# Parameters
data_name = "NPC;G4;A;GEO"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_171-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_171-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 19:19:29,783 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	neural progenitor cells(G4)
Cell Group	Neural Cells and Tissues
Experiment Name	ATAC
Experiment Group	GEO

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	223443	165734	6.8427	148569741	26734385	0.18	12993008	0.0875	57621907	0.3879

Modelling Metadata

Metric	Value
auPRC	0.6077
Calibrated Recall at 50% FDR	0.237
Number of Positive Examples in Test Data	109057
Number of Negative Examples in Test Data	7961794
Imbalance Ratio in Test Data	0.0135
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #26

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 3290 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp3, Sp1, Sp4, Klf3, Klf4, E2f4, Zbtb17, Egr1, Klf6, Sp5, Klf7, Klf5, Egr2, Wt1, Klf8, Klf12, Zfp281, Klf1, Maz, E2f1, Egr3, Klf15, Srebf2, Zfx, Sall4, Ctcfl
metacluster_1/pattern_1 # seqlets: 2919 SequenceContrib ScoresHyp_Contrib Scores	Ctcf
metacluster_1/pattern_2 # seqlets: 1850 SequenceContrib ScoresHyp_Contrib Scores	Nfib, Nfia, Nfic
metacluster_1/pattern_3 # seqlets: 1463 SequenceContrib ScoresHyp_Contrib Scores	Rfx2, Rfx1, Rfx3, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_4 # seqlets: 1163 SequenceContrib ScoresHyp_Contrib Scores	Sox9, Sox17, Sox2, Sox3, Sox4, Sox6, Sox10
metacluster_1/pattern_5 # seqlets: 1151 SequenceContrib ScoresHyp_Contrib Scores	Ptf1a, Ascl2, Ascl1, Bhlha15, Tcf3, Myog, Atoh1, Myf6, Tcf7l1, Tcf12, Tal1, Myod1, Nhlh1, Nhlh2, Tcf4, Lyl1, Olig2, Neurod2, Neurog2, Myf5, Snai1, Neurod1, Snai2, Tgif1, Figla
metacluster_1/pattern_6 # seqlets: 1131 SequenceContrib ScoresHyp_Contrib Scores	Atf7, Atf1, Atf2, Creb1, Creb5, Jdp2, Crem, Tfec, Srebf1, Rxrb, Bhlhe40, Mitf, Usf1, Dbp, Mlx, Nfil3, Jun, Tfe3, Hlf, Tef, Atf3, Mafb, Usf2, Creb3l2, Cebpb, Cebpa, Tfeb
metacluster_1/pattern_7 # seqlets: 1089 SequenceContrib ScoresHyp_Contrib Scores	Tead4, Tead2, Tead1
metacluster_1/pattern_8 # seqlets: 1078 SequenceContrib ScoresHyp_Contrib Scores	Gabpa, Fli1, Elk1, Elk4, Ets1, Erg, Elk3, Fev, Etv5, Elf1, Etv4, Etv1, Elf2, Etv6, Etv2, Etv3, XP_911724.4, Ehf, Elf5, Spi1, Elf4, Spdef, Elf3
metacluster_1/pattern_9 # seqlets: 1049 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_10 # seqlets: 822 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_11 # seqlets: 601 SequenceContrib ScoresHyp_Contrib Scores	Mxi1
metacluster_1/pattern_12 # seqlets: 591 SequenceContrib ScoresHyp_Contrib Scores	Bcl6, Stat4
metacluster_1/pattern_13 # seqlets: 545 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42
metacluster_1/pattern_14 # seqlets: 404 SequenceContrib ScoresHyp_Contrib Scores	Thap11, Zfp143, Tbx2
metacluster_1/pattern_15 # seqlets: 279 SequenceContrib ScoresHyp_Contrib Scores	Fosl2, Fosb, Fosl1, Junb, Batf, Jund, Fos, Bach2, Nfe2l2, Bach1, Nfe2, Mafk, Mafa, Mafg, Maff, Maf, Nfatc1, Nr1d2
metacluster_1/pattern_16 # seqlets: 256 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2, Pou5f1, Nanog, Pou2f1
metacluster_1/pattern_17 # seqlets: 229 SequenceContrib ScoresHyp_Contrib Scores	Mef2d, Mef2c, Mef2a
metacluster_1/pattern_18 # seqlets: 203 SequenceContrib ScoresHyp_Contrib Scores	Pou2f3, Vsx2, Evx2, Rax, Lhx3, Lhx2, Nkx1-2, Emx2, Hoxa2, Otp, En2, Prrx1, Phox2b, Lhx9, Pou3f1, Rhox6, Vsx1, Phox2a, Gbx1, Prrx2, Lhx8, Lbx2, Shox2, Noto, Esx1, Arx, Pou1f1, Pax7, Gsx2, Pdx1, Isx, Uncx, Gbx2, Lhx4, Evx1, Pax6, Nkx1-1, Isl1, Vax2, Hoxc5, Hoxd3, Pou3f2, Alx1, Alx3, Prop1, Alx4, Vax1, Hoxa1, Hoxb3, Lhx6, Lmx1b, Pax4, Barx1, En1, Hoxb4, Hoxa3, Nkx6-1, Hoxd1, Nobox, Msx3, Dlx3, Arid3b, Msx2, Msx1, Sox1
metacluster_1/pattern_19 # seqlets: 169 SequenceContrib ScoresHyp_Contrib Scores	Myc
metacluster_1/pattern_20 # seqlets: 126 SequenceContrib ScoresHyp_Contrib Scores	Mbd2
metacluster_1/pattern_21 # seqlets: 106 SequenceContrib ScoresHyp_Contrib Scores	Tfap2b
metacluster_1/pattern_22 # seqlets: 56 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_23 # seqlets: 59 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf8, Prdm1, Irf2, Irf7, Irf4, Stat1, Stat2, Irf9, Spib, Irf3, Irf5
metacluster_1/pattern_24 # seqlets: 47 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_25 # seqlets: 38 SequenceContrib ScoresHyp_Contrib Scores	Rest

Click here for Motifs by TF-MoDISco: #243

TF Name	Pattern(s)
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_0 3.68135e-09 metacluster_1/pattern_11 0.015102299999999999 metacluster_1/pattern_13 0.000180393 metacluster_1/pattern_19 2.8718e-06 metacluster_1/pattern_20 2.98379e-08 metacluster_1/pattern_21 7.90158e-06 metacluster_1/pattern_24 3.8174e-07
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_0 5.68222e-09 metacluster_1/pattern_13 0.00463744 metacluster_1/pattern_19 5.70658e-05 metacluster_1/pattern_20 7.07799e-07 metacluster_1/pattern_21 2.95746e-05 metacluster_1/pattern_24 1.02708e-05
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00043889999999999993 metacluster_1/pattern_13 0.00530663 metacluster_1/pattern_19 5.70658e-05 metacluster_1/pattern_20 0.0574802 metacluster_1/pattern_21 0.00010679799999999999 metacluster_1/pattern_24 6.979780000000001e-06
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00159623 metacluster_1/pattern_13 0.0299973 metacluster_1/pattern_20 0.027859699999999998 metacluster_1/pattern_24 0.05390790000000001
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_0 5.44721e-07 metacluster_1/pattern_13 0.033981 metacluster_1/pattern_19 0.00599426 metacluster_1/pattern_20 0.000374786 metacluster_1/pattern_21 0.00495358 metacluster_1/pattern_24 0.00233883
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00121375
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00037647099999999997
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000438853 metacluster_1/pattern_19 0.0113606 metacluster_1/pattern_20 0.000429785 metacluster_1/pattern_21 0.00495358 metacluster_1/pattern_24 0.0075872
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0401756 metacluster_1/pattern_20 0.0158596 metacluster_1/pattern_24 0.0201545
