In [1]:
# Parameters
data_name = "wCH12_drug;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_93-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_93-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"
In [2]:
from matlas.reports import display_metadata
load data from labcluster
Using TensorFlow backend.
2019-08-30 19:01:05,448 [WARNING] git-lfs not installed
In [3]:
display_metadata(data_name, perf_file, reportfile, sheetname)
    Sample Information
    MetaData NameDescription
    Cell typech12 wt with drug
    Cell GroupCancer or Immortalized cells
    Experiment NameATAC
    Experiment GroupCasellas Lab
    Pipeline Output
    replicateNaïve overlap peaksIDR peaksTSS enrichment (< 8 is very poor <10 is low)Final number of unique mapping, dup-filtered, chrM filtered readsNumber of reads in called peak regionsFraction of reads in called peak regionsNumber of reads in promoter regionsFraction of reads in promoter regionsNumber of reads in enhancer regionsFraction of reads in enhancer regions
    rep12133471744614.9591207358221NANANANANANA
    Modelling Metadata
    MetricValue
    auPRC0.5027
    Calibrated Recall at 50% FDR0.275
    Number of Positive Examples in Test Data71696
    Number of Negative Examples in Test Data7999155
    Imbalance Ratio in Test Data0.0089
    Test Chromosomeschr2, chr3, chr19
In [4]:
from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns
In [5]:
display_denovo_patterns(data_name, modisco_root=modisco_root)
TF-MoDISco is using the TensorFlow backend.
The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco
Click here for Denovo Patterns by TF-MoDISco: #23
Pattern NameTF Name(s)Modisco
metacluster_1/pattern_0 # seqlets: 3508 SequenceContrib ScoresHyp_Contrib Scores
Sp2, Sp3, Sp1, Klf3, Sp4, E2f4, Zbtb17, Klf4, Klf6, Sp5,

Egr1, Klf5, Klf7, Zfp281, Wt1, Klf8, Egr2, Klf12, Maz, Klf1, E2f1,

Klf15, Srebf2, Sall4, Egr3
metacluster_1/pattern_1 # seqlets: 3349 SequenceContrib ScoresHyp_Contrib Scores
Spib, Irf4, Irf8, Spi1, Irf2, Irf1, Elf5, Irf3, Prdm1, Spic,

Elf3, Etv6, Erg, Stat1, Zscan10, Etv4, Ehf, Etv2, Ets1, Stat2, Elk1,

Irf7, Elf4, Etv3, Elf2, Gabpa, Ets2, Fli1, XP_911724.4, Elf1, Zkscan5
metacluster_1/pattern_2 # seqlets: 2510 SequenceContrib ScoresHyp_Contrib Scores
Ctcf, Ctcfl
metacluster_1/pattern_3 # seqlets: 1557 SequenceContrib ScoresHyp_Contrib Scores
Elk4, Elk3, Etv1, Fev, Etv5, Spdef
metacluster_1/pattern_4 # seqlets: 1509 SequenceContrib ScoresHyp_Contrib Scores
Nfkb2, Nfkb1, Rela, Relb, Rel
metacluster_1/pattern_5 # seqlets: 1501 SequenceContrib ScoresHyp_Contrib Scores
Nfya, Nfyb, Nfyc, Foxi1, Pbx3
metacluster_1/pattern_6 # seqlets: 1279 SequenceContrib ScoresHyp_Contrib Scores
Nrf1
metacluster_1/pattern_7 # seqlets: 1202 SequenceContrib ScoresHyp_Contrib Scores
Taf1, Yy1, Zfx, Rfx1, Zfp42, Usf2, Mxi1
metacluster_1/pattern_8 # seqlets: 1025 SequenceContrib ScoresHyp_Contrib Scores
Batf3, Irf9, Irf5, Batf, Irf6
metacluster_1/pattern_9 # seqlets: 856 SequenceContrib ScoresHyp_Contrib Scores
Tfec, Usf1, Tfeb, Mitf, Arntl, Srebf1, Tfe3, Bhlhe40, Mlx, Clock,

Arnt, Npas2, Tcfl5, Creb3l2, Bhlhe41, Atf1, Hlf, Dbp, Arnt2, Xbp1, Mlxip
metacluster_1/pattern_10 # seqlets: 853 SequenceContrib ScoresHyp_Contrib Scores
Jdp2, Jund, Fosb, Junb, Atf3, Jun, Fosl2, Bach2
metacluster_1/pattern_11 # seqlets: 849 SequenceContrib ScoresHyp_Contrib Scores
Pou2f2, Pou5f1
metacluster_1/pattern_12 # seqlets: 795 SequenceContrib ScoresHyp_Contrib Scores
Creb1, Atf2, Atf7, Crem, Creb5, Nfil3, Fosl1, Tef
metacluster_1/pattern_13 # seqlets: 607 SequenceContrib ScoresHyp_Contrib Scores
Hes7, Hes1
metacluster_1/pattern_14 # seqlets: 569 SequenceContrib ScoresHyp_Contrib Scores
Zfp143, Thap11, Tbx2
metacluster_1/pattern_15 # seqlets: 358 SequenceContrib ScoresHyp_Contrib Scores
Mef2d, Mef2a, Mef2c
metacluster_1/pattern_16 # seqlets: 327 SequenceContrib ScoresHyp_Contrib Scores
Nfatc1
metacluster_1/pattern_17 # seqlets: 318 SequenceContrib ScoresHyp_Contrib Scores
Ascl2, Tcf3, Myf6, Myog, Ascl1, Myod1, Nhlh2, Tcf12, Tcf7l1, Ptf1a,

Nhlh1, Tal1, Myf5, Snai2, Bhlha15, Tcf4, Atoh1, Tgif1, Tcf21, Lyl1
