In [1]:
# Parameters
data_name = "wES.CRNL_NRL_CRST;E10.5;A;GEO"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_169-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_169-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"
In [2]:
from matlas.reports import display_metadata
load data from labcluster
Using TensorFlow backend.
2019-08-30 19:18:50,048 [WARNING] git-lfs not installed
In [3]:
display_metadata(data_name, perf_file, reportfile, sheetname)
    Sample Information
    MetaData NameDescription
    Cell typeCranial neural crest cells (E10.5,WT)
    Cell GroupES cells and embryonic tissues
    Experiment NameATAC
    Experiment GroupGEO
    Pipeline Output
    replicateNaïve overlap peaksIDR peaksTSS enrichment (< 8 is very poor <10 is low)Final number of unique mapping, dup-filtered, chrM filtered readsNumber of reads in called peak regionsFraction of reads in called peak regionsNumber of reads in promoter regionsFraction of reads in promoter regionsNumber of reads in enhancer regionsFraction of reads in enhancer regions
    rep11603671057375.05711991720578191630.065287320270.0728414152880.3454
    rep21603671057376.601310079378897951520.097278581000.078355678450.3529
    Modelling Metadata
    MetricValue
    auPRC0.6777
    Calibrated Recall at 50% FDR0.178
    Number of Positive Examples in Test Data82186
    Number of Negative Examples in Test Data7988665
    Imbalance Ratio in Test Data0.0102
    Test Chromosomeschr2, chr3, chr19
In [4]:
from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns
In [5]:
display_denovo_patterns(data_name, modisco_root=modisco_root)
TF-MoDISco is using the TensorFlow backend.
The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco
Click here for Denovo Patterns by TF-MoDISco: #21
Pattern NameTF Name(s)Modisco
metacluster_0/pattern_0 # seqlets: 3516 SequenceContrib ScoresHyp_Contrib Scores
Sp1, Sp5, Sp3, Sp4, Sp2, Klf3, Wt1, Maz, Zbtb17, Klf15,

Zfp281, Egr1, Klf5, Rela, Klf1, Klf6, Klf4, E2f4, Klf7, Klf8, Klf12,

Egr2, Zfx, E2f1, E2f7, Bcl6, Ptf1a, Ctcfl, Fli1, Sall4, Mxi1
metacluster_0/pattern_1 # seqlets: 3008 SequenceContrib ScoresHyp_Contrib Scores
Usf2
metacluster_0/pattern_2 # seqlets: 2090 SequenceContrib ScoresHyp_Contrib Scores
Ctcf
metacluster_0/pattern_3 # seqlets: 1230 SequenceContrib ScoresHyp_Contrib Scores
Gabpa, Elf1, Elk1, Elk4, Erg, Ets1, Elk3, Fev, Elf5, Etv5,

Etv4, Ehf, Etv1, Elf2, Elf4, Etv6, XP_911724.4, Etv3, Etv2, Elf3, Spi1,

Spdef, Stat3, Stat6
metacluster_0/pattern_4 # seqlets: 1076 SequenceContrib ScoresHyp_Contrib Scores
Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_0/pattern_5 # seqlets: 910 SequenceContrib ScoresHyp_Contrib Scores
Twist1, Bhlha15, Tcf21, Neurog1, Msc, Olig2, Lhx1, Bhlhe22, Tcf12, Atoh1,

Lhx5, Tcf4, Lhx3, Tfap4, Tcf3, Snai1, Neurod1, Twist2
metacluster_0/pattern_6 # seqlets: 866 SequenceContrib ScoresHyp_Contrib Scores
Nrf1, Zic3
metacluster_0/pattern_7 # seqlets: 771 SequenceContrib ScoresHyp_Contrib Scores
Dlx5, Dlx2, Dlx4, Mnx1, Nobox, Hoxc6, Dlx1, En1, Msx3, Dbx2,

Msx2, Hoxd3, Dlx3, Pdx1, Barx2, Hoxb6, Meox2, Lhx8, Hoxb7
metacluster_0/pattern_8 # seqlets: 555 SequenceContrib ScoresHyp_Contrib Scores
Taf1, Yy1, Rfx1, Zfp42
metacluster_0/pattern_9 # seqlets: 475 SequenceContrib ScoresHyp_Contrib Scores
Creb1, Atf7, Atf2, Jdp2, Atf1, Creb5, Crem, Atf3, Mafb, Fosl2,

Nfil3, Usf1, Hlf, Fosl1, Creb3l2, Dbp, Tef, Jun, Srebf1, Tfe3, Rxrb
metacluster_0/pattern_10 # seqlets: 455 SequenceContrib ScoresHyp_Contrib Scores
Rfx3, Rfx2, Rfx4, Rfx7, Rfx6, Sox2, Pou5f1
metacluster_0/pattern_11 # seqlets: 446 SequenceContrib ScoresHyp_Contrib Scores
Six2, Six1, Six4
metacluster_0/pattern_12 # seqlets: 326 SequenceContrib ScoresHyp_Contrib Scores
Thap11, Zfp143, Tbx2
metacluster_0/pattern_13 # seqlets: 309 SequenceContrib ScoresHyp_Contrib Scores
Tead2, Tead4, Tead1
metacluster_0/pattern_14 # seqlets: 294 SequenceContrib ScoresHyp_Contrib Scores
Tfeb, Tfec, Arntl, Mitf, Bhlhe40, Clock, Mlx, Arnt, Srebf2, Npas2,

Tcfl5, Myc, Bhlhe41, Max, Mycn, Rxrg, Mlxip
metacluster_0/pattern_15 # seqlets: 112 SequenceContrib ScoresHyp_Contrib Scores
Sox9, Sox4, Sox3, Sox6, Msgn1, Sox17, Sox10
metacluster_0/pattern_16 # seqlets: 74 SequenceContrib ScoresHyp_Contrib Scores
Pou2f2, Pou2f1, Foxb1, Nanog, Foxc1, Foxg1
metacluster_0/pattern_17 # seqlets: 85 SequenceContrib ScoresHyp_Contrib Scores
Rest
metacluster_0/pattern_18 # seqlets: 53 SequenceContrib ScoresHyp_Contrib Scores
Tcf7l2, Lef1, Tcf7l1, Tcf7, Nr2f6
metacluster_0/pattern_19 # seqlets: 47 SequenceContrib ScoresHyp_Contrib Scores
Foxq1, Foxl1, Foxc2, Foxj2, Gm5294, Foxj3, Foxo3, Foxp2, Foxl2, Foxa1,

Foxd3, Foxk1, Sox5, Foxp1, Foxa2, Foxo1, Foxo4, Foxm1, Sox13
metacluster_0/pattern_20 # seqlets: 40 SequenceContrib ScoresHyp_Contrib Scores
Srf
Click here for Motifs by TF-MoDISco: #198
TF NamePattern(s)
Sp1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0003955
metacluster_0/pattern_10.041058199999999996
metacluster_0/pattern_60.013505700000000002
metacluster_0/pattern_80.00025462099999999996
metacluster_0/pattern_140.00120818
Sp5
Pattern NameModiscoSignificance
metacluster_0/pattern_02.27912e-10
metacluster_0/pattern_80.054406399999999994
Sp3
Pattern NameModiscoSignificance
metacluster_0/pattern_01.90297e-08
metacluster_0/pattern_10.00229524
metacluster_0/pattern_60.00242732
metacluster_0/pattern_80.00154964
metacluster_0/pattern_140.000868669
Sp4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00229172
metacluster_0/pattern_80.032056299999999996
metacluster_0/pattern_140.046751999999999995
Sp2
Pattern NameModiscoSignificance
metacluster_0/pattern_02.11795e-08
metacluster_0/pattern_10.00125608
metacluster_0/pattern_60.000255703
metacluster_0/pattern_85.53892e-05
metacluster_0/pattern_140.000763198
Klf3
Pattern NameModiscoSignificance
metacluster_0/pattern_03.65466e-08
metacluster_0/pattern_10.00850898
metacluster_0/pattern_60.0536082
metacluster_0/pattern_80.028607499999999998
