In [1]:
# Parameters
data_name = "Hoxc13"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend.
2019-08-23 11:13:13,945 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)
TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxc13: Motif: M00389_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxc13: #6

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0076644999999999994

/

Pattern: metacluster_0/pattern_5

Significance: 0.00120349

Pattern: motif8.motif

Significance: 0.000811764

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00777344

/

Pattern: metacluster_1/pattern_13

Significance: 0.0138621

Pattern: motif11.motif

Significance: 0.0199653

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00534071

/

Pattern: metacluster_0/pattern_3

Significance: 0.0143553

Pattern: motif5.motif

Significance: 0.000349385

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00289725

Pattern: motif4.motif

Significance: 0.000968607

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.027222500000000004

Pattern: motif9.motif

Significance: 0.0475074

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_4

Significance: 0.000233213

Pattern: motif3.motif

Significance: 0.000273813

Unique Cell types only TF-MoDISco finds Hoxc13: #11

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00554827

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0192879

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0427305

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0426085

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.032959699999999995

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.00805897

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0298179

Absent
wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.025462000000000002

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0437092

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0596847

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.020796400000000003

Absent
Unique Cell types only Homer finds Hoxc13: #3

Cell typeModiscoHomer
G_NRN_P;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.050174300000000005

Md_BRN;D;EnAbsent

Pattern: motif14.motif

Significance: 0.0185814

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.00289777