metacluster_1/pattern_18 # seqlets: 302 SequenceContrib ScoresHyp_Contrib Scores
Zbtb33
metacluster_1/pattern_19 # seqlets: 297 SequenceContrib ScoresHyp_Contrib Scores
Runx1, Runx3, Runx2, Cbfb
metacluster_1/pattern_20 # seqlets: 176 SequenceContrib ScoresHyp_Contrib Scores
Atf4, Cebpg, Ddit3, Cebpb, Cebpd, Cebpa
metacluster_1/pattern_21 # seqlets: 124 SequenceContrib ScoresHyp_Contrib Scores
Rfx3, Rfx2, Rfx4, Rfx6, Rfx7
metacluster_1/pattern_22 # seqlets: 120 SequenceContrib ScoresHyp_Contrib Scores
Ebf1
Click here for Motifs by TF-MoDISco: #172
TF NamePattern(s)
Sp2
Pattern NameModiscoSignificance
metacluster_1/pattern_03.9940399999999996e-09
metacluster_1/pattern_73.22095e-05
metacluster_1/pattern_120.00245474
metacluster_1/pattern_130.0012567
Sp3
Pattern NameModiscoSignificance
metacluster_1/pattern_03.02491e-08
metacluster_1/pattern_70.000730759
metacluster_1/pattern_120.0451101
metacluster_1/pattern_130.00133495
Sp1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000685663
metacluster_1/pattern_76.308670000000001e-05
metacluster_1/pattern_120.00545076
metacluster_1/pattern_130.00676446
Klf3
Pattern NameModiscoSignificance
metacluster_1/pattern_07.300589999999999e-07
metacluster_1/pattern_70.0303232
metacluster_1/pattern_130.00114514
Sp4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00208703
metacluster_1/pattern_70.04549380000000001
metacluster_1/pattern_130.0105458
E2f4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0005811
metacluster_1/pattern_130.0102538
Zbtb17
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000596949
metacluster_1/pattern_70.0108356
Klf4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00236069
metacluster_1/pattern_130.0102538
Klf6
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000685663
metacluster_1/pattern_130.00551333
Sp5
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000685663
Egr1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0235038
metacluster_1/pattern_130.0454327
Klf5
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0009283389999999999
Klf7
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00164862
metacluster_1/pattern_130.00114514
Zfp281
Pattern NameModiscoSignificance
metacluster_1/pattern_00.054898199999999994
metacluster_1/pattern_130.011751600000000001
Wt1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00278957
metacluster_1/pattern_70.0286837
Klf8
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00280547
metacluster_1/pattern_130.0012567
Egr2
Pattern NameModiscoSignificance
metacluster_1/pattern_00.059091599999999994
metacluster_1/pattern_70.0303232
Klf12
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00313412
metacluster_1/pattern_130.00133495
Maz
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00504705
metacluster_1/pattern_70.0453815
Klf1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.05008869999999999
metacluster_1/pattern_130.00773411
E2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0170416
Klf15
Pattern NameModiscoSignificance
metacluster_1/pattern_00.019346099999999998
Srebf2
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0332286
metacluster_1/pattern_90.00324782
Sall4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.052342999999999994
Egr3
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0576031
Spib
Pattern NameModiscoSignificance
metacluster_1/pattern_18.21576e-14
metacluster_1/pattern_30.0525484
metacluster_1/pattern_80.0177795
Irf4
Pattern NameModiscoSignificance
metacluster_1/pattern_19.27981e-09
metacluster_1/pattern_80.00114667
Irf8
Pattern NameModiscoSignificance
metacluster_1/pattern_19.27981e-09
metacluster_1/pattern_30.042798699999999995
metacluster_1/pattern_80.00346147
Spi1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00070067
metacluster_1/pattern_30.0525484
Irf2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00049603
metacluster_1/pattern_80.00819611
Irf1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.000565133
metacluster_1/pattern_88.66608e-07
Elf5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00213704
metacluster_1/pattern_30.022971400000000003