metacluster_0/pattern_140.00416633
Wt1
Pattern NameModiscoSignificance
metacluster_0/pattern_07.239139999999998e-08
metacluster_0/pattern_80.0219526
metacluster_0/pattern_140.023653099999999996
Maz
Pattern NameModiscoSignificance
metacluster_0/pattern_01.7096699999999997e-07
metacluster_0/pattern_80.028607499999999998
Zbtb17
Pattern NameModiscoSignificance
metacluster_0/pattern_08.96635e-07
metacluster_0/pattern_80.00644372
Klf15
Pattern NameModiscoSignificance
metacluster_0/pattern_01.26127e-05
Zfp281
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00014330000000000001
Egr1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00902693
metacluster_0/pattern_80.0579251
Klf5
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00021214099999999997
Rela
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00021945099999999998
Klf1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.000302062
Klf6
Pattern NameModiscoSignificance
metacluster_0/pattern_00.000324336
metacluster_0/pattern_140.017055200000000003
Klf4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00393613
E2f4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0011178
Klf7
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00219335
Klf8
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0049832
Klf12
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00556615
Egr2
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00868585
metacluster_0/pattern_80.0412231
Zfx
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0245726
metacluster_0/pattern_10.0262501
metacluster_0/pattern_60.0536082
metacluster_0/pattern_80.0579251
metacluster_0/pattern_140.021831200000000002
E2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.016890400000000003
E2f7
Pattern NameModiscoSignificance
metacluster_0/pattern_00.016981599999999996
Bcl6
Pattern NameModiscoSignificance
metacluster_0/pattern_00.023469
Ptf1a
Pattern NameModiscoSignificance
metacluster_0/pattern_00.025894900000000002
Ctcfl
Pattern NameModiscoSignificance
metacluster_0/pattern_00.036997800000000004
metacluster_0/pattern_10.046025
metacluster_0/pattern_22.2027899999999998e-07
metacluster_0/pattern_140.0578721
Fli1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.044610699999999996
metacluster_0/pattern_30.0033418
Sall4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0507014
Mxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0564808
metacluster_0/pattern_10.00125608
metacluster_0/pattern_80.013354699999999999
metacluster_0/pattern_140.00292495
Usf2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00957489
metacluster_0/pattern_60.0442787
metacluster_0/pattern_80.017925200000000002
metacluster_0/pattern_90.0459765
metacluster_0/pattern_140.00821723
Ctcf
Pattern NameModiscoSignificance
metacluster_0/pattern_23.57086e-11
Gabpa
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Elf1
Pattern NameModiscoSignificance
metacluster_0/pattern_32.2961099999999998e-06
Elk1
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Elk4
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00347016
Erg
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0033418
Ets1
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00390221
Elk3
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Fev
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00140303
Elf5
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00685089
Etv5
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0022871
Etv4
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Ehf
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00413598
Etv1
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Elf2
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00437176
Elf4
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Etv6
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0561711
XP_911724.4
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00394633
Etv3
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00434085
Etv2
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00555107
Elf3
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0148386
Spi1
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0148386
Spdef
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0232317
Stat3
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0545529
Stat6
Pattern NameModiscoSignificance
metacluster_0/pattern_30.05659159999999999
Nfyb
Pattern NameModiscoSignificance
metacluster_0/pattern_43.0181e-15
Nfyc
Pattern NameModiscoSignificance
metacluster_0/pattern_46.96302e-13
Nfya
Pattern NameModiscoSignificance
metacluster_0/pattern_41.09486e-12
Foxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_46.33597e-07
Pbx3
Pattern NameModiscoSignificance
metacluster_0/pattern_42.6741100000000002e-06
Twist1
Pattern NameModiscoSignificance
metacluster_0/pattern_54.7348e-14
metacluster_0/pattern_70.0228078
Bhlha15
Pattern NameModiscoSignificance
metacluster_0/pattern_50.017681
Tcf21
Pattern NameModiscoSignificance
metacluster_0/pattern_50.017681
Neurog1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.017681
Msc
Pattern NameModiscoSignificance
metacluster_0/pattern_50.017681
Olig2
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0208639
Lhx1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0437476
metacluster_0/pattern_70.0486906
Bhlhe22
Pattern NameModiscoSignificance
metacluster_0/pattern_50.044955300000000004
Tcf12
Pattern NameModiscoSignificance
metacluster_0/pattern_50.05230599999999999
Atoh1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0541784
Lhx5
Pattern NameModiscoSignificance
metacluster_0/pattern_50.05230599999999999
metacluster_0/pattern_70.050416300000000004
Tcf4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.05230599999999999
Lhx3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0541784
metacluster_0/pattern_70.0525716
Tfap4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0541784
Tcf3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0553877
