# Parameters
data_name = "ILC2_Nippo;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_83-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_83-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:59:05,791 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	ILC2 (Nippo infected)
Cell Group	Other Immune Cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	123016	95643	10.99	51626771	11561780	0.224	7193297	0.1394	17519486	0.3395

Modelling Metadata

Metric	Value
auPRC	0.5752
Calibrated Recall at 50% FDR	0.226
Number of Positive Examples in Test Data	113094
Number of Negative Examples in Test Data	7957757
Imbalance Ratio in Test Data	0.014
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #21

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 4408 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 3683 SequenceContrib ScoresHyp_Contrib Scores	Ets1, Erg, Etv4, Fli1, Elk1, Elk4, Etv2, Gabpa, Etv5, Elk3, Fev, Spi1, Etv6, Elf2, XP_911724.4, Etv3, Etv1, Elf1, Spib, Ehf, Elf4, Elf5, Elf3, Irf8, Spdef, Spic, Irf4, Zscan10, Stat3
metacluster_1/pattern_2 # seqlets: 2461 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp3, Sp1, Klf3, Sp4, Klf6, E2f4, Egr1, Klf4, Klf5, Zbtb17, Sp5, Klf7, Wt1, Klf8, Klf12, Egr2, Zfp281, Klf1, Maz, E2f1, Klf15, Srebf2, Egr3, Sall4, Zfx
metacluster_1/pattern_3 # seqlets: 1320 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Stat1, Irf7, Prdm1, Stat2, Batf3, Irf9, Irf3, Irf5
metacluster_1/pattern_4 # seqlets: 1135 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_5 # seqlets: 1090 SequenceContrib ScoresHyp_Contrib Scores	Fos, Jund, Jun, Junb, Fosb, Fosl1, Fosl2, Atf3, Jdp2, Batf, Bach2, Bach1, Nfe2, Nfe2l2
metacluster_1/pattern_6 # seqlets: 946 SequenceContrib ScoresHyp_Contrib Scores	Nfkb1, Rela, Relb, Nfkb2, Rel
metacluster_1/pattern_7 # seqlets: 931 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Creb5, Atf7, Atf2, Atf1, Crem, Nfil3, Mafb, Tef, Dbp, Hlf, Rxrb, Gmeb2, Cebpb, Cebpa, Gmeb1
metacluster_1/pattern_8 # seqlets: 905 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Cbfb, Runx3
metacluster_1/pattern_9 # seqlets: 872 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_10 # seqlets: 850 SequenceContrib ScoresHyp_Contrib Scores	Gata3, Gata1, Gata2, Gata4, Tal1, Mecom, Gata6
metacluster_1/pattern_11 # seqlets: 843 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_12 # seqlets: 624 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42, Rfx1, Mxi1, Usf2
metacluster_1/pattern_13 # seqlets: 594 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_14 # seqlets: 580 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_15 # seqlets: 551 SequenceContrib ScoresHyp_Contrib Scores	Hes7, Hes1
metacluster_1/pattern_16 # seqlets: 393 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfe3, Tfeb, Arntl, Tfec, Mitf, Clock, Srebf1, Arnt, Bhlhe40, Mlx, Npas2, Mycn, Tcfl5, Max, Creb3l2, Myc, Bhlhe41, Nr1h4, Xbp1
metacluster_1/pattern_17 # seqlets: 367 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6, Sox2, Pou5f1
metacluster_1/pattern_18 # seqlets: 193 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_19 # seqlets: 83 SequenceContrib ScoresHyp_Contrib Scores	Nfia, Nfib, Nfic
metacluster_1/pattern_20 # seqlets: 62 SequenceContrib ScoresHyp_Contrib Scores	Rorc, Pparg, Nr1d2