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000488543 metacluster_1/pattern_20 0.0114819 metacluster_1/pattern_21 0.0483037 metacluster_1/pattern_24 0.024789099999999998
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000723632 metacluster_1/pattern_20 0.032780300000000005 metacluster_1/pattern_24 0.0201545
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00108691
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0010967000000000001
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0334403 metacluster_1/pattern_13 0.0299973
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0016158000000000001 metacluster_1/pattern_19 0.05523290000000001 metacluster_1/pattern_20 0.00258107 metacluster_1/pattern_21 0.00847988 metacluster_1/pattern_24 0.0027228
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00173624
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00193758
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00506291
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.03539
Maz	Pattern Name Modisco Significance metacluster_1/pattern_0 0.010297 metacluster_1/pattern_20 0.046177499999999996 metacluster_1/pattern_24 0.0201545
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.010768600000000001
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0235005
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_0 0.028762400000000004 metacluster_1/pattern_20 0.03991 metacluster_1/pattern_24 0.0272528
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0398861 metacluster_1/pattern_6 0.057395
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_0 0.057256100000000004 metacluster_1/pattern_10 0.059614999999999994 metacluster_1/pattern_13 0.012613899999999999 metacluster_1/pattern_19 0.0163635 metacluster_1/pattern_20 0.00430563 metacluster_1/pattern_21 0.00790427 metacluster_1/pattern_24 0.0201545
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0593288
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0595168 metacluster_1/pattern_1 5.34418e-10 metacluster_1/pattern_19 0.014935499999999999 metacluster_1/pattern_20 0.00545343 metacluster_1/pattern_21 0.000162872 metacluster_1/pattern_24 0.020966099999999998
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_1 5.34418e-10 metacluster_1/pattern_20 0.0556047 metacluster_1/pattern_21 0.00677087
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_2 5.54994e-06
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000184358
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00204573
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_3 3.08632e-06 metacluster_1/pattern_12 5.41379e-05
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_3 6.43612e-06 metacluster_1/pattern_13 0.0202486 metacluster_1/pattern_19 0.0162923 metacluster_1/pattern_20 0.036835599999999996 metacluster_1/pattern_21 0.014278 metacluster_1/pattern_24 0.0101516
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0240583 metacluster_1/pattern_12 0.00846911
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000105741 metacluster_1/pattern_12 0.0454796
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0131218 metacluster_1/pattern_12 0.0454796
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_3 0.020664500000000002 metacluster_1/pattern_12 6.12041e-05
Sox9	Pattern Name Modisco Significance metacluster_1/pattern_4 1.89066e-07
Sox17	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0007031510000000001
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0007031510000000001
Sox3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000828603
Sox4	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0159309
Sox6	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00756561
Sox10	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00480942
Ptf1a	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00645957
Ascl2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00244065
Ascl1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00194302
Bhlha15	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000617165
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.011795100000000001
Myog	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0155791
Atoh1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00362525
Myf6	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00244065
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00272578
Tcf12	Pattern Name Modisco Significance metacluster_1/pattern_5 0.014310900000000001
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00362525
Myod1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00724151
Nhlh1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00724151
Nhlh2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00797547
Tcf4	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0107399
Lyl1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00864332
Olig2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.03830069999999999
Neurod2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0112142
Neurog2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0191429
Myf5	Pattern Name Modisco Significance metacluster_1/pattern_5 0.019476
Snai1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.021516
Neurod1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0364047
Snai2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0392406
Tgif1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0468986
Figla	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0511216
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00169367
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.057395
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00207821
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00186256
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_6 0.000536218
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00747276 metacluster_1/pattern_15 0.00010022299999999999
Crem	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0082148
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0072503
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.05831569999999999
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0173079
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_6 0.031028399999999998
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_6 0.021621