metacluster_0/pattern_180.00119813
Snai1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0553877
Neurod1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0553877
Twist2
Pattern NameModiscoSignificance
metacluster_0/pattern_50.058249300000000004
Nrf1
Pattern NameModiscoSignificance
metacluster_0/pattern_61.99638e-05
Zic3
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0536082
metacluster_0/pattern_140.059499300000000005
Dlx5
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00590042
Dlx2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Dlx4
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0407286
Mnx1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0407286
Nobox
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Hoxc6
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Dlx1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
En1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Msx3
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Dbx2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Msx2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Hoxd3
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0515254
Dlx3
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0515254
Pdx1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0515254
Barx2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Hoxb6
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Meox2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Lhx8
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Hoxb7
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052956600000000006
Taf1
Pattern NameModiscoSignificance
metacluster_0/pattern_86.00078e-06
Yy1
Pattern NameModiscoSignificance
metacluster_0/pattern_85.53892e-05
Rfx1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0034604999999999996
metacluster_0/pattern_105.2408800000000005e-08
Zfp42
Pattern NameModiscoSignificance
metacluster_0/pattern_80.013354699999999999
Creb1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00181083
metacluster_0/pattern_140.053819000000000006
Atf7
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00018969900000000001
metacluster_0/pattern_140.021878400000000003
Atf2
Pattern NameModiscoSignificance
metacluster_0/pattern_90.000643611
metacluster_0/pattern_140.031904300000000003
Jdp2
Pattern NameModiscoSignificance
metacluster_0/pattern_90.000445499
metacluster_0/pattern_140.040087199999999996
Atf1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0292742
metacluster_0/pattern_140.023810400000000002
Creb5
Pattern NameModiscoSignificance
metacluster_0/pattern_90.000206193
Crem
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00584337
Atf3
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00913764
Mafb
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00384068
Fosl2
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00798103
Nfil3
Pattern NameModiscoSignificance
metacluster_0/pattern_90.018352
Usf1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0202322
metacluster_0/pattern_140.021831200000000002
Hlf
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0202761
metacluster_0/pattern_140.045943
Fosl1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0212391
Creb3l2
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0226592
metacluster_0/pattern_140.023653099999999996
Dbp
Pattern NameModiscoSignificance
metacluster_0/pattern_90.024579499999999997
Tef
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0284844
Jun
Pattern NameModiscoSignificance
metacluster_0/pattern_90.028974299999999998
Srebf1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0317371
metacluster_0/pattern_140.0367991
Tfe3
Pattern NameModiscoSignificance
metacluster_0/pattern_90.037412
metacluster_0/pattern_140.00159833
Rxrb
Pattern NameModiscoSignificance
metacluster_0/pattern_90.037412
metacluster_0/pattern_140.040087199999999996
Rfx3
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000835745
Rfx2
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0107077
Rfx4
Pattern NameModiscoSignificance
metacluster_0/pattern_104.19576e-05
Rfx7
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000565535
Rfx6
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0005684080000000001
Sox2
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0360675
metacluster_0/pattern_150.00519488
metacluster_0/pattern_160.0442512
Pou5f1
Pattern NameModiscoSignificance
metacluster_0/pattern_100.045536099999999996
metacluster_0/pattern_160.033445300000000004
metacluster_0/pattern_180.0582946
Six2
Pattern NameModiscoSignificance
metacluster_0/pattern_112.1443e-12
Six1
Pattern NameModiscoSignificance
metacluster_0/pattern_114.34844e-09
Six4
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00011470799999999999
Thap11
Pattern NameModiscoSignificance
metacluster_0/pattern_121.56408e-20
Zfp143
Pattern NameModiscoSignificance
metacluster_0/pattern_121.35427e-19
Tbx2
Pattern NameModiscoSignificance
metacluster_0/pattern_121.2707899999999999e-12
Tead2
Pattern NameModiscoSignificance
metacluster_0/pattern_136.54481e-06
Tead4
Pattern NameModiscoSignificance
metacluster_0/pattern_130.000100281
Tead1
Pattern NameModiscoSignificance
metacluster_0/pattern_132.9963800000000003e-05
Tfeb
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00043615900000000004
Tfec
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00175932
Arntl
Pattern NameModiscoSignificance
metacluster_0/pattern_140.013911600000000001
Mitf
Pattern NameModiscoSignificance
metacluster_0/pattern_140.000823943
Bhlhe40
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00856754
Clock
Pattern NameModiscoSignificance
metacluster_0/pattern_140.000699183
Mlx
Pattern NameModiscoSignificance
metacluster_0/pattern_140.011389100000000001
Arnt
Pattern NameModiscoSignificance
metacluster_0/pattern_140.040087199999999996
Srebf2
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00265371
Npas2