Click here for Motifs by TF-MoDISco: #163

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 5.45294e-16
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 8.755289999999998e-08
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00117026 metacluster_1/pattern_14 0.0395871
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00117026
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012563
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00117026
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012563
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00131082
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 3.19652e-05 metacluster_1/pattern_18 0.0593231
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00121048
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00059751
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00117026
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0006903289999999999
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0510707
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00110545 metacluster_1/pattern_18 0.055643399999999996
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.010677899999999999 metacluster_1/pattern_18 0.0491707
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00125429
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012563
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00136901
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00265106
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00440175 metacluster_1/pattern_3 0.029264099999999998
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00674565
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00586317
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0249605
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0230699
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.020297700000000002 metacluster_1/pattern_3 5.4249099999999995e-05
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.020297700000000002
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0214631
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0230699 metacluster_1/pattern_3 0.00506477
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0387056
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0576058
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.751e-11 metacluster_1/pattern_11 0.00012356700000000002 metacluster_1/pattern_12 2.30702e-05 metacluster_1/pattern_15 0.00109962 metacluster_1/pattern_16 0.00713471
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.1258299999999998e-09 metacluster_1/pattern_11 0.00201706 metacluster_1/pattern_12 0.00123732 metacluster_1/pattern_15 0.00109962 metacluster_1/pattern_16 0.046944900000000005
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000670977 metacluster_1/pattern_11 0.00372683 metacluster_1/pattern_12 0.00230732 metacluster_1/pattern_15 0.00445228 metacluster_1/pattern_16 0.0403536
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 2.87362e-07 metacluster_1/pattern_12 0.035022000000000005 metacluster_1/pattern_15 0.00109962
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00170992 metacluster_1/pattern_12 0.0429908 metacluster_1/pattern_15 0.0109129
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000469291 metacluster_1/pattern_15 0.00647379
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000544833 metacluster_1/pattern_15 0.00886011
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.046462800000000005 metacluster_1/pattern_15 0.0412972
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00168651 metacluster_1/pattern_15 0.00886011
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000670977
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00150893 metacluster_1/pattern_12 0.0144593
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00165176 metacluster_1/pattern_12 0.035022000000000005
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00170992 metacluster_1/pattern_15 0.00109962
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00170992 metacluster_1/pattern_12 0.035022000000000005
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00264962 metacluster_1/pattern_15 0.00109962
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00311316 metacluster_1/pattern_15 0.00162532
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0386996 metacluster_1/pattern_12 0.0489179
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00852078 metacluster_1/pattern_15 0.0124166
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.040651 metacluster_1/pattern_15 0.00647379
Maz	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00977189
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0115637
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_2 0.031250799999999995
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0341647 metacluster_1/pattern_16 0.00724852
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.035087400000000005
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.035087400000000005
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0414164 metacluster_1/pattern_11 0.00201706 metacluster_1/pattern_12 0.00291131 metacluster_1/pattern_16 0.0129165
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_3 4.31567e-12
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00016043899999999999
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_3 7.2651e-06
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_3 8.264290000000001e-05
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00016043899999999999
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00128978
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00128978
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00247249
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00910311
Irf5	Pattern Name Modisco Significance metacluster_1/pattern_3 0.029264099999999998
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 4.61747e-11
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 1.03868e-05
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 1.03868e-05
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.11246e-05
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00010583700000000001
Fos	Pattern Name Modisco Significance metacluster_1/pattern_5 6.45124e-07
Jund	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00295039 metacluster_1/pattern_7 0.0382017
Jun	Pattern Name Modisco Significance metacluster_1/pattern_5 0.020078099999999998 metacluster_1/pattern_7 0.01986
Junb	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0165739 metacluster_1/pattern_7 0.041443
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_5 1.77545e-05
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0258211 metacluster_1/pattern_7 0.0236579
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00034282599999999996 metacluster_1/pattern_7 0.041443
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000104752 metacluster_1/pattern_7 0.0382017
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000157398 metacluster_1/pattern_7 0.0008058119999999999 metacluster_1/pattern_16 0.0325774
Batf	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0330893
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00720635
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0147351
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0147351
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0159633
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_6 3.84432e-08
Rela	Pattern Name Modisco Significance metacluster_1/pattern_6 7.86211e-06
Relb	Pattern Name Modisco Significance metacluster_1/pattern_6 4.66723e-07
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_6 3.929930000000001e-06
Rel	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00719826
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00019145299999999998 metacluster_1/pattern_16 0.0475422
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_7 7.39189e-05
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000184838 metacluster_1/pattern_16 0.019683700000000002
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000570824 metacluster_1/pattern_16 0.0311839
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.029544499999999998 metacluster_1/pattern_16 0.0367999
Crem	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00124391
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00550052
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00678174
Tef	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00829845
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_7 0.022304
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0256186 metacluster_1/pattern_16 0.041924
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.028486
Gmeb2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.029544499999999998
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0382017
Cebpa	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0448231
Gmeb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.055273199999999995
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00352882
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0483978
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000828072
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00917839
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0446921
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00226441
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00226441
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_10 0.009428299999999999
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.009428299999999999
Mecom	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0207935
Gata6	Pattern Name Modisco Significance metacluster_1/pattern_10 0.034417800000000005
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_11 6.64726e-07
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_12 2.54705e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_12 1.83461e-05
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011291299999999999
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011652500000000001 metacluster_1/pattern_17 8.951510000000001e-08
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.035022000000000005 metacluster_1/pattern_16 0.00229323
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0409213 metacluster_1/pattern_16 0.00628307
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_13 2.91171e-20
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_13 2.91171e-20
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_13 2.1991999999999999e-13
Hes7	Pattern Name Modisco Significance metacluster_1/pattern_15 0.033032099999999995
Hes1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0377026
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0211379
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000723546
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00021799599999999998
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00713471
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000723546
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000504636
Clock	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0333307
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0475422
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00109894
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0206353
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00673526
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00329277
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0140118
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_16 0.017096700000000003
Max	Pattern Name Modisco Significance metacluster_1/pattern_16 0.022496000000000002
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0311839
Myc	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0311839
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0325774
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0367999
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0502845
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00058995
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00597864
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_17 3.73648e-05
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000435128
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0007252710000000001
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0323262
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0162953
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_19 1.06303e-05
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_19 2.90157e-05
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0184233
Rorc	Pattern Name Modisco Significance metacluster_1/pattern_20 0.00241243
Pparg	Pattern Name Modisco Significance metacluster_1/pattern_20 0.00140117
Nr1d2	Pattern Name Modisco Significance metacluster_1/pattern_20 0.00237773

