In [1]:
# Parameters
data_name = "NPC;F129;A;GEO"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_170-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_170-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"
In [2]:
from matlas.reports import display_metadata
load data from labcluster
Using TensorFlow backend.
2019-08-30 19:19:18,692 [WARNING] git-lfs not installed
In [3]:
display_metadata(data_name, perf_file, reportfile, sheetname)
    Sample Information
    MetaData NameDescription
    Cell typeneural progenitor cells(F129)
    Cell GroupNeural Cells and Tissues
    Experiment NameATAC
    Experiment GroupGEO
    Pipeline Output
    replicateNaïve overlap peaksIDR peaksTSS enrichment (< 8 is very poor <10 is low)Final number of unique mapping, dup-filtered, chrM filtered readsNumber of reads in called peak regionsFraction of reads in called peak regionsNumber of reads in promoter regionsFraction of reads in promoter regionsNumber of reads in enhancer regionsFraction of reads in enhancer regions
    rep12173851643716.7583162522039NANANANANANA
    Modelling Metadata
    MetricValue
    auPRC0.587
    Calibrated Recall at 50% FDR0.293
    Number of Positive Examples in Test Data101347
    Number of Negative Examples in Test Data7969504
    Imbalance Ratio in Test Data0.0126
    Test Chromosomeschr2, chr3, chr19
In [4]:
from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns
In [5]:
display_denovo_patterns(data_name, modisco_root=modisco_root)
TF-MoDISco is using the TensorFlow backend.
The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco
Click here for Denovo Patterns by TF-MoDISco: #24
Pattern NameTF Name(s)Modisco
metacluster_1/pattern_0 # seqlets: 3547 SequenceContrib ScoresHyp_Contrib Scores
Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 3016 SequenceContrib ScoresHyp_Contrib Scores
Sp2, Sp3, Sp4, Sp1, Klf3, Klf6, Klf1, E2f4, Klf7, Klf4,

Zfx, Klf8, Klf12, Zbtb17, Egr1, Wt1, Klf5, E2f1, Klf15, E2f7, Maz,

Egr2, Fli1, Sp5, Zfp281, Ptf1a
metacluster_1/pattern_2 # seqlets: 1778 SequenceContrib ScoresHyp_Contrib Scores
Nfia, Nfib, Nfic
metacluster_1/pattern_3 # seqlets: 1533 SequenceContrib ScoresHyp_Contrib Scores
Gabpa, Elk4, Elk1, Ets1, Erg, Etv5, Elk3, Fev, Etv4, Etv1,

Elf1, Etv2, Etv6, Elf2, XP_911724.4, Etv3, Ehf, Spi1, Elf5, Elf4, Spdef,

Elf3, Spib, Spic
metacluster_1/pattern_4 # seqlets: 1151 SequenceContrib ScoresHyp_Contrib Scores
Sox9, Sox2, Sox10, Sox3, Sox17, Sox4, Sox6
metacluster_1/pattern_5 # seqlets: 1068 SequenceContrib ScoresHyp_Contrib Scores
Ascl1, Atoh1, Ascl2, Myog, Myf6, Bhlha15, Tcf3, Neurod2, Myod1, Tcf12,

Neurog2, Tal1, Neurod1, Tcf7l1, Tgif1, Olig2, Tcf4, Snai2, Lyl1, Myf5, Snai1
metacluster_1/pattern_6 # seqlets: 1012 SequenceContrib ScoresHyp_Contrib Scores
Nrf1
metacluster_1/pattern_7 # seqlets: 940 SequenceContrib ScoresHyp_Contrib Scores
Rfx2, Rfx1, Rfx3, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_8 # seqlets: 695 SequenceContrib ScoresHyp_Contrib Scores
Usf2, Mbd2, Mxi1, Tfap2b
metacluster_1/pattern_9 # seqlets: 686 SequenceContrib ScoresHyp_Contrib Scores
Atf2, Atf7, Creb5, Creb1, Jdp2, Atf1, Crem, Atf3, Mafb, Hlf,

Dbp, Nfil3, Fosl2, Jun, Fosl1, Cebpb, Tef, Cebpa, Atf4, Tfe3, Srebf1,

Cebpg, Tfec, Ddit3, Gmeb2, Cebpd, Usf1, Mlx
metacluster_1/pattern_10 # seqlets: 681 SequenceContrib ScoresHyp_Contrib Scores
Nfyb, Foxi1, Nfyc, Nfya, Pbx3
metacluster_1/pattern_11 # seqlets: 585 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_12 # seqlets: 561 SequenceContrib ScoresHyp_Contrib Scores
Taf1, Yy1, Zfp42
metacluster_1/pattern_13 # seqlets: 446 SequenceContrib ScoresHyp_Contrib Scores
Thap11, Zfp143, Tbx2
metacluster_1/pattern_14 # seqlets: 330 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_15 # seqlets: 273 SequenceContrib ScoresHyp_Contrib Scores
Arntl, Tfeb, Mitf, Clock, Bhlhe40, Arnt, Srebf2, Npas2, Tcfl5, Mycn,

Rxrg, Myc, Max, Creb3l2, Bhlhe41, Nr1h4, Rxrb
metacluster_1/pattern_16 # seqlets: 248 SequenceContrib ScoresHyp_Contrib Scores
Pou2f1, Pou5f1, Pou2f2, Nanog, Pou2f3, Lhx3, Evx2, Rax, Lhx2, Pou3f1,

Otp, Pou1f1, Rhox6, Phox2b, Vsx1, Nkx1-2, Phox2a, Vsx2, Lhx9, Hoxa2, Emx2,

Prrx2, Noto, Lbx2, Gbx1, Isl1, Prrx1, Hoxc5, En2, Shox2, Pou3f2, Isx,

Arx, Esx1, Uncx
metacluster_1/pattern_17 # seqlets: 191 SequenceContrib ScoresHyp_Contrib Scores
Jund, Fosb, Junb, Fos, Batf, Bach2, Nfe2l2, Nfe2, Bach1, Mafa,

Mafk, Mafg
metacluster_1/pattern_18 # seqlets: 147 SequenceContrib ScoresHyp_Contrib Scores
Zbtb33
metacluster_1/pattern_19 # seqlets: 145 SequenceContrib ScoresHyp_Contrib Scores
Mef2d, Mef2c, Mef2a
metacluster_1/pattern_20 # seqlets: 95 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_21 # seqlets: 74 SequenceContrib ScoresHyp_Contrib Scores
Tead4, Tead1, Tead2
metacluster_1/pattern_22 # seqlets: 64 SequenceContrib ScoresHyp_Contrib Scores
Six2, Six1, Six4, Six6
metacluster_1/pattern_23 # seqlets: 41 SequenceContrib ScoresHyp_Contrib Scores
Rela
Click here for Motifs by TF-MoDISco: #209
TF NamePattern(s)
Ctcf
Pattern NameModiscoSignificance
metacluster_1/pattern_01.65588e-09
metacluster_1/pattern_80.010463799999999999
metacluster_1/pattern_150.04761
Ctcfl
Pattern NameModiscoSignificance
metacluster_1/pattern_01.65588e-09
metacluster_1/pattern_80.00476935
metacluster_1/pattern_110.0110822
metacluster_1/pattern_150.020934
Sp2
Pattern NameModiscoSignificance
metacluster_1/pattern_15.9913e-08
metacluster_1/pattern_84.3748e-05
metacluster_1/pattern_111.06651e-05
metacluster_1/pattern_122.3389899999999998e-05
metacluster_1/pattern_155.78443e-06
metacluster_1/pattern_180.00012886
metacluster_1/pattern_230.040313
Sp3
Pattern NameModiscoSignificance
metacluster_1/pattern_11.73675e-07
metacluster_1/pattern_80.000493501
metacluster_1/pattern_117.989560000000001e-05
metacluster_1/pattern_120.00032123
metacluster_1/pattern_150.000153082
metacluster_1/pattern_180.00227898
Sp4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00240255
metacluster_1/pattern_120.03359790000000001
metacluster_1/pattern_150.00981758
metacluster_1/pattern_230.058727800000000004
Sp1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.000374055
metacluster_1/pattern_80.000509476