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00686386
Tcfl5
Pattern NameModiscoSignificance
metacluster_0/pattern_140.013911600000000001
Myc
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0367991
Bhlhe41
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0179542
Max
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0214319
Mycn
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0214319
Rxrg
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0272661
Mlxip
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0548567
Sox9
Pattern NameModiscoSignificance
metacluster_0/pattern_153.3976e-05
Sox4
Pattern NameModiscoSignificance
metacluster_0/pattern_150.00531263
metacluster_0/pattern_180.024550799999999998
Sox3
Pattern NameModiscoSignificance
metacluster_0/pattern_150.00682042
metacluster_0/pattern_190.0429655
Sox6
Pattern NameModiscoSignificance
metacluster_0/pattern_150.0375099
Msgn1
Pattern NameModiscoSignificance
metacluster_0/pattern_150.0437854
Sox17
Pattern NameModiscoSignificance
metacluster_0/pattern_150.0500937
Sox10
Pattern NameModiscoSignificance
metacluster_0/pattern_150.0500937
Pou2f2
Pattern NameModiscoSignificance
metacluster_0/pattern_160.033445300000000004
Pou2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_160.00695436
Foxb1
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0146959
metacluster_0/pattern_190.0159608
Nanog
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0210487
metacluster_0/pattern_180.0234615
Foxc1
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0470043
metacluster_0/pattern_190.0198999
Foxg1
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0471675
metacluster_0/pattern_190.0475766
Rest
Pattern NameModiscoSignificance
metacluster_0/pattern_171.6577799999999998e-12
Tcf7l2
Pattern NameModiscoSignificance
metacluster_0/pattern_180.00128766
Lef1
Pattern NameModiscoSignificance
metacluster_0/pattern_180.024550799999999998
Tcf7l1
Pattern NameModiscoSignificance
metacluster_0/pattern_180.00284761
Tcf7
Pattern NameModiscoSignificance
metacluster_0/pattern_180.020005099999999998
Nr2f6
Pattern NameModiscoSignificance
metacluster_0/pattern_180.0549306
Foxq1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00439099
Foxl1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.007459100000000001
Foxc2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.007459100000000001
Foxj2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0144237
Gm5294
Pattern NameModiscoSignificance
metacluster_0/pattern_190.007459100000000001
Foxj3
Pattern NameModiscoSignificance
metacluster_0/pattern_190.015330700000000001
Foxo3
Pattern NameModiscoSignificance
metacluster_0/pattern_190.012851300000000001
Foxp2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.019965200000000002
Foxl2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0139483
Foxa1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0139483
Foxd3
Pattern NameModiscoSignificance
metacluster_0/pattern_190.014471000000000001
Foxk1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.030567900000000002
Sox5
Pattern NameModiscoSignificance
metacluster_0/pattern_190.015237200000000001
Foxp1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0159608
Foxa2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.019377099999999998
Foxo1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.022799299999999998
Foxo4
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0442676
Foxm1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0450211
Sox13
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0575631
Srf
Pattern NameModiscoSignificance
metacluster_0/pattern_200.014011299999999999
In [6]:
display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)
Number of CISBP TFs obtained by TF-MoDISco and Homer
Shared TFs between TF-MoDISco and Homer: #83
TF NameModiscoHomer
Egr1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00902693
metacluster_0/pattern_80.0579251
Pattern NameHomerSignificance
motif2.motif0.00530594
Hoxc6
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Pattern NameHomerSignificance
motif3.motif0.0343166
Wt1
Pattern NameModiscoSignificance
metacluster_0/pattern_07.239139999999998e-08
metacluster_0/pattern_80.0219526
metacluster_0/pattern_140.023653099999999996
Pattern NameHomerSignificance
motif2.motif0.0577692
Pbx3
Pattern NameModiscoSignificance
metacluster_0/pattern_42.6741100000000002e-06
Pattern NameHomerSignificance
motif6.motif0.000454806
Ctcfl
Pattern NameModiscoSignificance
metacluster_0/pattern_00.036997800000000004
metacluster_0/pattern_10.046025
metacluster_0/pattern_22.2027899999999998e-07
metacluster_0/pattern_140.0578721
Pattern NameHomerSignificance
motif1.motif0.0008025189999999999
Creb5
Pattern NameModiscoSignificance
metacluster_0/pattern_90.000206193
Pattern NameHomerSignificance
motif9.motif0.0220723
Twist1
Pattern NameModiscoSignificance
metacluster_0/pattern_54.7348e-14
metacluster_0/pattern_70.0228078
Pattern NameHomerSignificance
motif3.motif0.00553084
motif13.motif0.0356778
Klf7
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00219335
Pattern NameHomerSignificance
motif2.motif0.00222892
En1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Pattern NameHomerSignificance
motif3.motif0.00280293
Barx2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Pattern NameHomerSignificance
motif3.motif0.0263833
Klf3
Pattern NameModiscoSignificance
metacluster_0/pattern_03.65466e-08
metacluster_0/pattern_10.00850898
metacluster_0/pattern_60.0536082
metacluster_0/pattern_80.028607499999999998
metacluster_0/pattern_140.00416633
Pattern NameHomerSignificance
motif2.motif0.00222892
Sp5
Pattern NameModiscoSignificance
metacluster_0/pattern_02.27912e-10
metacluster_0/pattern_80.054406399999999994
Pattern NameHomerSignificance
motif2.motif0.0244166
Lhx8
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Pattern NameHomerSignificance
motif3.motif0.0333117
Nobox
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Pattern NameHomerSignificance