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.022643299999999998
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0588428
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_6 0.027388799999999998
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.027388799999999998
Jun	Pattern Name Modisco Significance metacluster_1/pattern_6 0.031028399999999998 metacluster_1/pattern_15 7.52086e-06
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0314847
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0314847
Tef	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0370027
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0376934 metacluster_1/pattern_15 2.9881599999999998e-06
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0415885 metacluster_1/pattern_15 0.00699548
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0596442 metacluster_1/pattern_11 0.023614 metacluster_1/pattern_19 0.00914297 metacluster_1/pattern_20 0.010538299999999999 metacluster_1/pattern_21 0.00495358 metacluster_1/pattern_24 0.0200142
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0445836
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.057395
Cebpa	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0588428
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0596442
Tead4	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000543075
Tead2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0106266
Tead1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.011954799999999998
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00110878
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00166097
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00100875
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00131549
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00166097
Erg	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00166097
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0008452189999999999
Fev	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00039923800000000006
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000493839
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000829152
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00236865
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00131549
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0153811
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0074608
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0018695999999999997
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00236865
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00236865
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0129732
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.035819
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.056993499999999996
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00933103
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0179105
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0572768
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_9 9.246749999999999e-14
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_9 1.0077899999999999e-10
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_9 3.83219e-10
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_9 1.39602e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_9 7.77525e-06
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_10 3.70042e-07
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.014088900000000001 metacluster_1/pattern_13 0.0390907 metacluster_1/pattern_19 0.00238543 metacluster_1/pattern_20 0.019036599999999997 metacluster_1/pattern_21 0.0100489 metacluster_1/pattern_24 0.0201545
Bcl6	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0454796
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_12 0.050950300000000004
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_13 3.3880699999999994e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_13 1.07836e-05
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_13 0.012613899999999999
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_14 2.1566999999999997e-19
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_14 2.1566999999999997e-19
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_14 1.70582e-12
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_15 7.52086e-06
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_15 6.267380000000001e-06
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_15 6.267380000000001e-06
Junb	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0500509
Batf	Pattern Name Modisco Significance metacluster_1/pattern_15 0.000843268
Jund	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0145734
Fos	Pattern Name Modisco Significance metacluster_1/pattern_15 3.29873e-05
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_15 6.31788e-05
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0004931
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.000438717
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_15 0.000438717
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00248462
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00510406
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00510406
Maff	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00724076
Maf	Pattern Name Modisco Significance metacluster_1/pattern_15 0.014966
Nfatc1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.033191000000000005
Nr1d2	Pattern Name Modisco Significance metacluster_1/pattern_15 0.047396100000000004
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05702669999999999 metacluster_1/pattern_18 0.042293
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05702669999999999
Nanog	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05152090000000001
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05702669999999999 metacluster_1/pattern_18 0.030195099999999996
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_17 3.22375e-11
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_17 4.4713300000000006e-10
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000114318
Pou2f3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Vsx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Evx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Rax	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Lhx3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0381176