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #82

TF Name	Modisco	Homer
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0230699	Pattern Name Homer Significance motif2.motif 0.027795599999999997
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00034282599999999996 metacluster_1/pattern_7 0.041443	Pattern Name Homer Significance motif7.motif 2.1404e-06
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0115637	Pattern Name Homer Significance motif3.motif 0.00299132
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00170992 metacluster_1/pattern_12 0.0429908 metacluster_1/pattern_15 0.0109129	Pattern Name Homer Significance motif3.motif 0.0119398
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000469291 metacluster_1/pattern_15 0.00647379	Pattern Name Homer Significance motif3.motif 0.001008
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00852078 metacluster_1/pattern_15 0.0124166	Pattern Name Homer Significance motif3.motif 0.0400723
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00117026 metacluster_1/pattern_14 0.0395871	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
Jun	Pattern Name Modisco Significance metacluster_1/pattern_5 0.020078099999999998 metacluster_1/pattern_7 0.01986	Pattern Name Homer Significance motif7.motif 2.74888e-05
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00010583700000000001	Pattern Name Homer Significance motif9.motif 0.0228472
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.11246e-05	Pattern Name Homer Significance motif9.motif 0.030215499999999996
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000104752 metacluster_1/pattern_7 0.0382017	Pattern Name Homer Significance motif7.motif 0.000120915
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00117026	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
Irf5	Pattern Name Modisco Significance metacluster_1/pattern_3 0.029264099999999998	Pattern Name Homer Significance motif14.motif 0.0599499
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_13 2.91171e-20	Pattern Name Homer Significance motif5.motif 3.11789e-05
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0147351	Pattern Name Homer Significance motif7.motif 0.00516812
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00117026	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 5.45294e-16	Pattern Name Homer Significance motif1.motif 0.000440325
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 1.03868e-05	Pattern Name Homer Significance motif9.motif 0.00133608
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000157398 metacluster_1/pattern_7 0.0008058119999999999 metacluster_1/pattern_16 0.0325774	Pattern Name Homer Significance motif7.motif 0.00151714
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00131082	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00016043899999999999	Pattern Name Homer Significance motif14.motif 0.00559073
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_3 4.31567e-12	Pattern Name Homer Significance motif14.motif 0.0036805999999999996
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_11 6.64726e-07	Pattern Name Homer Significance motif12.motif 2.9757399999999997e-05
Junb	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0165739 metacluster_1/pattern_7 0.041443	Pattern Name Homer Significance motif7.motif 0.0519895
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00170992 metacluster_1/pattern_15 0.00109962	Pattern Name Homer Significance motif3.motif 0.00037317800000000005
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0214631	Pattern Name Homer Significance motif2.motif 0.057082799999999996
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012563	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0006903289999999999	Pattern Name Homer Significance motif2.motif 0.000424895
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012563	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00674565	Pattern Name Homer Significance motif2.motif 0.040052199999999996
Batf	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0330893	Pattern Name Homer Significance motif7.motif 0.000120915
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.046462800000000005 metacluster_1/pattern_15 0.0412972	Pattern Name Homer Significance motif3.motif 0.00622415
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0147351	Pattern Name Homer Significance motif7.motif 0.016896
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 2.87362e-07 metacluster_1/pattern_12 0.035022000000000005 metacluster_1/pattern_15 0.00109962	Pattern Name Homer Significance motif3.motif 0.00021504
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_3 8.264290000000001e-05	Pattern Name Homer Significance motif14.motif 0.00108289
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00311316 metacluster_1/pattern_15 0.00162532	Pattern Name Homer Significance motif3.motif 0.0315724
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00586317	Pattern Name Homer Significance motif2.motif 0.00212239
Relb	Pattern Name Modisco Significance metacluster_1/pattern_6 4.66723e-07	Pattern Name Homer Significance motif11.motif 3.37012e-05
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0159633	Pattern Name Homer Significance motif7.motif 0.016896
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00150893 metacluster_1/pattern_12 0.0144593	Pattern Name Homer Significance motif3.motif 0.00278632
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00121048	Pattern Name Homer Significance motif2.motif 0.000733183
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 4.61747e-11	Pattern Name Homer Significance motif9.motif 0.00392986