metacluster_1/pattern_117.989560000000001e-05
metacluster_1/pattern_120.00032123
metacluster_1/pattern_153.38469e-06
metacluster_1/pattern_180.00140662
metacluster_1/pattern_230.00358638
Klf3
Pattern NameModiscoSignificance
metacluster_1/pattern_14.48927e-06
metacluster_1/pattern_80.0111609
metacluster_1/pattern_110.00328554
metacluster_1/pattern_120.03359790000000001
metacluster_1/pattern_150.00123954
Klf6
Pattern NameModiscoSignificance
metacluster_1/pattern_17.9551e-05
metacluster_1/pattern_80.0580717
metacluster_1/pattern_150.0557548
Klf1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0315223
E2f4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00105481
Klf7
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00159558
Klf4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.052954499999999995
Zfx
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00242505
metacluster_1/pattern_60.0220442
metacluster_1/pattern_80.00937944
metacluster_1/pattern_110.014137700000000001
metacluster_1/pattern_120.00226813
metacluster_1/pattern_150.028723099999999998
metacluster_1/pattern_180.00657396
Klf8
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00261259
Klf12
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0583595
Zbtb17
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00343126
metacluster_1/pattern_80.022863400000000002
metacluster_1/pattern_110.024713
metacluster_1/pattern_120.00803603
metacluster_1/pattern_150.00482961
metacluster_1/pattern_180.0420737
Egr1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00618327
metacluster_1/pattern_80.0275082
metacluster_1/pattern_150.038535599999999996
Wt1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00567196
metacluster_1/pattern_80.022863400000000002
metacluster_1/pattern_110.0209631
metacluster_1/pattern_120.021183
metacluster_1/pattern_150.00968344
metacluster_1/pattern_180.034488599999999994
metacluster_1/pattern_230.010500399999999998
Klf5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00874622
E2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00953725
Klf15
Pattern NameModiscoSignificance
metacluster_1/pattern_10.010073899999999998
metacluster_1/pattern_230.014332399999999999
E2f7
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0103069
Maz
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0192137
metacluster_1/pattern_230.018549799999999998
Egr2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0194843
metacluster_1/pattern_120.03359790000000001
Fli1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0215359
metacluster_1/pattern_30.000929158
metacluster_1/pattern_80.0565404
Sp5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0314884
metacluster_1/pattern_230.018549799999999998
Zfp281
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0315223
Ptf1a
Pattern NameModiscoSignificance
metacluster_1/pattern_10.033243
metacluster_1/pattern_50.024084400000000002
Nfia
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00232045
Nfib
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00232045
Nfic
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0104822
Gabpa
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000855563
Elk4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000855563
Elk1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0007953680000000001
Ets1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000860636
Erg
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000955355
Etv5
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000281824
Elk3
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0005616519999999999
Fev
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000281824
Etv4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00135927
Etv1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000860636
Elf1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000860636
Etv2
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000929158
Etv6
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0044659999999999995
Elf2
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0139213
XP_911724.4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00116048
Etv3
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00135927
Ehf
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0168272
Spi1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0385717
Elf5
Pattern NameModiscoSignificance
metacluster_1/pattern_30.037238099999999996
Elf4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00865338
Spdef
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0168272
Elf3
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0544942
Spib
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0436906
Spic
Pattern NameModiscoSignificance
metacluster_1/pattern_30.04871369999999999
Sox9
Pattern NameModiscoSignificance
metacluster_1/pattern_46.64914e-11
Sox2
Pattern NameModiscoSignificance
metacluster_1/pattern_40.000857468
metacluster_1/pattern_160.031278700000000006
metacluster_1/pattern_200.0436557
Sox10
Pattern NameModiscoSignificance
metacluster_1/pattern_40.000857468
Sox3
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00130416
Sox17
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00103739
Sox4
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00747998
Sox6
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00467444
Ascl1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00454242
Atoh1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0116466
Ascl2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00454242
Myog
Pattern NameModiscoSignificance
metacluster_1/pattern_50.027005599999999998
Myf6
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00454242
Bhlha15
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00582295
Tcf3
Pattern NameModiscoSignificance
metacluster_1/pattern_50.042984100000000004
Neurod2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00641608
Myod1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0102762
Tcf12
Pattern NameModiscoSignificance
metacluster_1/pattern_50.046899699999999996
Neurog2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0102762
Tal1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0104842