Lhx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0263468
Nkx1-2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Emx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Hoxa2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0452283
Otp	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
En2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359099
Prrx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Phox2b	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Lhx9	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Pou3f1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0442177
Rhox6	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997
Vsx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206
Phox2a	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0376209
Gbx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0279938
Prrx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.042293
Lhx8	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0358204
Lbx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0263468
Shox2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618
Noto	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0263468
Esx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0279938
Arx	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0279938
Pou1f1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.049647500000000004
Pax7	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0279938
Gsx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.030195099999999996
Pdx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0431018
Isx	Pattern Name Modisco Significance metacluster_1/pattern_18 0.030195099999999996
Uncx	Pattern Name Modisco Significance metacluster_1/pattern_18 0.054088300000000006
Gbx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0536159
Lhx4	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206
Evx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618
Pax6	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618
Nkx1-1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618
Isl1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618
Vax2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.031157099999999997
Hoxc5	Pattern Name Modisco Significance metacluster_1/pattern_18 0.031157099999999997
Hoxd3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359099
Pou3f2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.031157099999999997
Alx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206
Alx3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0333159
Prop1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206
Alx4	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206
Vax1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0376209
Hoxa1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.043767
Hoxb3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.043767
Lhx6	Pattern Name Modisco Significance metacluster_1/pattern_18 0.054088300000000006
Lmx1b	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0440585
Pax4	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0445645
Barx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0452283
En1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.046761800000000006
Hoxb4	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0468541
Hoxa3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0468541
Nkx6-1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.049647500000000004
Hoxd1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0507828
Nobox	Pattern Name Modisco Significance metacluster_1/pattern_18 0.052380899999999994
Msx3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.058594799999999995
Dlx3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.054088300000000006
Arid3b	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0562981
Msx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.058594799999999995
Msx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.05859580000000001
Sox1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0592418
Myc	Pattern Name Modisco Significance metacluster_1/pattern_19 0.053365800000000005
Mbd2	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0480174 metacluster_1/pattern_24 0.013762
Tfap2b	Pattern Name Modisco Significance metacluster_1/pattern_21 0.054861099999999996
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00013277799999999998
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00013277799999999998
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_23 0.000154842
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_23 0.0178879
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00021685099999999997
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00512537
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_23 0.0012937
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00198554
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00279508
Spib	Pattern Name Modisco Significance metacluster_1/pattern_23 0.010896799999999998
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_23 0.0359763
Irf5	Pattern Name Modisco Significance metacluster_1/pattern_23 0.0292971
Rest	Pattern Name Modisco Significance metacluster_1/pattern_25 4.35785e-11

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #88

TF Name	Modisco	Homer
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0018695999999999997	Pattern Name Homer Significance motif5.motif 0.0213363
Spib	Pattern Name Modisco Significance metacluster_1/pattern_23 0.010896799999999998	Pattern Name Homer Significance motif5.motif 0.0267129
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_0 3.68135e-09 metacluster_1/pattern_11 0.015102299999999999 metacluster_1/pattern_13 0.000180393 metacluster_1/pattern_19 2.8718e-06 metacluster_1/pattern_20 2.98379e-08 metacluster_1/pattern_21 7.90158e-06 metacluster_1/pattern_24 3.8174e-07	Pattern Name Homer Significance motif3.motif 0.0431018
Snai2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0392406	Pattern Name Homer Significance motif9.motif 0.0118121
Ptf1a	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00645957	Pattern Name Homer Significance motif9.motif 0.000668263