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_5 1.77545e-05	Pattern Name Homer Significance motif7.motif 0.00024037
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.040651 metacluster_1/pattern_15 0.00647379	Pattern Name Homer Significance motif3.motif 0.05695700000000001
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00264962 metacluster_1/pattern_15 0.00109962	Pattern Name Homer Significance motif3.motif 0.0008103019999999999
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0249605	Pattern Name Homer Significance motif2.motif 0.0397352
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00136901	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000544833 metacluster_1/pattern_15 0.00886011	Pattern Name Homer Significance motif3.motif 0.000638639
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00720635	Pattern Name Homer Significance motif7.motif 0.0028752
Jund	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00295039 metacluster_1/pattern_7 0.0382017	Pattern Name Homer Significance motif7.motif 0.0249606
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.751e-11 metacluster_1/pattern_11 0.00012356700000000002 metacluster_1/pattern_12 2.30702e-05 metacluster_1/pattern_15 0.00109962 metacluster_1/pattern_16 0.00713471	Pattern Name Homer Significance motif3.motif 4.2335299999999994e-05
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012563	Pattern Name Homer Significance motif2.motif 0.0028585999999999998
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 8.755289999999998e-08	Pattern Name Homer Significance motif1.motif 0.0008670969999999999
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_13 2.1991999999999999e-13	Pattern Name Homer Significance motif5.motif 7.72719e-05
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 1.03868e-05	Pattern Name Homer Significance motif9.motif 0.0013318
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_13 2.91171e-20	Pattern Name Homer Significance motif5.motif 1.58406e-05
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.020297700000000002 metacluster_1/pattern_3 5.4249099999999995e-05	Pattern Name Homer Significance motif14.motif 0.0599499
Rela	Pattern Name Modisco Significance metacluster_1/pattern_6 7.86211e-06	Pattern Name Homer Significance motif11.motif 0.000152067
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00168651 metacluster_1/pattern_15 0.00886011	Pattern Name Homer Significance motif3.motif 0.0315724
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_6 3.84432e-08	Pattern Name Homer Significance motif11.motif 3.04988e-06
Fos	Pattern Name Modisco Significance metacluster_1/pattern_5 6.45124e-07	Pattern Name Homer Significance motif7.motif 2.1404e-06
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00247249	Pattern Name Homer Significance motif14.motif 0.000648348
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0386996 metacluster_1/pattern_12 0.0489179	Pattern Name Homer Significance motif3.motif 0.0315724
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_6 3.929930000000001e-06	Pattern Name Homer Significance motif11.motif 2.43708e-05
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0510707	Pattern Name Homer Significance motif2.motif 0.058888800000000005
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 3.19652e-05 metacluster_1/pattern_18 0.0593231	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.020297700000000002	Pattern Name Homer Significance motif2.motif 0.0397352
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0258211 metacluster_1/pattern_7 0.0236579	Pattern Name Homer Significance motif7.motif 0.0367548
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_2 0.031250799999999995	Pattern Name Homer Significance motif3.motif 0.00733433
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00125429	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00265106	Pattern Name Homer Significance motif2.motif 0.00317797
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00059751	Pattern Name Homer Significance motif2.motif 2.29158e-05
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0230699 metacluster_1/pattern_3 0.00506477	Pattern Name Homer Significance motif14.motif 0.0599499
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00117026	Pattern Name Homer Significance motif2.motif 0.00037517599999999996
Rel	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00719826	Pattern Name Homer Significance motif11.motif 0.017124700000000003
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.010677899999999999 metacluster_1/pattern_18 0.0491707	Pattern Name Homer Significance motif2.motif 0.012318700000000002
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.1258299999999998e-09 metacluster_1/pattern_11 0.00201706 metacluster_1/pattern_12 0.00123732 metacluster_1/pattern_15 0.00109962 metacluster_1/pattern_16 0.046944900000000005	Pattern Name Homer Significance motif3.motif 7.767729999999999e-05
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000670977	Pattern Name Homer Significance motif3.motif 0.00764477
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00165176 metacluster_1/pattern_12 0.035022000000000005	Pattern Name Homer Significance motif3.motif 0.0315724
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00678174	Pattern Name Homer Significance motif7.motif 0.033467199999999996
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00110545 metacluster_1/pattern_18 0.055643399999999996	Pattern Name Homer Significance motif2.motif 0.00858428
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000670977 metacluster_1/pattern_11 0.00372683 metacluster_1/pattern_12 0.00230732 metacluster_1/pattern_15 0.00445228 metacluster_1/pattern_16 0.0403536	Pattern Name Homer Significance motif3.motif 0.00330419