Neurod1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.019671
Tcf7l1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.013948400000000001
Tgif1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.019671
Olig2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0406894
Tcf4
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0362909
metacluster_1/pattern_230.0558234
Snai2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0362582
Lyl1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0363287
Myf5
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0392142
Snai1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0493776
Nrf1
Pattern NameModiscoSignificance
metacluster_1/pattern_62.87258e-07
Rfx2
Pattern NameModiscoSignificance
metacluster_1/pattern_71.95931e-07
metacluster_1/pattern_142.58476e-06
Rfx1
Pattern NameModiscoSignificance
metacluster_1/pattern_71.70821e-06
metacluster_1/pattern_80.00476935
metacluster_1/pattern_110.0358116
metacluster_1/pattern_120.018831999999999998
metacluster_1/pattern_150.012224200000000001
Rfx3
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0281915
metacluster_1/pattern_140.00343446
Rfx4
Pattern NameModiscoSignificance
metacluster_1/pattern_70.000163334
metacluster_1/pattern_140.059048699999999996
Rfx7
Pattern NameModiscoSignificance
metacluster_1/pattern_70.011654799999999998
metacluster_1/pattern_140.035436199999999994
Rfx6
Pattern NameModiscoSignificance
metacluster_1/pattern_70.020696
metacluster_1/pattern_140.00110876
Usf2
Pattern NameModiscoSignificance
metacluster_1/pattern_80.010179899999999999
metacluster_1/pattern_110.00988173
metacluster_1/pattern_150.00791649
metacluster_1/pattern_180.034488599999999994
Mbd2
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0105655
Mxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_80.029586900000000003
metacluster_1/pattern_110.00308173
metacluster_1/pattern_150.00481909
Tfap2b
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0593786
Atf2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.000161907
metacluster_1/pattern_150.029395499999999998
Atf7
Pattern NameModiscoSignificance
metacluster_1/pattern_94.39542e-05
metacluster_1/pattern_150.0163207
Creb5
Pattern NameModiscoSignificance
metacluster_1/pattern_92.0972799999999997e-06
Creb1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0008602460000000001
metacluster_1/pattern_150.0377858
Jdp2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.000244088
metacluster_1/pattern_150.0552789
metacluster_1/pattern_170.000394562
Atf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.014312299999999998
metacluster_1/pattern_150.0299532
Crem
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00367041
Atf3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0102863
metacluster_1/pattern_177.5508e-07
Mafb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00450582
metacluster_1/pattern_170.0502024
Hlf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00908518
Dbp
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0328365
Nfil3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.013024
Fosl2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0106333
metacluster_1/pattern_173.1984000000000004e-05
Jun
Pattern NameModiscoSignificance
metacluster_1/pattern_90.03754
metacluster_1/pattern_172.5795100000000003e-07
Fosl1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.014312299999999998
metacluster_1/pattern_177.5508e-07
Cebpb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0414935
Tef
Pattern NameModiscoSignificance
metacluster_1/pattern_90.015257399999999999
Cebpa
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0200274
Atf4
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0546184
Tfe3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0293393
metacluster_1/pattern_150.00223364
Srebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.03754
metacluster_1/pattern_150.0076581
Cebpg
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0440773
Tfec
Pattern NameModiscoSignificance
metacluster_1/pattern_90.03754
metacluster_1/pattern_150.00223364
Ddit3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0539247
Gmeb2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.052209000000000005
Cebpd
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0546184
Usf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0546184
metacluster_1/pattern_150.035438300000000006
Mlx
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0546184
metacluster_1/pattern_150.0270988
Nfyb
Pattern NameModiscoSignificance
metacluster_1/pattern_101.25718e-09
Foxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_108.16997e-06
Nfyc
Pattern NameModiscoSignificance
metacluster_1/pattern_108.16997e-06
Nfya
Pattern NameModiscoSignificance
metacluster_1/pattern_109.43623e-06
Pbx3
Pattern NameModiscoSignificance
metacluster_1/pattern_100.000254852
Taf1
Pattern NameModiscoSignificance
metacluster_1/pattern_124.4658099999999995e-06
Yy1
Pattern NameModiscoSignificance
metacluster_1/pattern_121.0663499999999999e-05
Zfp42
Pattern NameModiscoSignificance
metacluster_1/pattern_120.013666
Thap11
Pattern NameModiscoSignificance
metacluster_1/pattern_137.51704e-21
Zfp143
Pattern NameModiscoSignificance
metacluster_1/pattern_131.1728200000000001e-20
Tbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_138.13551e-13
Arntl
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00740913
Tfeb
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000533959
Mitf
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00138785
Clock
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00036484
Bhlhe40
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0128768
Arnt
Pattern NameModiscoSignificance
metacluster_1/pattern_150.051071
Srebf2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00481909
Npas2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00481909
Tcfl5
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0184675
Mycn
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0237163
Rxrg
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0270988
Myc
Pattern NameModiscoSignificance
metacluster_1/pattern_150.038535599999999996