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0596442 metacluster_1/pattern_11 0.023614 metacluster_1/pattern_19 0.00914297 metacluster_1/pattern_20 0.010538299999999999 metacluster_1/pattern_21 0.00495358 metacluster_1/pattern_24 0.0200142	Pattern Name Homer Significance motif13.motif 0.0126024
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00362525	Pattern Name Homer Significance motif9.motif 0.00264118
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_14 2.1566999999999997e-19	Pattern Name Homer Significance motif4.motif 1.32513e-06
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0314847	Pattern Name Homer Significance motif13.motif 0.054105099999999996
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00207821	Pattern Name Homer Significance motif13.motif 0.029382299999999997
Lyl1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00864332	Pattern Name Homer Significance motif9.motif 0.0140197
Myf5	Pattern Name Modisco Significance metacluster_1/pattern_5 0.019476	Pattern Name Homer Significance motif9.motif 0.00294631
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00110878	Pattern Name Homer Significance motif5.motif 0.00864137
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0415885 metacluster_1/pattern_15 0.00699548	Pattern Name Homer Significance motif13.motif 0.046023800000000004
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_3 6.43612e-06 metacluster_1/pattern_13 0.0202486 metacluster_1/pattern_19 0.0162923 metacluster_1/pattern_20 0.036835599999999996 metacluster_1/pattern_21 0.014278 metacluster_1/pattern_24 0.0101516	Pattern Name Homer Significance motif2.motif 1.20748e-06
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_3 3.08632e-06 metacluster_1/pattern_12 5.41379e-05	Pattern Name Homer Significance motif2.motif 3.91538e-06
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_9 1.0077899999999999e-10	Pattern Name Homer Significance motif10.motif 0.0479327
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00100875	Pattern Name Homer Significance motif5.motif 0.00864137
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_1 5.34418e-10 metacluster_1/pattern_20 0.0556047 metacluster_1/pattern_21 0.00677087	Pattern Name Homer Significance motif1.motif 6.67179e-05
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_9 9.246749999999999e-14	Pattern Name Homer Significance motif10.motif 0.0479327
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.022643299999999998	Pattern Name Homer Significance motif13.motif 0.014306600000000001
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_14 1.70582e-12	Pattern Name Homer Significance motif4.motif 5.53726e-05
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00166097	Pattern Name Homer Significance motif5.motif 0.013656299999999998
Myog	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0155791	Pattern Name Homer Significance motif9.motif 0.00294631
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00131549	Pattern Name Homer Significance motif5.motif 0.012649500000000001
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00173624	Pattern Name Homer Significance motif3.motif 0.0135072
Neurod1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0364047	Pattern Name Homer Significance motif9.motif 0.0209137
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00193758	Pattern Name Homer Significance motif3.motif 0.0135072
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0376934 metacluster_1/pattern_15 2.9881599999999998e-06	Pattern Name Homer Significance motif13.motif 0.03387709999999999
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.011795100000000001	Pattern Name Homer Significance motif9.motif 0.0214562
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0008452189999999999	Pattern Name Homer Significance motif5.motif 0.00864137
Nhlh1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00724151	Pattern Name Homer Significance motif9.motif 0.00716744
Ascl2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00244065	Pattern Name Homer Significance motif9.motif 0.000551766
Erg	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00166097	Pattern Name Homer Significance motif5.motif 0.013656299999999998
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00169367	Pattern Name Homer Significance motif13.motif 0.013378
Fev	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00039923800000000006	Pattern Name Homer Significance motif5.motif 0.010196
Tcf4	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0107399	Pattern Name Homer Significance motif9.motif 0.024250599999999997
Ascl1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00194302	Pattern Name Homer Significance motif9.motif 0.00487407
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.056993499999999996	Pattern Name Homer Significance motif5.motif 0.030430000000000002
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00933103	Pattern Name Homer Significance motif5.motif 0.00915945
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_10 3.70042e-07	Pattern Name Homer Significance motif15.motif 2.26494e-08
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_3 0.020664500000000002 metacluster_1/pattern_12 6.12041e-05	Pattern Name Homer Significance motif2.motif 0.031748900000000004
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_6 0.000536218	Pattern Name Homer Significance motif13.motif 0.016451499999999997
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0240583 metacluster_1/pattern_12 0.00846911	Pattern Name Homer Significance motif2.motif 0.031638599999999996
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00159623 metacluster_1/pattern_13 0.0299973 metacluster_1/pattern_20 0.027859699999999998 metacluster_1/pattern_24 0.05390790000000001	Pattern Name Homer Significance motif3.motif 0.0135072
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0572768	Pattern Name Homer Significance motif5.motif 0.0348004
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000105741 metacluster_1/pattern_12 0.0454796	Pattern Name Homer Significance motif2.motif 9.44515e-05
Bhlha15	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000617165	Pattern Name Homer Significance motif9.motif 0.00815796
