# Parameters
data_name = "Hoxd11"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:13:38,023 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Hoxd11: Motif: M00493_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxd11: #6

Cell type	Modisco	Homer
wES;limb;E11.5;D;En	Pattern: metacluster_0/pattern_3 Significance: 0.011048299999999999 / Pattern: metacluster_0/pattern_5 Significance: 0.0008240739999999999	Pattern: motif8.motif Significance: 0.000716394
wES;Hnd_lmb;E11.5;D;En	Pattern: metacluster_0/pattern_1 Significance: 0.0006295319999999999 / Pattern: metacluster_0/pattern_3 Significance: 0.0257873	Pattern: motif5.motif Significance: 0.00260755
LRG_INTSTN;8wks;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00633628	Pattern: motif4.motif Significance: 0.00021873
wES;MSDRM;E11.5;D;En	Pattern: metacluster_0/pattern_5 Significance: 0.018609	Pattern: motif2.motif Significance: 0.0224549
ThMS_MEC;Aire++;A;GEO	Pattern: metacluster_1/pattern_13 Significance: 0.00826595	Pattern: motif15.motif Significance: 0.0126792
SML_INTSTN;A;CL	Pattern: metacluster_0/pattern_4 Significance: 0.0020347	Pattern: motif3.motif Significance: 0.0015452

Unique Cell types only TF-MoDISco finds Hoxd11: #8

Cell type	Modisco	Homer
wES;limb;E14.5;D;En	Pattern: metacluster_1/pattern_13 Significance: 0.0139593	Absent
wES;Fr_lmb;E11.5;D;En	Pattern: metacluster_1/pattern_4 Significance: 0.00617161 / Pattern: metacluster_1/pattern_13 Significance: 0.0278215	Absent
npES;posterior_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_6 Significance: 0.0146656	Absent
LNG_TRM_HSC;A;CL	Pattern: metacluster_1/pattern_20 Significance: 0.052539800000000005	Absent
LRG_INTSTN;A;CL	Pattern: metacluster_0/pattern_11 Significance: 0.00438758	Absent
wES.Fr_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_2 Significance: 0.04976830000000001	Absent
Md_BRN;D;En	Pattern: metacluster_1/pattern_3 Significance: 0.0487132	Absent
wES;WHL_BRN;E14.5;D;En	Pattern: metacluster_1/pattern_0 Significance: 0.0425731	Absent

Unique Cell types only Homer finds Hoxd11: #1

Cell type	Modisco	Homer
KDNY;P0;D;En	Absent	Pattern: motif4.motif Significance: 0.000207259