Max
Pattern NameModiscoSignificance
metacluster_1/pattern_150.029395499999999998
Creb3l2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.029395499999999998
Bhlhe41
Pattern NameModiscoSignificance
metacluster_1/pattern_150.029395499999999998
Nr1h4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.034214999999999995
Rxrb
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0377858
Pou2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Pou5f1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0312144
metacluster_1/pattern_200.030201599999999995
Pou2f2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0181563
metacluster_1/pattern_200.030201599999999995
Nanog
Pattern NameModiscoSignificance
metacluster_1/pattern_160.013161700000000002
metacluster_1/pattern_200.030201599999999995
Pou2f3
Pattern NameModiscoSignificance
metacluster_1/pattern_160.016913099999999997
Lhx3
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0236002
Evx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0236002
Rax
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0383849
Lhx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0491664
Pou3f1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Otp
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0449657
Pou1f1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0524832
Rhox6
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0451339
Phox2b
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0451339
Vsx1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0460386
Nkx1-2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0460386
Phox2a
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0460386
Vsx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0460386
Lhx9
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0467059
Hoxa2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.047054
Emx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Prrx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Noto
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Lbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Gbx1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Isl1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Prrx1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0494977
Hoxc5
Pattern NameModiscoSignificance
metacluster_1/pattern_160.051103300000000004
En2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0524832
Shox2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Pou3f2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Isx
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Arx
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Esx1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.059852999999999996
Uncx
Pattern NameModiscoSignificance
metacluster_1/pattern_160.059852999999999996
Jund
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00936751
Fosb
Pattern NameModiscoSignificance
metacluster_1/pattern_177.5508e-07
Junb
Pattern NameModiscoSignificance
metacluster_1/pattern_170.031627499999999996
Fos
Pattern NameModiscoSignificance
metacluster_1/pattern_172.2325099999999997e-06
Batf
Pattern NameModiscoSignificance
metacluster_1/pattern_170.010919700000000001
Bach2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00103109
Nfe2l2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00362913
Nfe2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00336267
Bach1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00399794
Mafa
Pattern NameModiscoSignificance
metacluster_1/pattern_170.015685499999999998
Mafk
Pattern NameModiscoSignificance
metacluster_1/pattern_170.028355099999999998
Mafg
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0578001
Zbtb33
Pattern NameModiscoSignificance
metacluster_1/pattern_181.21838e-06
Mef2d
Pattern NameModiscoSignificance
metacluster_1/pattern_193.9540699999999996e-10
Mef2c
Pattern NameModiscoSignificance
metacluster_1/pattern_194.06156e-09
Mef2a
Pattern NameModiscoSignificance
metacluster_1/pattern_190.000116966
Tead4
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00140692
Tead1
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00061629
Tead2
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00867262
Six2
Pattern NameModiscoSignificance
metacluster_1/pattern_223.95781e-09
Six1
Pattern NameModiscoSignificance
metacluster_1/pattern_221.6611699999999998e-07
Six4
Pattern NameModiscoSignificance
metacluster_1/pattern_225.09606e-05
Six6
Pattern NameModiscoSignificance
metacluster_1/pattern_220.048775400000000003
Rela
Pattern NameModiscoSignificance
metacluster_1/pattern_230.021906799999999997
In [6]:
display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)
Number of CISBP TFs obtained by TF-MoDISco and Homer
Shared TFs between TF-MoDISco and Homer: #88
TF NameModiscoHomer
Rfx4
Pattern NameModiscoSignificance
metacluster_1/pattern_70.000163334
metacluster_1/pattern_140.059048699999999996
Pattern NameHomerSignificance
motif3.motif0.00011197899999999999
Tcf4
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0362909
metacluster_1/pattern_230.0558234
Pattern NameHomerSignificance
motif10.motif0.05376469999999999
Sox3
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00130416
Pattern NameHomerSignificance
motif14.motif0.00821848
Ptf1a
Pattern NameModiscoSignificance
metacluster_1/pattern_10.033243
metacluster_1/pattern_50.024084400000000002
Pattern NameHomerSignificance
motif10.motif0.0158857
Myf5
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0392142
Pattern NameHomerSignificance
motif10.motif0.014336700000000003
Nkx1-2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0460386
Pattern NameHomerSignificance
motif7.motif0.040392199999999996
Sp5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0314884
metacluster_1/pattern_230.018549799999999998
Pattern NameHomerSignificance
motif4.motif0.00810103
Sox9
Pattern NameModiscoSignificance
metacluster_1/pattern_46.64914e-11
Pattern NameHomerSignificance
motif14.motif0.000161443
Rax
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0383849
Pattern NameHomerSignificance
motif7.motif0.0409827
Emx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Pattern NameHomerSignificance