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00236865	Pattern Name Homer Significance motif5.motif 0.010222799999999999
Snai1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.021516	Pattern Name Homer Significance motif9.motif 0.052487599999999995
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00131549	Pattern Name Homer Significance motif5.motif 0.00915945
Crem	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0082148	Pattern Name Homer Significance motif13.motif 0.000762625
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00186256	Pattern Name Homer Significance motif13.motif 0.0201265
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_9 7.77525e-06	Pattern Name Homer Significance motif10.motif 0.0479327
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00272578	Pattern Name Homer Significance motif9.motif 0.00707352
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00108691	Pattern Name Homer Significance motif3.motif 0.0135072
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_14 2.1566999999999997e-19	Pattern Name Homer Significance motif4.motif 5.50694e-06
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.057395	Pattern Name Homer Significance motif13.motif 0.000436354
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_9 3.83219e-10	Pattern Name Homer Significance motif10.motif 0.0479327
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0129732	Pattern Name Homer Significance motif5.motif 0.012649500000000001
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00037647099999999997	Pattern Name Homer Significance motif3.motif 0.0135072
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0131218 metacluster_1/pattern_12 0.0454796	Pattern Name Homer Significance motif2.motif 0.0121562
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00121375	Pattern Name Homer Significance motif3.motif 0.0340989
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.05831569999999999	Pattern Name Homer Significance motif13.motif 0.0593462
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0401756 metacluster_1/pattern_20 0.0158596 metacluster_1/pattern_24 0.0201545	Pattern Name Homer Significance motif3.motif 0.0431018
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.03539	Pattern Name Homer Significance motif3.motif 0.0597364
Myf6	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00244065	Pattern Name Homer Significance motif9.motif 0.0352736
Myod1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00724151	Pattern Name Homer Significance motif9.motif 0.000668263
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00236865	Pattern Name Homer Significance motif5.motif 0.015676
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000493839	Pattern Name Homer Significance motif5.motif 0.00588976
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00166097	Pattern Name Homer Significance motif5.motif 0.013656299999999998
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0153811	Pattern Name Homer Significance motif5.motif 0.00864137
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00236865	Pattern Name Homer Significance motif5.motif 0.016538099999999997
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000829152	Pattern Name Homer Significance motif5.motif 4.0933099999999996e-05
Nhlh2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00797547	Pattern Name Homer Significance motif9.motif 0.0346041
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.010768600000000001	Pattern Name Homer Significance motif3.motif 0.0235416
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.035819	Pattern Name Homer Significance motif5.motif 0.020497900000000003
Olig2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.03830069999999999	Pattern Name Homer Significance motif9.motif 0.032835199999999995
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0074608	Pattern Name Homer Significance motif5.motif 0.010196
Neurod2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0112142	Pattern Name Homer Significance motif9.motif 0.00922498
Tgif1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0468986	Pattern Name Homer Significance motif9.motif 0.00721965
Neurog2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0191429	Pattern Name Homer Significance motif9.motif 0.0172011
Atoh1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00362525	Pattern Name Homer Significance motif9.motif 0.00507529
Tcf12	Pattern Name Modisco Significance metacluster_1/pattern_5 0.014310900000000001	Pattern Name Homer Significance motif9.motif 0.024250599999999997
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0173079	Pattern Name Homer Significance motif13.motif 0.039206
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0595168 metacluster_1/pattern_1 5.34418e-10 metacluster_1/pattern_19 0.014935499999999999 metacluster_1/pattern_20 0.00545343 metacluster_1/pattern_21 0.000162872 metacluster_1/pattern_24 0.020966099999999998	Pattern Name Homer Significance motif1.motif 0.000565512
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00747276 metacluster_1/pattern_15 0.00010022299999999999	Pattern Name Homer Significance motif13.motif 0.0212521
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_0 5.44721e-07 metacluster_1/pattern_13 0.033981 metacluster_1/pattern_19 0.00599426 metacluster_1/pattern_20 0.000374786 metacluster_1/pattern_21 0.00495358 metacluster_1/pattern_24 0.00233883	Pattern Name Homer Significance motif3.motif 0.0235416

Unique TF-MoDISco TFs: #155

TF Name	Modisco	Homer
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00013277799999999998	Absent
Sox10	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00480942	Absent
Rax	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Gbx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0279938	Absent
Lhx6	Pattern Name Modisco Significance metacluster_1/pattern_18 0.054088300000000006	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000723632 metacluster_1/pattern_20 0.032780300000000005 metacluster_1/pattern_24 0.0201545	Absent
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.057395	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_15 3.29873e-05	Absent
Uncx	Pattern Name Modisco Significance metacluster_1/pattern_18 0.054088300000000006	Absent
