0 Axes>

from matlas.reports import display_interactive_matrices
display_interactive_matrices(modisco_root, homer_root, denovo="Modisco")
display_interactive_matrices(modisco_root, homer_root, denovo="Homer", overlay=False)
display_interactive_matrices(modisco_root, homer_root, denovo="Homer", overlay=True)

TF-MoDISco is using the TensorFlow backend.

Interactive versions of Motif X Cell Type Matrices where you can select and zoom

Click here to checkout the Celltype X Motif plot: Modisco

Click here to checkout the Celltype X Motif plot: Homer

Click here to checkout the Celltype X Motif plot: Homer (on Modisco)