Irf3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00279223
metacluster_1/pattern_80.0177795
Prdm1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00340062
metacluster_1/pattern_80.0381955
Spic
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00352511
Elf3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0425999
metacluster_1/pattern_30.0508634
Etv6
Pattern NameModiscoSignificance
metacluster_1/pattern_10.03893869999999999
metacluster_1/pattern_30.044824699999999995
Erg
Pattern NameModiscoSignificance
metacluster_1/pattern_10.04289
metacluster_1/pattern_30.000489435
Stat1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
metacluster_1/pattern_80.00300004
Zscan10
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
Etv4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
metacluster_1/pattern_30.008643999999999999
Ehf
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
metacluster_1/pattern_30.00788716
Etv2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
metacluster_1/pattern_30.00138762
Ets1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0421853
metacluster_1/pattern_30.00045371
Stat2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0222719
metacluster_1/pattern_80.00114667
Elk1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.04289
metacluster_1/pattern_30.000233937
Irf7
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0380759
metacluster_1/pattern_80.00114667
Elf4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.03879319999999999
metacluster_1/pattern_30.00638254
Etv3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.041257800000000004
metacluster_1/pattern_30.00138762
Elf2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.041257800000000004
metacluster_1/pattern_30.057701999999999996
Gabpa
Pattern NameModiscoSignificance
metacluster_1/pattern_10.043038
metacluster_1/pattern_30.00139001
Ets2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.04289
Fli1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.043038
metacluster_1/pattern_30.00045371
XP_911724.4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.04289
metacluster_1/pattern_30.00172554
Elf1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.051247100000000004
metacluster_1/pattern_33.72083e-05
Zkscan5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0565481
Ctcf
Pattern NameModiscoSignificance
metacluster_1/pattern_25.667669999999999e-14
Ctcfl
Pattern NameModiscoSignificance
metacluster_1/pattern_24.1683000000000003e-08
Elk4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000260447
Elk3
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00057132
Etv1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000447691
Fev
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000447691
Etv5
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00057132
Spdef
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0203947
Nfkb2
Pattern NameModiscoSignificance
metacluster_1/pattern_43.78149e-09
Nfkb1
Pattern NameModiscoSignificance
metacluster_1/pattern_41.1410699999999999e-05
Rela
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00020409
Relb
Pattern NameModiscoSignificance
metacluster_1/pattern_45.07645e-05
Rel
Pattern NameModiscoSignificance
metacluster_1/pattern_40.0197622
Nfya
Pattern NameModiscoSignificance
metacluster_1/pattern_51.69321e-11
Nfyb
Pattern NameModiscoSignificance
metacluster_1/pattern_53.30822e-11
Nfyc
Pattern NameModiscoSignificance
metacluster_1/pattern_54.41097e-11
Foxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_58.70397e-07
Pbx3
Pattern NameModiscoSignificance
metacluster_1/pattern_58.4872e-06
Nrf1
Pattern NameModiscoSignificance
metacluster_1/pattern_63.04712e-07
Taf1
Pattern NameModiscoSignificance
metacluster_1/pattern_76.72831e-06
Yy1
Pattern NameModiscoSignificance
metacluster_1/pattern_72.6074e-05
Zfx
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00201926
metacluster_1/pattern_120.0118675
metacluster_1/pattern_180.0132405
Rfx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00634401
metacluster_1/pattern_120.0183894
metacluster_1/pattern_217.22422e-08
Zfp42
Pattern NameModiscoSignificance