Pax4	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0445645	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_23 0.0012937	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_15 0.000438717	Absent
Tfap2b	Pattern Name Modisco Significance metacluster_1/pattern_21 0.054861099999999996	Absent
Pax7	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0279938	Absent
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_0 5.68222e-09 metacluster_1/pattern_13 0.00463744 metacluster_1/pattern_19 5.70658e-05 metacluster_1/pattern_20 7.07799e-07 metacluster_1/pattern_21 2.95746e-05 metacluster_1/pattern_24 1.02708e-05	Absent
Alx3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0333159	Absent
Barx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0452283	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0500509	Absent
Vsx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Arid3b	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0562981	Absent
Sox4	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0159309	Absent
Noto	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0263468	Absent
En2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359099	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_6 0.021621	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_15 6.31788e-05	Absent
Prop1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206	Absent
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000184358	Absent
Nr1d2	Pattern Name Modisco Significance metacluster_1/pattern_15 0.047396100000000004	Absent
Lhx3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0381176	Absent
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_13 0.012613899999999999	Absent
Nanog	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05152090000000001	Absent
Alx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206	Absent
Tead2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0106266	Absent
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00043889999999999993 metacluster_1/pattern_13 0.00530663 metacluster_1/pattern_19 5.70658e-05 metacluster_1/pattern_20 0.0574802 metacluster_1/pattern_21 0.00010679799999999999 metacluster_1/pattern_24 6.979780000000001e-06	Absent
Mbd2	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0480174 metacluster_1/pattern_24 0.013762	Absent
Hoxb4	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0468541	Absent
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_23 0.0178879	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_19 0.053365800000000005	Absent
Lhx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0263468	Absent
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0593288	Absent
Isl1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0588428	Absent
Pou2f3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00248462	Absent
Isx	Pattern Name Modisco Significance metacluster_1/pattern_18 0.030195099999999996	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05702669999999999 metacluster_1/pattern_18 0.042293	Absent
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05702669999999999 metacluster_1/pattern_18 0.030195099999999996	Absent
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_13 3.3880699999999994e-06	Absent
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_13 1.07836e-05	Absent
Pdx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0431018	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00506291	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_15 0.000843268	Absent
Sox1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0592418	Absent
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0179105	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0016158000000000001 metacluster_1/pattern_19 0.05523290000000001 metacluster_1/pattern_20 0.00258107 metacluster_1/pattern_21 0.00847988 metacluster_1/pattern_24 0.0027228	Absent
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00279508	Absent
Vax2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.031157099999999997	Absent
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_0 0.028762400000000004 metacluster_1/pattern_20 0.03991 metacluster_1/pattern_24 0.0272528	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0145734	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0370027	Absent
Lhx4	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206	Absent
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00512537	Absent
Vsx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206	Absent
Lbx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0263468	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_15 7.52086e-06	Absent
Cebpa	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0588428	Absent
Lhx9	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.000438717	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_15 6.267380000000001e-06	Absent
Vax1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0376209	Absent
Rhox6	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Hoxd1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0507828	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0314847	Absent
Nfatc1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.033191000000000005	Absent
Pou3f1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0442177	Absent
Nobox	Pattern Name Modisco Significance metacluster_1/pattern_18 0.052380899999999994	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00510406	Absent
Msx3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.058594799999999995	Absent
Pou3f2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.031157099999999997	Absent
Arx	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0279938	Absent
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00021685099999999997	Absent
Dlx3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.054088300000000006	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_6 0.031028399999999998	Absent
Pax6	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00198554	Absent
Sox9	Pattern Name Modisco Significance metacluster_1/pattern_4 1.89066e-07	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0072503	Absent