motif7.motif0.0394772
Klf1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0315223
Pattern NameHomerSignificance
motif4.motif0.027436900000000004
Sp3
Pattern NameModiscoSignificance
metacluster_1/pattern_11.73675e-07
metacluster_1/pattern_80.000493501
metacluster_1/pattern_117.989560000000001e-05
metacluster_1/pattern_120.00032123
metacluster_1/pattern_150.000153082
metacluster_1/pattern_180.00227898
Pattern NameHomerSignificance
motif4.motif9.75929e-06
Atf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.014312299999999998
metacluster_1/pattern_150.0299532
Pattern NameHomerSignificance
motif15.motif0.044177499999999995
E2f7
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0103069
Pattern NameHomerSignificance
motif4.motif0.0412184
Klf4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.052954499999999995
Pattern NameHomerSignificance
motif4.motif0.0266603
En2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0524832
Pattern NameHomerSignificance
motif7.motif0.0409827
E2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00953725
Pattern NameHomerSignificance
motif4.motif0.00222375
Sox2
Pattern NameModiscoSignificance
metacluster_1/pattern_40.000857468
metacluster_1/pattern_160.031278700000000006
metacluster_1/pattern_200.0436557
Pattern NameHomerSignificance
motif14.motif0.0130589
Sox6
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00467444
Pattern NameHomerSignificance
motif14.motif0.00524018
Tcf12
Pattern NameModiscoSignificance
metacluster_1/pattern_50.046899699999999996
Pattern NameHomerSignificance
motif10.motif0.058119000000000004
Creb5
Pattern NameModiscoSignificance
metacluster_1/pattern_92.0972799999999997e-06
Pattern NameHomerSignificance
motif15.motif0.0161649
Egr1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00618327
metacluster_1/pattern_80.0275082
metacluster_1/pattern_150.038535599999999996
Pattern NameHomerSignificance
motif4.motif0.0351785
Rfx3
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0281915
metacluster_1/pattern_140.00343446
Pattern NameHomerSignificance
motif3.motif0.0248173
Atf7
Pattern NameModiscoSignificance
metacluster_1/pattern_94.39542e-05
metacluster_1/pattern_150.0163207
Pattern NameHomerSignificance
motif15.motif0.0279199
Isl1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Pattern NameHomerSignificance
motif7.motif0.0445373
Sp4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00240255
metacluster_1/pattern_120.03359790000000001
metacluster_1/pattern_150.00981758
metacluster_1/pattern_230.058727800000000004
Pattern NameHomerSignificance
motif4.motif0.00344968
Sp2
Pattern NameModiscoSignificance
metacluster_1/pattern_15.9913e-08
metacluster_1/pattern_84.3748e-05
metacluster_1/pattern_111.06651e-05
metacluster_1/pattern_122.3389899999999998e-05
metacluster_1/pattern_155.78443e-06
metacluster_1/pattern_180.00012886
metacluster_1/pattern_230.040313
Pattern NameHomerSignificance
motif4.motif5.286230000000001e-06
Jdp2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.000244088
metacluster_1/pattern_150.0552789
metacluster_1/pattern_170.000394562
Pattern NameHomerSignificance
motif15.motif0.05165549999999999
Arx
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Pattern NameHomerSignificance
motif7.motif0.0394772
Klf6
Pattern NameModiscoSignificance
metacluster_1/pattern_17.9551e-05
metacluster_1/pattern_80.0580717
metacluster_1/pattern_150.0557548
Pattern NameHomerSignificance
motif4.motif0.00131608
Sp1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.000374055
metacluster_1/pattern_80.000509476
metacluster_1/pattern_117.989560000000001e-05
metacluster_1/pattern_120.00032123
metacluster_1/pattern_153.38469e-06
metacluster_1/pattern_180.00140662
metacluster_1/pattern_230.00358638
Pattern NameHomerSignificance
motif4.motif0.00172748
Atoh1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0116466
Pattern NameHomerSignificance
motif10.motif0.0211572
Hoxa2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.047054
Pattern NameHomerSignificance
motif7.motif0.0580236
Maz
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0192137
metacluster_1/pattern_230.018549799999999998
Pattern NameHomerSignificance
motif4.motif0.029513599999999997
Lyl1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0363287
Pattern NameHomerSignificance
motif10.motif0.0366819
Tgif1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.019671
Pattern NameHomerSignificance
motif10.motif0.014336700000000003
Zbtb17
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00343126
metacluster_1/pattern_80.022863400000000002
metacluster_1/pattern_110.024713
metacluster_1/pattern_120.00803603
metacluster_1/pattern_150.00482961
metacluster_1/pattern_180.0420737
Pattern NameHomerSignificance
motif4.motif0.00344968
Rfx1
Pattern NameModiscoSignificance
metacluster_1/pattern_71.70821e-06
metacluster_1/pattern_80.00476935
metacluster_1/pattern_110.0358116
metacluster_1/pattern_120.018831999999999998
metacluster_1/pattern_150.012224200000000001
Pattern NameHomerSignificance
motif3.motif5.50325e-07
Prrx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Pattern NameHomerSignificance
motif7.motif0.0409827
Tbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_138.13551e-13
Pattern NameHomerSignificance
motif2.motif2.2723000000000003e-05
Ascl2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00454242
Pattern NameHomerSignificance
motif10.motif0.0159364
Sox17
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00103739
Pattern NameHomerSignificance
motif14.motif0.0130589
Zbtb33
Pattern NameModiscoSignificance
metacluster_1/pattern_181.21838e-06
Pattern NameHomerSignificance
motif16.motif0.000249814
Pou5f1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0312144
metacluster_1/pattern_200.030201599999999995
Pattern NameHomerSignificance
motif14.motif0.00763436
Klf5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00874622
Pattern NameHomerSignificance
motif4.motif0.0393408
Vsx1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0460386
Pattern NameHomerSignificance
motif7.motif0.0409827
Klf15
Pattern NameModiscoSignificance
metacluster_1/pattern_10.010073899999999998
metacluster_1/pattern_230.014332399999999999