motif3.motif0.0493859
Hoxb6
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Pattern NameHomerSignificance
motif3.motif0.016062299999999998
Klf12
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00556615
Pattern NameHomerSignificance
motif2.motif0.0273606
Mnx1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0407286
Pattern NameHomerSignificance
motif3.motif0.00637937
Lhx1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0437476
metacluster_0/pattern_70.0486906
Pattern NameHomerSignificance
motif3.motif0.00637937
Zfp143
Pattern NameModiscoSignificance
metacluster_0/pattern_121.35427e-19
Pattern NameHomerSignificance
motif4.motif8.285589999999999e-08
Elf5
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00685089
Pattern NameHomerSignificance
motif7.motif0.020303599999999998
Etv1
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Pattern NameHomerSignificance
motif7.motif0.04767419999999999
Ctcf
Pattern NameModiscoSignificance
metacluster_0/pattern_23.57086e-11
Pattern NameHomerSignificance
motif1.motif0.000439337
Elf4
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Pattern NameHomerSignificance
motif7.motif0.04767419999999999
Ets1
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00390221
Pattern NameHomerSignificance
motif7.motif0.0254871
Etv4
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Pattern NameHomerSignificance
motif7.motif0.0393912
Hoxb7
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052956600000000006
Pattern NameHomerSignificance
motif3.motif0.0360655
Dlx1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Pattern NameHomerSignificance
motif3.motif0.0240568
Klf6
Pattern NameModiscoSignificance
metacluster_0/pattern_00.000324336
metacluster_0/pattern_140.017055200000000003
Pattern NameHomerSignificance
motif2.motif0.00969736
Msx2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Pattern NameHomerSignificance
motif3.motif0.00365828
Klf1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.000302062
Pattern NameHomerSignificance
motif2.motif0.0109953
Spi1
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0148386
Pattern NameHomerSignificance
motif7.motif0.0393912
Tbx2
Pattern NameModiscoSignificance
metacluster_0/pattern_121.2707899999999999e-12
Pattern NameHomerSignificance
motif4.motif1.47277e-05
Sp4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00229172
metacluster_0/pattern_80.032056299999999996
metacluster_0/pattern_140.046751999999999995
Pattern NameHomerSignificance
motif2.motif0.00969736
Sp2
Pattern NameModiscoSignificance
metacluster_0/pattern_02.11795e-08
metacluster_0/pattern_10.00125608
metacluster_0/pattern_60.000255703
metacluster_0/pattern_85.53892e-05
metacluster_0/pattern_140.000763198
Pattern NameHomerSignificance
motif2.motif0.00222892
Thap11
Pattern NameModiscoSignificance
metacluster_0/pattern_121.56408e-20
Pattern NameHomerSignificance
motif4.motif9.58734e-09
Gabpa
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Pattern NameHomerSignificance
motif7.motif0.0393912
Creb1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00181083
metacluster_0/pattern_140.053819000000000006
Pattern NameHomerSignificance
motif9.motif0.0220723
Pdx1
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0515254
Pattern NameHomerSignificance
motif3.motif0.0163811
Zbtb17
Pattern NameModiscoSignificance
metacluster_0/pattern_08.96635e-07
metacluster_0/pattern_80.00644372
Pattern NameHomerSignificance
motif2.motif0.0244166
Bhlha15
Pattern NameModiscoSignificance
metacluster_0/pattern_50.017681
Pattern NameHomerSignificance
motif13.motif0.0405639
Elk4
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00347016
Pattern NameHomerSignificance
motif7.motif0.057080700000000005
Elf2
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00437176
Pattern NameHomerSignificance
motif7.motif0.0393912
Etv6
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0561711
Pattern NameHomerSignificance
motif7.motif0.04767419999999999
Atf7
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00018969900000000001
metacluster_0/pattern_140.021878400000000003
Pattern NameHomerSignificance
motif9.motif0.0425883
Sp3
Pattern NameModiscoSignificance
metacluster_0/pattern_01.90297e-08
metacluster_0/pattern_10.00229524
metacluster_0/pattern_60.00242732
metacluster_0/pattern_80.00154964
metacluster_0/pattern_140.000868669
Pattern NameHomerSignificance
motif2.motif0.00222892
Nanog
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0210487
metacluster_0/pattern_180.0234615
Pattern NameHomerSignificance
motif3.motif0.030264199999999998
E2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.016890400000000003
Pattern NameHomerSignificance
motif2.motif0.00530594
Jdp2
Pattern NameModiscoSignificance
metacluster_0/pattern_90.000445499
metacluster_0/pattern_140.040087199999999996
Pattern NameHomerSignificance
motif9.motif0.058431899999999995
Ehf
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00413598
Pattern NameHomerSignificance
motif7.motif0.0551494
Atf1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0292742
metacluster_0/pattern_140.023810400000000002
Pattern NameHomerSignificance
motif9.motif0.0050739
Sp1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0003955
metacluster_0/pattern_10.041058199999999996
metacluster_0/pattern_60.013505700000000002
metacluster_0/pattern_80.00025462099999999996
metacluster_0/pattern_140.00120818
Pattern NameHomerSignificance
motif2.motif0.00530594
Meox2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Pattern NameHomerSignificance
motif3.motif0.0271505
Dlx2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Pattern NameHomerSignificance
motif3.motif0.0195304
Nfya
Pattern NameModiscoSignificance
metacluster_0/pattern_41.09486e-12
Pattern NameHomerSignificance
motif6.motif6.361930000000001e-05
Dbx2
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0486906
Pattern NameHomerSignificance
motif3.motif0.0109044
Klf5