metacluster_1/pattern_70.012143600000000001
Usf2
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0303232
metacluster_1/pattern_90.00354032
metacluster_1/pattern_123.66492e-05
Mxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0303232
Batf3
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00114667
Irf9
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00639861
Irf5
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00674075
Batf
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0153143
metacluster_1/pattern_100.027666900000000005
Irf6
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0529094
Tfec
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00277565
Usf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00457223
metacluster_1/pattern_120.019362400000000002
Tfeb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0014354
Mitf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00223515
Arntl
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00699078
Srebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00205542
Tfe3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00324782
Bhlhe40
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00581451
Mlx
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0297086
Clock
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380423
Arnt
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380423
Npas2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00277565
Tcfl5
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00534271
Creb3l2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.058698099999999996
Bhlhe41
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0124616
Atf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.014413800000000001
metacluster_1/pattern_120.019362400000000002
Hlf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0374841
metacluster_1/pattern_120.0338279
Dbp
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380423
Arnt2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.045138
Xbp1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0465676
Mlxip
Pattern NameModiscoSignificance
metacluster_1/pattern_90.05833819999999999
Jdp2
Pattern NameModiscoSignificance
metacluster_1/pattern_100.018528599999999996
metacluster_1/pattern_120.000633968
metacluster_1/pattern_200.058266399999999996
Jund
Pattern NameModiscoSignificance
metacluster_1/pattern_100.0502179
Fosb
Pattern NameModiscoSignificance
metacluster_1/pattern_100.027666900000000005
Junb
Pattern NameModiscoSignificance
metacluster_1/pattern_100.027666900000000005
Atf3
Pattern NameModiscoSignificance
metacluster_1/pattern_100.027666900000000005
metacluster_1/pattern_120.00605121
Jun
Pattern NameModiscoSignificance
metacluster_1/pattern_100.05727919999999999
metacluster_1/pattern_120.0374848
Fosl2
Pattern NameModiscoSignificance
metacluster_1/pattern_100.05727919999999999
metacluster_1/pattern_120.010593700000000001
Bach2
Pattern NameModiscoSignificance
metacluster_1/pattern_100.05727919999999999
Pou2f2
Pattern NameModiscoSignificance
metacluster_1/pattern_110.012734
Pou5f1
Pattern NameModiscoSignificance
metacluster_1/pattern_110.046805400000000004
Creb1
Pattern NameModiscoSignificance
metacluster_1/pattern_120.00213786
Atf2
Pattern NameModiscoSignificance
metacluster_1/pattern_120.00131237
Atf7
Pattern NameModiscoSignificance
metacluster_1/pattern_120.00036904699999999995
Crem
Pattern NameModiscoSignificance
metacluster_1/pattern_120.010593700000000001
Creb5
Pattern NameModiscoSignificance
metacluster_1/pattern_120.00039835
Nfil3
Pattern NameModiscoSignificance
metacluster_1/pattern_120.038075300000000006
metacluster_1/pattern_200.030245799999999996
Fosl1
Pattern NameModiscoSignificance
metacluster_1/pattern_120.050432099999999994
Tef
Pattern NameModiscoSignificance
metacluster_1/pattern_120.056097900000000006
Hes7
Pattern NameModiscoSignificance
metacluster_1/pattern_130.029543599999999996
Hes1
Pattern NameModiscoSignificance
metacluster_1/pattern_130.031689499999999995
Zfp143
Pattern NameModiscoSignificance
metacluster_1/pattern_144.25965e-21
Thap11