Pattern NameHomerSignificance
motif4.motif0.016871900000000002
Ctcf
Pattern NameModiscoSignificance
metacluster_1/pattern_01.65588e-09
metacluster_1/pattern_80.010463799999999999
metacluster_1/pattern_150.04761
Pattern NameHomerSignificance
motif1.motif4.8193000000000004e-05
Uncx
Pattern NameModiscoSignificance
metacluster_1/pattern_160.059852999999999996
Pattern NameHomerSignificance
motif7.motif0.0409827
Tal1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0104842
Pattern NameHomerSignificance
motif10.motif0.0158857
Tcf3
Pattern NameModiscoSignificance
metacluster_1/pattern_50.042984100000000004
Pattern NameHomerSignificance
motif10.motif0.05376469999999999
Klf7
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00159558
Pattern NameHomerSignificance
motif4.motif0.00313974
E2f4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00105481
Pattern NameHomerSignificance
motif4.motif0.00011171799999999999
Nanog
Pattern NameModiscoSignificance
metacluster_1/pattern_160.013161700000000002
metacluster_1/pattern_200.030201599999999995
Pattern NameHomerSignificance
motif14.motif0.00723855
Klf8
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00261259
Pattern NameHomerSignificance
motif4.motif0.00621089
Sox10
Pattern NameModiscoSignificance
metacluster_1/pattern_40.000857468
Pattern NameHomerSignificance
motif14.motif0.00106418
Rfx2
Pattern NameModiscoSignificance
metacluster_1/pattern_71.95931e-07
metacluster_1/pattern_142.58476e-06
Pattern NameHomerSignificance
motif3.motif1.3655e-05
Tcf7l1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.013948400000000001
Pattern NameHomerSignificance
motif10.motif0.014336700000000003
Neurod1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.019671
Pattern NameHomerSignificance
motif10.motif0.031742900000000004
Klf12
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0583595
Pattern NameHomerSignificance
motif4.motif0.00886094
Olig2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0406894
Pattern NameHomerSignificance
motif10.motif0.031742900000000004
Thap11
Pattern NameModiscoSignificance
metacluster_1/pattern_137.51704e-21
Pattern NameHomerSignificance
motif2.motif1.43122e-06
Klf3
Pattern NameModiscoSignificance
metacluster_1/pattern_14.48927e-06
metacluster_1/pattern_80.0111609
metacluster_1/pattern_110.00328554
metacluster_1/pattern_120.03359790000000001
metacluster_1/pattern_150.00123954
Pattern NameHomerSignificance
motif4.motif0.000426832
Zfp143
Pattern NameModiscoSignificance
metacluster_1/pattern_131.1728200000000001e-20
Pattern NameHomerSignificance
motif2.motif2.0392e-06
Rfx7
Pattern NameModiscoSignificance
metacluster_1/pattern_70.011654799999999998
metacluster_1/pattern_140.035436199999999994
Pattern NameHomerSignificance
motif3.motif0.0109094
Shox2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Pattern NameHomerSignificance
motif7.motif0.0394772
Myog
Pattern NameModiscoSignificance
metacluster_1/pattern_50.027005599999999998
Pattern NameHomerSignificance
motif10.motif0.0158857
Creb1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0008602460000000001
metacluster_1/pattern_150.0377858
Pattern NameHomerSignificance
motif15.motif0.023744400000000002
Lhx9
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0467059
Pattern NameHomerSignificance
motif7.motif0.0427586
Crem
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00367041
Pattern NameHomerSignificance
motif15.motif0.023744400000000002
Egr2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0194843
metacluster_1/pattern_120.03359790000000001
Pattern NameHomerSignificance
motif4.motif0.0379186
Sox4
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00747998
Pattern NameHomerSignificance
motif14.motif0.027494099999999997
Nrf1
Pattern NameModiscoSignificance
metacluster_1/pattern_62.87258e-07
Pattern NameHomerSignificance
motif20.motif6.16586e-06
Fli1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0215359
metacluster_1/pattern_30.000929158
metacluster_1/pattern_80.0565404
Pattern NameHomerSignificance
motif6.motif0.042403300000000005
Phox2b
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0451339
Pattern NameHomerSignificance
motif7.motif0.0580236
Lhx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0491664
Pattern NameHomerSignificance
motif7.motif0.0566153
Prrx1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0494977
Pattern NameHomerSignificance
motif7.motif0.0394772
Myf6
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00454242
Pattern NameHomerSignificance
motif10.motif0.0211572
Rfx6
Pattern NameModiscoSignificance
metacluster_1/pattern_70.020696
metacluster_1/pattern_140.00110876
Pattern NameHomerSignificance
motif3.motif0.0266091
Wt1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00567196
metacluster_1/pattern_80.022863400000000002
metacluster_1/pattern_110.0209631
metacluster_1/pattern_120.021183
metacluster_1/pattern_150.00968344
metacluster_1/pattern_180.034488599999999994
metacluster_1/pattern_230.010500399999999998
Pattern NameHomerSignificance
motif4.motif0.00361233
Nfia
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00232045
Pattern NameHomerSignificance
motif13.motif0.00119801
Myod1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0102762
Pattern NameHomerSignificance
motif10.motif0.0159364
Ascl1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00454242
Pattern NameHomerSignificance
motif10.motif0.026306200000000002
Atf2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.000161907
metacluster_1/pattern_150.029395499999999998
Pattern NameHomerSignificance
motif15.motif0.028424400000000002
Neurod2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00641608
Pattern NameHomerSignificance
motif10.motif0.0362397
Ctcfl
Pattern NameModiscoSignificance
metacluster_1/pattern_01.65588e-09
metacluster_1/pattern_80.00476935
metacluster_1/pattern_110.0110822
metacluster_1/pattern_150.020934
Pattern NameHomerSignificance
motif1.motif0.000513992
motif4.motif0.0505377
Gbx1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Pattern NameHomerSignificance
motif7.motif0.0409827
Bhlha15
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00582295
Pattern NameHomerSignificance
motif10.motif0.0159364