Nkx6-1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.049647500000000004	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_6 0.027388799999999998	Absent
Alx4	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359206	Absent
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00510406	Absent
Tead1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.011954799999999998	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0004931	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0445836	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.027388799999999998	Absent
Hoxd3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0359099	Absent
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_23 0.00013277799999999998	Absent
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000114318	Absent
Figla	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0511216	Absent
Sox17	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0007031510000000001	Absent
Hoxa3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0468541	Absent
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_17 3.22375e-11	Absent
Nkx1-1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618	Absent
Phox2a	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0376209	Absent
En1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.046761800000000006	Absent
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00204573	Absent
Prrx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.042293	Absent
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0007031510000000001	Absent
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_9 1.39602e-06	Absent
Hoxa1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.043767	Absent
Msx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.05859580000000001	Absent
Maf	Pattern Name Modisco Significance metacluster_1/pattern_15 0.014966	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_23 0.0359763	Absent
Hoxc5	Pattern Name Modisco Significance metacluster_1/pattern_18 0.031157099999999997	Absent
Sox6	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00756561	Absent
Sox3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000828603	Absent
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0334403 metacluster_1/pattern_13 0.0299973	Absent
Esx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0279938	Absent
Otp	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05702669999999999	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_6 0.031028399999999998 metacluster_1/pattern_15 7.52086e-06	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.014088900000000001 metacluster_1/pattern_13 0.0390907 metacluster_1/pattern_19 0.00238543 metacluster_1/pattern_20 0.019036599999999997 metacluster_1/pattern_21 0.0100489 metacluster_1/pattern_24 0.0201545	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_15 6.267380000000001e-06	Absent
Maff	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00724076	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0398861 metacluster_1/pattern_6 0.057395	Absent
Pou1f1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.049647500000000004	Absent
Hoxa2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0452283	Absent
Gsx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.030195099999999996	Absent
Emx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_2 5.54994e-06	Absent
Rest	Pattern Name Modisco Significance metacluster_1/pattern_25 4.35785e-11	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0235005	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0596442	Absent
Nkx1-2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Msx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.058594799999999995	Absent
Tead4	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000543075	Absent
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_17 4.4713300000000006e-10	Absent
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_12 0.050950300000000004	Absent
Bcl6	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0454796	Absent
Gbx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0536159	Absent
Shox2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618	Absent
Lmx1b	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0440585	Absent
Evx2	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Hoxb3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.043767	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_0 0.010297 metacluster_1/pattern_20 0.046177499999999996 metacluster_1/pattern_24 0.0201545	Absent
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000438853 metacluster_1/pattern_19 0.0113606 metacluster_1/pattern_20 0.000429785 metacluster_1/pattern_21 0.00495358 metacluster_1/pattern_24 0.0075872	Absent
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_23 0.000154842	Absent
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0010967000000000001	Absent
Prrx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent
Evx1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0309618	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_0 0.057256100000000004 metacluster_1/pattern_10 0.059614999999999994 metacluster_1/pattern_13 0.012613899999999999 metacluster_1/pattern_19 0.0163635 metacluster_1/pattern_20 0.00430563 metacluster_1/pattern_21 0.00790427 metacluster_1/pattern_24 0.0201545	Absent
Irf5	Pattern Name Modisco Significance metacluster_1/pattern_23 0.0292971	Absent
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000488543 metacluster_1/pattern_20 0.0114819 metacluster_1/pattern_21 0.0483037 metacluster_1/pattern_24 0.024789099999999998	Absent
Lhx8	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0358204	Absent
Phox2b	Pattern Name Modisco Significance metacluster_1/pattern_18 0.022274799999999997	Absent

Unique Homer TFs: #7

TF Name	Modisco	Homer
Prdm9	Absent	Pattern Name Homer Significance motif9.motif 0.0390789
Meis2	Absent	Pattern Name Homer Significance motif9.motif 0.00922498
Zbtb33	Absent	Pattern Name Homer Significance motif16.motif 0.0063034
E2f7	Absent	Pattern Name Homer Significance motif3.motif 0.0585875
E2f6	Absent	Pattern Name Homer Significance motif3.motif 0.0431018
Meis3	Absent	Pattern Name Homer Significance motif9.motif 0.0446055
Pknox2	Absent	Pattern Name Homer Significance motif9.motif 0.050468