In [1]:
# Parameters
data_name = "Uncx"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:46:40,523 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Uncx: Motif: M00443_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Uncx: #24

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00283111

Pattern: motif4.motif

Significance: 0.0529923

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00208611

Pattern: motif5.motif

Significance: 0.0349095

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00186405

Pattern: motif3.motif

Significance: 0.044849400000000005

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0319054

Pattern: motif14.motif

Significance: 0.0578678

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.038419699999999994

Pattern: motif3.motif

Significance: 0.0356255

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0441381

Pattern: motif6.motif

Significance: 0.026036200000000002

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0544754

Pattern: motif9.motif

Significance: 0.0387827

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0317996

Pattern: motif13.motif

Significance: 0.024104499999999997

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0059272

Pattern: motif16.motif

Significance: 0.021843099999999997

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00257369

Pattern: motif9.motif

Significance: 0.021100999999999998

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.059852999999999996

Pattern: motif7.motif

Significance: 0.0409827

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0496346

Pattern: motif3.motif

Significance: 0.037588199999999995

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00235131

Pattern: motif13.motif

Significance: 0.0218315

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0017565999999999999

Pattern: motif2.motif

Significance: 0.0579871

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00446988

Pattern: motif6.motif

Significance: 0.0211703

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00342275

Pattern: motif2.motif

Significance: 0.024255099999999998

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00265193

Pattern: motif3.motif

Significance: 0.036596300000000005

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00349225

Pattern: motif4.motif

Significance: 0.010803299999999998

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00277091

Pattern: motif2.motif

Significance: 0.036632300000000007

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.046874

Pattern: motif10.motif

Significance: 0.029008799999999998

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0265438

/

Pattern: metacluster_0/pattern_8

Significance: 0.00208225

Pattern: motif3.motif

Significance: 0.033429900000000005

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00101197

Pattern: motif6.motif

Significance: 0.0226359

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00918597

Pattern: motif14.motif

Significance: 0.00965481

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00212061

Pattern: motif2.motif

Significance: 0.057590499999999996

Unique Cell types only TF-MoDISco finds Uncx: #17

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0502942

/

Pattern: metacluster_0/pattern_25

Significance: 0.012994899999999998

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.00837683

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.00398197

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00328194

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.038042599999999996

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00560467

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.057272699999999996

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.054088300000000006

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.036853199999999996

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.044069699999999996

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.026727299999999996

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00707871

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.056216699999999994

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.0496519

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00378015

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.00995462

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0346034

Absent
Unique Cell types only Homer finds Uncx: #4

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.031042700000000003

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.022390900000000002

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0584003

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0258511