Unique TF-MoDISco TFs: #121
TF NameModiscoHomer
Nr1h4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.034214999999999995
Absent
Nfe2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00336267
Absent
Nfic
Pattern NameModiscoSignificance
metacluster_1/pattern_20.0104822
Absent
Etv3
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00135927
Absent
Fos
Pattern NameModiscoSignificance
metacluster_1/pattern_172.2325099999999997e-06
Absent
XP_911724.4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00116048
Absent
Six4
Pattern NameModiscoSignificance
metacluster_1/pattern_225.09606e-05
Absent
Mafk
Pattern NameModiscoSignificance
metacluster_1/pattern_170.028355099999999998
Absent
Atf3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0102863
metacluster_1/pattern_177.5508e-07
Absent
Zfp42
Pattern NameModiscoSignificance
metacluster_1/pattern_120.013666
Absent
Pou1f1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0524832
Absent
Zfx
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00242505
metacluster_1/pattern_60.0220442
metacluster_1/pattern_80.00937944
metacluster_1/pattern_110.014137700000000001
metacluster_1/pattern_120.00226813
metacluster_1/pattern_150.028723099999999998
metacluster_1/pattern_180.00657396
Absent
Ddit3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0539247
Absent
Neurog2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0102762
Absent
Cebpg
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0440773
Absent
Otp
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0449657
Absent
Tead1
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00061629
Absent
Elf5
Pattern NameModiscoSignificance
metacluster_1/pattern_30.037238099999999996
Absent
Tfec
Pattern NameModiscoSignificance
metacluster_1/pattern_90.03754
metacluster_1/pattern_150.00223364
Absent
Zfp281
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0315223
Absent
Nfe2l2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00362913
Absent
Etv6
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0044659999999999995
Absent
Junb
Pattern NameModiscoSignificance
metacluster_1/pattern_170.031627499999999996
Absent
Cebpa
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0200274
Absent
Phox2a
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0460386
Absent
Bhlhe40
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0128768
Absent
Rxrg
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0270988
Absent
Lbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Absent
Fosb
Pattern NameModiscoSignificance
metacluster_1/pattern_177.5508e-07
Absent
Mafa
Pattern NameModiscoSignificance
metacluster_1/pattern_170.015685499999999998
Absent
Srebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.03754
metacluster_1/pattern_150.0076581
Absent
Six2
Pattern NameModiscoSignificance
metacluster_1/pattern_223.95781e-09
Absent
Tead4
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00140692
Absent
Mycn
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0237163
Absent
Lhx3
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0236002
Absent
Spi1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0385717
Absent
Pou3f2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Absent
Tef
Pattern NameModiscoSignificance
metacluster_1/pattern_90.015257399999999999
Absent
Mafb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00450582
metacluster_1/pattern_170.0502024
Absent
Tfap2b
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0593786
Absent
Bach1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00399794
Absent
Ehf
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0168272
Absent
Bhlhe41
Pattern NameModiscoSignificance
metacluster_1/pattern_150.029395499999999998
Absent
Srebf2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00481909
Absent
Tfeb
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000533959
Absent
Dbp
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0328365
Absent
Spdef
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0168272
Absent
Six6
Pattern NameModiscoSignificance
metacluster_1/pattern_220.048775400000000003
Absent
Taf1
Pattern NameModiscoSignificance
metacluster_1/pattern_124.4658099999999995e-06
Absent
Nfib
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00232045
Absent
Mef2c
Pattern NameModiscoSignificance
metacluster_1/pattern_194.06156e-09
Absent
Fosl1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.014312299999999998
metacluster_1/pattern_177.5508e-07
Absent
Arnt
Pattern NameModiscoSignificance
metacluster_1/pattern_150.051071
Absent
Hlf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00908518
Absent
Spib
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0436906
Absent
Cebpb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0414935
Absent
Tcfl5
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0184675
Absent
Myc
Pattern NameModiscoSignificance
metacluster_1/pattern_150.038535599999999996
Absent
Vsx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0460386
Absent
Foxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_108.16997e-06
Absent
Max
Pattern NameModiscoSignificance
metacluster_1/pattern_150.029395499999999998
Absent
Cebpd
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0546184
Absent
Erg
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000955355
Absent
Rhox6
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0451339
Absent
Pou2f2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0181563
metacluster_1/pattern_200.030201599999999995
Absent
Usf2
Pattern NameModiscoSignificance
metacluster_1/pattern_80.010179899999999999
metacluster_1/pattern_110.00988173
metacluster_1/pattern_150.00791649
metacluster_1/pattern_180.034488599999999994
Absent
Pou2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Absent
Elf2
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0139213
Absent
Evx2
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0236002
Absent
Mitf
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00138785
Absent
Yy1
Pattern NameModiscoSignificance
metacluster_1/pattern_121.0663499999999999e-05
Absent
Gmeb2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.052209000000000005
