In [1]:
# Parameters
data_name = "Ebf1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:02:37,182 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Ebf1: Motif: M10469_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Ebf1: #9

Cell typeModiscoHomer
preB;A;CL

Pattern: metacluster_1/pattern_8

Significance: 5.0231499999999995e-05

Pattern: motif13.motif

Significance: 0.00355674

aB;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00374193

Pattern: motif18.motif

Significance: 0.0223052

prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.000276304

Pattern: motif17.motif

Significance: 0.0378296

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.000618038

Pattern: motif14.motif

Significance: 0.00111771

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00098881

Pattern: motif8.motif

Significance: 0.00433892

CH12.LX;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.000378582

Pattern: motif6.motif

Significance: 0.00055744

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00492497

Pattern: motif20.motif

Significance: 0.00023553799999999998

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0001629

Pattern: motif5.motif

Significance: 1.3983900000000002e-05

MN1;D;En

Pattern: metacluster_1/pattern_12

Significance: 8.311219999999999e-06

Pattern: motif7.motif

Significance: 0.00010156299999999999

Unique Cell types only TF-MoDISco finds Ebf1: #33

Cell typeModiscoHomer
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_14

Significance: 0.000287916

Absent
proB;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.00203024

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.000699385

Absent
immatureB;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.00110143

Absent
GC_B;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.00087444

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_27

Significance: 0.0088229

Absent
aB_LPS;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.00968029

Absent
B_SPLND;A;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.00451719

Absent
aB_LPS+IL21;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.005044

Absent
aB_LSP+a_d_dextran;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.00612708

Absent
preB_BMD;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00107224

Absent
3134_mammaryADNCRCNM;D;En

Pattern: metacluster_0/pattern_18

Significance: 0.00032532

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.00111178

Absent
3T3-L1;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.0323182

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.05932130000000001

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.018963400000000002

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.025378

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.026169

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_15

Significance: 0.00138498

Absent
aB_LPS+IL4+Oligomycin_24h;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.00118328

Absent
CH12_QNTPLE;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.00142905

Absent
wCH12;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.00652394

Absent
CH12;med14;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.000232146

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_22

Significance: 0.00222614

Absent
3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_22

Significance: 0.000152967

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.036938099999999995

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.00126529

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.00514254

/

Pattern: metacluster_1/pattern_20

Significance: 0.032646

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_18

Significance: 0.0012155999999999998

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_9

Significance: 0.00331106

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_9

Significance: 0.00240188

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.0349822

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.055113199999999994

Absent
Unique Cell types only Homer finds Ebf1: #1

Cell typeModiscoHomer
immatureB_SPLND;CD43-_CD11b-;D;EnAbsent

Pattern: motif14.motif

Significance: 0.0290212