In [1]:
# Parameters
data_name = "Hoxa7"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:28,246 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxa7: Motif: M00477_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxa7: #18

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00373843

/

Pattern: metacluster_0/pattern_5

Significance: 0.0481491

Pattern: motif8.motif

Significance: 0.00233401

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0245602

/

Pattern: metacluster_0/pattern_3

Significance: 0.00609804

Pattern: motif3.motif

Significance: 0.05544299999999999

/

Pattern: motif5.motif

Significance: 0.041835699999999997

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0480089

Pattern: motif4.motif

Significance: 0.00785201

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0299978

Pattern: motif9.motif

Significance: 0.035362

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.022418900000000002

Pattern: motif6.motif

Significance: 0.058399900000000005

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0376802

Pattern: motif2.motif

Significance: 0.028853800000000002

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0410526

Pattern: motif3.motif

Significance: 0.0282002

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.042789

Pattern: motif3.motif

Significance: 0.045032199999999994

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0437952

Pattern: motif13.motif

Significance: 0.048135000000000004

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0015555999999999999

Pattern: motif2.motif

Significance: 0.0463649

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.0574448

Pattern: motif3.motif

Significance: 0.013162100000000001

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0505598

Pattern: motif15.motif

Significance: 0.0271638

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0258947

Pattern: motif2.motif

Significance: 0.0314679

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0386866

Pattern: motif4.motif

Significance: 0.059654599999999995

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0202734

Pattern: motif2.motif

Significance: 0.0322216

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0481865

Pattern: motif6.motif

Significance: 0.05888290000000001

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.016995

Pattern: motif14.motif

Significance: 0.0445302

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.014546000000000002

Pattern: motif2.motif

Significance: 0.030438099999999996

Unique Cell types only TF-MoDISco finds Hoxa7: #12

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.059966599999999995

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00707521

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.04917609999999999

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.026329200000000004

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00122842

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.0369026

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0353279

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0505859

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.00770701

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.051033999999999996

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0341351

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0346876

Absent
Unique Cell types only Homer finds Hoxa7: #3

Cell typeModiscoHomer
wES;Hnd_BRN;E14.5;D;EnAbsent

Pattern: motif3.motif

Significance: 0.0303488

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.00178455

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.04636780000000001