Unique TF-MoDISco TFs: #81

TF Name	Modisco	Homer
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.035087400000000005	Absent
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00226441	Absent
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011291299999999999	Absent
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00016043899999999999	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00128978	Absent
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_12 2.54705e-06	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0414164 metacluster_1/pattern_11 0.00201706 metacluster_1/pattern_12 0.00291131 metacluster_1/pattern_16 0.0129165	Absent
Mecom	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0207935	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00170992 metacluster_1/pattern_12 0.035022000000000005	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000570824 metacluster_1/pattern_16 0.0311839	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0211379	Absent
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.029544499999999998 metacluster_1/pattern_16 0.0367999	Absent
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_12 1.83461e-05	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0256186 metacluster_1/pattern_16 0.041924	Absent
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00226441	Absent
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00352882	Absent
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.009428299999999999	Absent
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00128978	Absent
Rorc	Pattern Name Modisco Significance metacluster_1/pattern_20 0.00241243	Absent
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0446921	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.011652500000000001 metacluster_1/pattern_17 8.951510000000001e-08	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000723546	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_16 0.017096700000000003	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_17 3.73648e-05	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.035022000000000005 metacluster_1/pattern_16 0.00229323	Absent
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0367999	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000184838 metacluster_1/pattern_16 0.019683700000000002	Absent
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00019145299999999998 metacluster_1/pattern_16 0.0475422	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_7 0.022304	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00673526	Absent
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000828072	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00977189	Absent
Gmeb2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.029544499999999998	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0333307	Absent
Cebpa	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0448231	Absent
Pparg	Pattern Name Modisco Significance metacluster_1/pattern_20 0.00140117	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_7 7.39189e-05	Absent
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0382017	Absent
Gata6	Pattern Name Modisco Significance metacluster_1/pattern_10 0.034417800000000005	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_16 0.022496000000000002	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0311839	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00124391	Absent
Hes1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0377026	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0311839	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00713471	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0206353	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00597864	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00021799599999999998	Absent
Nr1d2	Pattern Name Modisco Significance metacluster_1/pattern_20 0.00237773	Absent
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.028486	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000435128	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00550052	Absent
Gmeb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.055273199999999995	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_3 7.2651e-06	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0341647 metacluster_1/pattern_16 0.00724852	Absent
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.035087400000000005	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0409213 metacluster_1/pattern_16 0.00628307	Absent
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_19 2.90157e-05	Absent
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0162953	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00329277	Absent
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_10 0.009428299999999999	Absent
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00917839	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000504636	Absent
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00440175 metacluster_1/pattern_3 0.029264099999999998	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0007252710000000001	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00109894	Absent
Hes7	Pattern Name Modisco Significance metacluster_1/pattern_15 0.033032099999999995	Absent
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0387056	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00910311	Absent
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0576058	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0502845	Absent
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0184233	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00829845	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000723546	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0475422	Absent
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_19 1.06303e-05	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0325774	Absent
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0323262	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0140118	Absent
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0483978	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00058995	Absent

Unique Homer TFs: #8

TF Name	Modisco	Homer
Maf	Absent	Pattern Name Homer Significance motif7.motif 0.033467199999999996
Zbtb1	Absent	Pattern Name Homer Significance motif3.motif 0.0203585
Mafk	Absent	Pattern Name Homer Significance motif7.motif 0.0133762
E2f7	Absent	Pattern Name Homer Significance motif3.motif 0.00985333
Mafa	Absent	Pattern Name Homer Significance motif7.motif 0.010812200000000001
Mafg	Absent	Pattern Name Homer Significance motif7.motif 0.016896
Maff	Absent	Pattern Name Homer Significance motif7.motif 0.0208599
E2f6	Absent	Pattern Name Homer Significance motif3.motif 0.035068300000000004