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00021214099999999997
Pattern NameHomerSignificance
motif2.motif0.007485899999999999
Erg
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0033418
Pattern NameHomerSignificance
motif7.motif0.0254871
E2f4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0011178
Pattern NameHomerSignificance
motif2.motif0.00222892
Klf15
Pattern NameModiscoSignificance
metacluster_0/pattern_01.26127e-05
Pattern NameHomerSignificance
motif2.motif0.045867000000000005
Rxrb
Pattern NameModiscoSignificance
metacluster_0/pattern_90.037412
metacluster_0/pattern_140.040087199999999996
Pattern NameHomerSignificance
motif9.motif0.0220723
Atf2
Pattern NameModiscoSignificance
metacluster_0/pattern_90.000643611
metacluster_0/pattern_140.031904300000000003
Pattern NameHomerSignificance
motif9.motif0.0442419
Lhx5
Pattern NameModiscoSignificance
metacluster_0/pattern_50.05230599999999999
metacluster_0/pattern_70.050416300000000004
Pattern NameHomerSignificance
motif3.motif0.0104428
Fli1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.044610699999999996
metacluster_0/pattern_30.0033418
Pattern NameHomerSignificance
motif7.motif0.020303599999999998
Crem
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00584337
Pattern NameHomerSignificance
motif9.motif0.0220723
Elk1
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Pattern NameHomerSignificance
motif7.motif0.0393912
Usf2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00957489
metacluster_0/pattern_60.0442787
metacluster_0/pattern_80.017925200000000002
metacluster_0/pattern_90.0459765
metacluster_0/pattern_140.00821723
Pattern NameHomerSignificance
motif19.motif0.0313118
Dlx3
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0515254
Pattern NameHomerSignificance
motif3.motif0.0263833
Klf8
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0049832
Pattern NameHomerSignificance
motif2.motif0.00222892
Fev
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00140303
Pattern NameHomerSignificance
motif7.motif0.0393912
Klf4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00393613
Pattern NameHomerSignificance
motif2.motif0.00811896
Hoxd3
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0515254
Pattern NameHomerSignificance
motif3.motif0.047455000000000004
Dlx4
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0407286
Pattern NameHomerSignificance
motif3.motif0.00637937
Nfyb
Pattern NameModiscoSignificance
metacluster_0/pattern_43.0181e-15
Pattern NameHomerSignificance
motif6.motif5.36178e-06
E2f7
Pattern NameModiscoSignificance
metacluster_0/pattern_00.016981599999999996
Pattern NameHomerSignificance
motif2.motif0.00811896
Msx3
Pattern NameModiscoSignificance
metacluster_0/pattern_70.052355200000000005
Pattern NameHomerSignificance
motif3.motif0.00637937
Foxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_46.33597e-07
Pattern NameHomerSignificance
motif6.motif6.318880000000001e-05
Lhx3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0541784
metacluster_0/pattern_70.0525716
Pattern NameHomerSignificance
motif3.motif0.017390400000000004
Nfyc
Pattern NameModiscoSignificance
metacluster_0/pattern_46.96302e-13
Pattern NameHomerSignificance
motif6.motif6.318880000000001e-05
Nrf1
Pattern NameModiscoSignificance
metacluster_0/pattern_61.99638e-05
Pattern NameHomerSignificance
motif8.motif6.6556e-05
Dlx5
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00590042
Pattern NameHomerSignificance
motif3.motif8.79108e-05
Etv5
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0022871
Pattern NameHomerSignificance
motif7.motif0.0393912
Elf1
Pattern NameModiscoSignificance
metacluster_0/pattern_32.2961099999999998e-06
Pattern NameHomerSignificance
motif7.motif0.00306672
Elk3
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00303633
Pattern NameHomerSignificance
motif7.motif0.0393912
Unique TF-MoDISco TFs: #115
TF NameModiscoHomer
Fosl2
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00798103
Absent
Msc
Pattern NameModiscoSignificance
metacluster_0/pattern_50.017681
Absent
Zfp281
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00014330000000000001
Absent
Myc
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0367991
Absent
Pou2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_160.00695436
Absent
Sox13
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0575631
Absent
Usf1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0202322
metacluster_0/pattern_140.021831200000000002
Absent
Six1
Pattern NameModiscoSignificance
metacluster_0/pattern_114.34844e-09
Absent
Bhlhe41
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0179542
Absent
Arntl
Pattern NameModiscoSignificance
metacluster_0/pattern_140.013911600000000001
Absent
Mafb
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00384068
Absent
Taf1
Pattern NameModiscoSignificance
metacluster_0/pattern_86.00078e-06
Absent
Foxc1
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0470043
metacluster_0/pattern_190.0198999
Absent
Sox10
Pattern NameModiscoSignificance
metacluster_0/pattern_150.0500937
Absent
Foxm1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0450211
Absent
Tcf4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.05230599999999999
Absent
Foxo4
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0442676
Absent
Sox6
Pattern NameModiscoSignificance
metacluster_0/pattern_150.0375099
Absent
Pou5f1
Pattern NameModiscoSignificance
metacluster_0/pattern_100.045536099999999996
metacluster_0/pattern_160.033445300000000004
metacluster_0/pattern_180.0582946
Absent
Zfp42
Pattern NameModiscoSignificance
metacluster_0/pattern_80.013354699999999999
Absent
Clock
Pattern NameModiscoSignificance
metacluster_0/pattern_140.000699183
Absent
Srf
Pattern NameModiscoSignificance
metacluster_0/pattern_200.014011299999999999
Absent
Lef1
Pattern NameModiscoSignificance
metacluster_0/pattern_180.024550799999999998
Absent
Tfap4
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0541784