Absent
Arntl
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00740913
Absent
Tead2
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00867262
Absent
Jun
Pattern NameModiscoSignificance
metacluster_1/pattern_90.03754
metacluster_1/pattern_172.5795100000000003e-07
Absent
Creb3l2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.029395499999999998
Absent
Mafg
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0578001
Absent
Isx
Pattern NameModiscoSignificance
metacluster_1/pattern_160.05757759999999999
Absent
Elf1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000860636
Absent
Noto
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Absent
Rxrb
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0377858
Absent
Mlx
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0546184
metacluster_1/pattern_150.0270988
Absent
Pou3f1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0482801
Absent
Gabpa
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000855563
Absent
Snai2
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0362582
Absent
Spic
Pattern NameModiscoSignificance
metacluster_1/pattern_30.04871369999999999
Absent
Etv1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000860636
Absent
Elk1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0007953680000000001
Absent
Elk4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000855563
Absent
Mbd2
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0105655
Absent
Usf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0546184
metacluster_1/pattern_150.035438300000000006
Absent
Nfil3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.013024
Absent
Elf4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00865338
Absent
Rela
Pattern NameModiscoSignificance
metacluster_1/pattern_230.021906799999999997
Absent
Bach2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00103109
Absent
Etv5
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000281824
Absent
Jund
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00936751
Absent
Ets1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000860636
Absent
Clock
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00036484
Absent
Batf
Pattern NameModiscoSignificance
metacluster_1/pattern_170.010919700000000001
Absent
Nfyb
Pattern NameModiscoSignificance
metacluster_1/pattern_101.25718e-09
Absent
Elf3
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0544942
Absent
Etv2
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000929158
Absent
Fosl2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0106333
metacluster_1/pattern_173.1984000000000004e-05
Absent
Fev
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000281824
Absent
Pou2f3
Pattern NameModiscoSignificance
metacluster_1/pattern_160.016913099999999997
Absent
Hoxc5
Pattern NameModiscoSignificance
metacluster_1/pattern_160.051103300000000004
Absent
Tfe3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0293393
metacluster_1/pattern_150.00223364
Absent
Nfyc
Pattern NameModiscoSignificance
metacluster_1/pattern_108.16997e-06
Absent
Mef2d
Pattern NameModiscoSignificance
metacluster_1/pattern_193.9540699999999996e-10
Absent
Atf4
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0546184
Absent
Six1
Pattern NameModiscoSignificance
metacluster_1/pattern_221.6611699999999998e-07
Absent
Elk3
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0005616519999999999
Absent
Snai1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0493776
Absent
Etv4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00135927
Absent
Pbx3
Pattern NameModiscoSignificance
metacluster_1/pattern_100.000254852
Absent
Npas2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00481909
Absent
Mef2a
Pattern NameModiscoSignificance
metacluster_1/pattern_190.000116966
Absent
Esx1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.059852999999999996
Absent
Nfya
Pattern NameModiscoSignificance
metacluster_1/pattern_109.43623e-06
Absent
Mxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_80.029586900000000003
metacluster_1/pattern_110.00308173
metacluster_1/pattern_150.00481909
Absent
Unique Homer TFs: #31
TF NameModiscoHomer
Barhl1Absent
Pattern NameHomerSignificance
motif7.motif0.0427586
Gsx2Absent
Pattern NameHomerSignificance
motif7.motif0.0409827
Tcf7l2Absent
Pattern NameHomerSignificance
motif14.motif0.0596447
Msx1Absent
Pattern NameHomerSignificance
motif7.motif0.0409827
En1Absent
Pattern NameHomerSignificance
motif7.motif0.0445373
Pax7Absent
Pattern NameHomerSignificance
motif7.motif0.0458328
Msx2Absent
Pattern NameHomerSignificance
motif7.motif0.0394772
Evx1Absent
Pattern NameHomerSignificance
motif7.motif0.0427586
Vax1Absent
Pattern NameHomerSignificance
motif7.motif0.0427586
Lef1Absent
Pattern NameHomerSignificance
motif14.motif0.0596447
NoboxAbsent
Pattern NameHomerSignificance
motif7.motif0.0409827
Msx3Absent
Pattern NameHomerSignificance
motif7.motif0.0394772
Pknox2Absent
Pattern NameHomerSignificance
motif10.motif0.0307268
Meis2Absent
Pattern NameHomerSignificance
motif10.motif0.0342759
Barhl2Absent
Pattern NameHomerSignificance
motif7.motif0.0394772
Meis3Absent
Pattern NameHomerSignificance
motif10.motif0.026306200000000002
Alx4Absent
Pattern NameHomerSignificance
motif7.motif0.0427586
Foxd1Absent
Pattern NameHomerSignificance
motif14.motif0.029741700000000003
Tcf21Absent
Pattern NameHomerSignificance
motif10.motif0.0206951
Vax2Absent
Pattern NameHomerSignificance
motif7.motif0.0409827
Lhx8Absent
Pattern NameHomerSignificance
motif7.motif0.0566153
Alx1Absent
Pattern NameHomerSignificance
motif7.motif0.0513047
Tfap4Absent
Pattern NameHomerSignificance
motif10.motif0.0206951
Gbx2Absent
Pattern NameHomerSignificance
motif7.motif0.0409827
Hoxd1Absent
Pattern NameHomerSignificance
motif7.motif0.0409827
Nkx1-1Absent
Pattern NameHomerSignificance
motif7.motif0.0394772
Nhlh2Absent
Pattern NameHomerSignificance
motif10.motif0.026230400000000004
Dlx2Absent
Pattern NameHomerSignificance
motif7.motif0.0580236
FiglaAbsent
Pattern NameHomerSignificance
motif10.motif0.05376469999999999
Dlx5Absent
Pattern NameHomerSignificance
motif7.motif0.0427586
SryAbsent
Pattern NameHomerSignificance
motif14.motif0.0596447