Absent
Foxl1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.007459100000000001
Absent
Jun
Pattern NameModiscoSignificance
metacluster_0/pattern_90.028974299999999998
Absent
Foxj3
Pattern NameModiscoSignificance
metacluster_0/pattern_190.015330700000000001
Absent
Olig2
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0208639
Absent
Rxrg
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0272661
Absent
Arnt
Pattern NameModiscoSignificance
metacluster_0/pattern_140.040087199999999996
Absent
Foxk1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.030567900000000002
Absent
Sall4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0507014
Absent
Twist2
Pattern NameModiscoSignificance
metacluster_0/pattern_50.058249300000000004
Absent
Foxp1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0159608
Absent
Bcl6
Pattern NameModiscoSignificance
metacluster_0/pattern_00.023469
Absent
Rfx3
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000835745
Absent
Mitf
Pattern NameModiscoSignificance
metacluster_0/pattern_140.000823943
Absent
Rfx7
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000565535
Absent
Neurod1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0553877
Absent
Sox4
Pattern NameModiscoSignificance
metacluster_0/pattern_150.00531263
metacluster_0/pattern_180.024550799999999998
Absent
Etv3
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00434085
Absent
Srebf2
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00265371
Absent
Foxj2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0144237
Absent
Mycn
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0214319
Absent
Sox2
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0360675
metacluster_0/pattern_150.00519488
metacluster_0/pattern_160.0442512
Absent
Nr2f6
Pattern NameModiscoSignificance
metacluster_0/pattern_180.0549306
Absent
Tcf7l2
Pattern NameModiscoSignificance
metacluster_0/pattern_180.00128766
Absent
Spdef
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0232317
Absent
Sox5
Pattern NameModiscoSignificance
metacluster_0/pattern_190.015237200000000001
Absent
Rfx1
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0034604999999999996
metacluster_0/pattern_105.2408800000000005e-08
Absent
Foxg1
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0471675
metacluster_0/pattern_190.0475766
Absent
Tef
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0284844
Absent
XP_911724.4
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00394633
Absent
Foxc2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.007459100000000001
Absent
Creb3l2
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0226592
metacluster_0/pattern_140.023653099999999996
Absent
Foxo1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.022799299999999998
Absent
Fosl1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0212391
Absent
Foxa2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.019377099999999998
Absent
Tead4
Pattern NameModiscoSignificance
metacluster_0/pattern_130.000100281
Absent
Tead1
Pattern NameModiscoSignificance
metacluster_0/pattern_132.9963800000000003e-05
Absent
Dbp
Pattern NameModiscoSignificance
metacluster_0/pattern_90.024579499999999997
Absent
Tcf21
Pattern NameModiscoSignificance
metacluster_0/pattern_50.017681
Absent
Tcf12
Pattern NameModiscoSignificance
metacluster_0/pattern_50.05230599999999999
Absent
Tfeb
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00043615900000000004
Absent
Rfx2
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0107077
Absent
Tfec
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00175932
Absent
Nfil3
Pattern NameModiscoSignificance
metacluster_0/pattern_90.018352
Absent
Foxa1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0139483
Absent
Neurog1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.017681
Absent
Tcf3
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0553877
metacluster_0/pattern_180.00119813
Absent
Pou2f2
Pattern NameModiscoSignificance
metacluster_0/pattern_160.033445300000000004
Absent
Foxp2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.019965200000000002
Absent
Foxo3
Pattern NameModiscoSignificance
metacluster_0/pattern_190.012851300000000001
Absent
Npas2
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00686386
Absent
Foxl2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0139483
Absent
Mxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0564808
metacluster_0/pattern_10.00125608
metacluster_0/pattern_80.013354699999999999
metacluster_0/pattern_140.00292495
Absent
Tead2
Pattern NameModiscoSignificance
metacluster_0/pattern_136.54481e-06
Absent
Hlf
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0202761
metacluster_0/pattern_140.045943
Absent
Tfe3
Pattern NameModiscoSignificance
metacluster_0/pattern_90.037412
metacluster_0/pattern_140.00159833
Absent
Atf3
Pattern NameModiscoSignificance
metacluster_0/pattern_90.00913764
Absent
Mlxip
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0548567
Absent
Egr2
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00868585
metacluster_0/pattern_80.0412231
Absent
Ptf1a
Pattern NameModiscoSignificance
metacluster_0/pattern_00.025894900000000002
Absent
Rest
Pattern NameModiscoSignificance
metacluster_0/pattern_171.6577799999999998e-12
Absent
Stat3
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0545529
Absent
Sox9
Pattern NameModiscoSignificance
metacluster_0/pattern_153.3976e-05
Absent
Maz
Pattern NameModiscoSignificance
metacluster_0/pattern_01.7096699999999997e-07
metacluster_0/pattern_80.028607499999999998
Absent
Zic3
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0536082
metacluster_0/pattern_140.059499300000000005
Absent
Stat6
Pattern NameModiscoSignificance
metacluster_0/pattern_30.05659159999999999
Absent
Sox3
Pattern NameModiscoSignificance
metacluster_0/pattern_150.00682042
metacluster_0/pattern_190.0429655
Absent
Atoh1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0541784
Absent
Foxd3
Pattern NameModiscoSignificance
metacluster_0/pattern_190.014471000000000001
Absent
Etv2
Pattern NameModiscoSignificance
metacluster_0/pattern_30.00555107
Absent
Elf3
Pattern NameModiscoSignificance
metacluster_0/pattern_30.0148386
Absent
Foxb1
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0146959
metacluster_0/pattern_190.0159608
Absent
Yy1
Pattern NameModiscoSignificance
metacluster_0/pattern_85.53892e-05
Absent
Srebf1
Pattern NameModiscoSignificance
metacluster_0/pattern_90.0317371
metacluster_0/pattern_140.0367991
Absent
Six2
Pattern NameModiscoSignificance
metacluster_0/pattern_112.1443e-12
Absent
Six4
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00011470799999999999
Absent
Rfx4
Pattern NameModiscoSignificance
metacluster_0/pattern_104.19576e-05
Absent
Zfx
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0245726
metacluster_0/pattern_10.0262501
metacluster_0/pattern_60.0536082
metacluster_0/pattern_80.0579251
metacluster_0/pattern_140.021831200000000002
Absent
Tcf7l1
Pattern NameModiscoSignificance
metacluster_0/pattern_180.00284761
Absent
Rfx6
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0005684080000000001
Absent
Msgn1
Pattern NameModiscoSignificance
metacluster_0/pattern_150.0437854
Absent
Foxq1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00439099
Absent
Rela
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00021945099999999998
Absent
Bhlhe40
Pattern NameModiscoSignificance
metacluster_0/pattern_140.00856754
Absent
Sox17
Pattern NameModiscoSignificance
metacluster_0/pattern_150.0500937
Absent
Snai1
Pattern NameModiscoSignificance
metacluster_0/pattern_50.0553877
Absent
Tcf7
Pattern NameModiscoSignificance
metacluster_0/pattern_180.020005099999999998
Absent
Gm5294
Pattern NameModiscoSignificance
metacluster_0/pattern_190.007459100000000001
Absent
Tcfl5
Pattern NameModiscoSignificance
metacluster_0/pattern_140.013911600000000001
Absent
Bhlhe22
Pattern NameModiscoSignificance
metacluster_0/pattern_50.044955300000000004
Absent
Mlx
Pattern NameModiscoSignificance
metacluster_0/pattern_140.011389100000000001
Absent
Max
Pattern NameModiscoSignificance
metacluster_0/pattern_140.0214319
Absent
Unique Homer TFs: #56
TF NameModiscoHomer
Nkx1-2Absent
Pattern NameHomerSignificance
motif3.motif0.0222635
ArxAbsent
Pattern NameHomerSignificance
motif3.motif0.0215532
Msx1Absent
Pattern NameHomerSignificance
motif3.motif0.0259827
Lhx9Absent
Pattern NameHomerSignificance
motif3.motif0.0163811
IsxAbsent
Pattern NameHomerSignificance
motif3.motif0.0514337
Isl2Absent
Pattern NameHomerSignificance
motif3.motif0.0597203
Hoxa5Absent
Pattern NameHomerSignificance
motif3.motif0.0394848
UncxAbsent
Pattern NameHomerSignificance
motif3.motif0.031042700000000003
RaxAbsent
Pattern NameHomerSignificance
motif3.motif0.0369695
Alx3Absent
Pattern NameHomerSignificance
motif3.motif0.020721700000000003
Gbx2Absent
Pattern NameHomerSignificance
motif3.motif0.0240568
Prop1Absent
Pattern NameHomerSignificance
motif3.motif0.0240568
Cphx1Absent
Pattern NameHomerSignificance
motif3.motif0.0104428
Prrx1Absent
Pattern NameHomerSignificance
motif3.motif0.0369695
Hoxa6Absent
Pattern NameHomerSignificance
motif3.motif0.047455000000000004
Pax7Absent
Pattern NameHomerSignificance
motif3.motif0.0360655
Hoxb5Absent
Pattern NameHomerSignificance
motif3.motif0.0453179
Evx1Absent
Pattern NameHomerSignificance
motif3.motif0.032470599999999995
Lmx1bAbsent
Pattern NameHomerSignificance
motif3.motif0.0500587
Nkx6-1Absent
Pattern NameHomerSignificance
motif3.motif0.0369695
Shox2Absent
Pattern NameHomerSignificance
motif3.motif0.0215532
Barx1Absent
Pattern NameHomerSignificance
motif3.motif0.047455000000000004
Pax6Absent
Pattern NameHomerSignificance
motif3.motif0.0394848
Hmx2Absent
Pattern NameHomerSignificance
motif3.motif0.016446099999999998
Hoxb3Absent
Pattern NameHomerSignificance
motif3.motif0.0597203
Lhx6Absent
Pattern NameHomerSignificance
motif3.motif0.016062299999999998
Lbx2Absent
Pattern NameHomerSignificance
motif3.motif0.0240568
Nkx6-3Absent
Pattern NameHomerSignificance
motif3.motif0.031042700000000003
Vax2Absent
Pattern NameHomerSignificance
motif3.motif0.0572096
Zbtb1Absent
Pattern NameHomerSignificance
motif2.motif0.016601599999999998
En2Absent
Pattern NameHomerSignificance
motif3.motif0.0369695
Hoxa2Absent
Pattern NameHomerSignificance
motif3.motif0.0537414
Barhl1Absent
Pattern NameHomerSignificance
motif3.motif0.0360655
Hmx1Absent
Pattern NameHomerSignificance
motif3.motif0.031042700000000003
Hoxa3Absent
Pattern NameHomerSignificance
motif3.motif0.047455000000000004
Alx4Absent
Pattern NameHomerSignificance
motif3.motif0.0215532
Isl1Absent
Pattern NameHomerSignificance
motif3.motif0.031042700000000003
Emx2Absent
Pattern NameHomerSignificance
motif3.motif0.0537414
Hoxc5Absent
Pattern NameHomerSignificance
motif3.motif0.0597203
Zbtb33Absent
Pattern NameHomerSignificance
motif17.motif0.000116003
E2f6Absent
Pattern NameHomerSignificance
motif2.motif0.025105900000000004
Lhx2Absent
Pattern NameHomerSignificance
motif3.motif0.018381
Barhl2Absent
Pattern NameHomerSignificance
motif3.motif0.0215532
Phox2aAbsent
Pattern NameHomerSignificance
motif3.motif0.0514337
Hoxb4Absent
Pattern NameHomerSignificance
motif3.motif0.0421936
Prrx2Absent
Pattern NameHomerSignificance
motif3.motif0.032470599999999995
Vax1Absent
Pattern NameHomerSignificance
motif3.motif0.0493859
Hoxa1Absent
Pattern NameHomerSignificance
motif3.motif0.0360655
Nkx1-1Absent
Pattern NameHomerSignificance
motif3.motif0.0493859
Lhx4Absent
Pattern NameHomerSignificance
motif3.motif0.0104428
Hoxd1Absent
Pattern NameHomerSignificance
motif3.motif0.0121059
Alx1Absent
Pattern NameHomerSignificance
motif3.motif0.0222635
Vsx1Absent
Pattern NameHomerSignificance
motif3.motif0.0597203
Gbx1Absent
Pattern NameHomerSignificance
motif3.motif0.0514337
BsxAbsent
Pattern NameHomerSignificance
motif3.motif0.0215532
Hoxd8Absent
Pattern NameHomerSignificance
motif3.motif0.054539300000000006