Pattern NameModiscoSignificance
metacluster_1/pattern_144.25965e-21
Tbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_141.85768e-13
Mef2d
Pattern NameModiscoSignificance
metacluster_1/pattern_151.9107599999999996e-08
Mef2a
Pattern NameModiscoSignificance
metacluster_1/pattern_156.04974e-05
Mef2c
Pattern NameModiscoSignificance
metacluster_1/pattern_151.92664e-07
Nfatc1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0210784
Ascl2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.000591276
Tcf3
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00759331
Myf6
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0494373
Myog
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0101574
Ascl1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00270586
Myod1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00298954
Nhlh2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00298954
Tcf12
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0378463
Tcf7l1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00329604
Ptf1a
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0050721
Nhlh1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00447077
Tal1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00498526
Myf5
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00498526
Snai2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00544895
Bhlha15
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00544895
Tcf4
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00882521
Atoh1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.028972700000000004
Tgif1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0337171
Tcf21
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0461203
Lyl1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.057842399999999995
Zbtb33
Pattern NameModiscoSignificance
metacluster_1/pattern_186.02712e-06
Runx1
Pattern NameModiscoSignificance
metacluster_1/pattern_198.13084e-05
Runx3
Pattern NameModiscoSignificance
metacluster_1/pattern_198.13084e-05
Runx2
Pattern NameModiscoSignificance
metacluster_1/pattern_190.00548895
Cbfb
Pattern NameModiscoSignificance
metacluster_1/pattern_190.0008507660000000001
Atf4
Pattern NameModiscoSignificance
metacluster_1/pattern_204.82961e-05
Cebpg
Pattern NameModiscoSignificance
metacluster_1/pattern_201.79815e-07
Ddit3
Pattern NameModiscoSignificance
metacluster_1/pattern_200.00014289200000000001
Cebpb
Pattern NameModiscoSignificance
metacluster_1/pattern_200.058266399999999996
Cebpd
Pattern NameModiscoSignificance
metacluster_1/pattern_200.0363432
Cebpa
Pattern NameModiscoSignificance
metacluster_1/pattern_200.0363432
Rfx3
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00593284
Rfx2
Pattern NameModiscoSignificance
metacluster_1/pattern_214.80431e-08
Rfx4
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00013853799999999998
Rfx6
Pattern NameModiscoSignificance
metacluster_1/pattern_210.000750188
Rfx7
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00193925
Ebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_220.00222614
In [6]:
display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)
Number of CISBP TFs obtained by TF-MoDISco and Homer
Shared TFs between TF-MoDISco and Homer: #102
TF NameModiscoHomer
Spib
Pattern NameModiscoSignificance
metacluster_1/pattern_18.21576e-14
metacluster_1/pattern_30.0525484
metacluster_1/pattern_80.0177795
Pattern NameHomerSignificance
motif2.motif0.00039259099999999997
motif5.motif0.0187581
Foxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_58.70397e-07
Pattern NameHomerSignificance
motif9.motif4.73054e-06
Klf1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.05008869999999999
metacluster_1/pattern_130.00773411
Pattern NameHomerSignificance
motif3.motif0.03456
Spdef
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0203947
Pattern NameHomerSignificance
motif2.motif0.0257925
Klf4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00236069
metacluster_1/pattern_130.0102538
Pattern NameHomerSignificance
motif3.motif0.00172618
Klf6
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000685663
metacluster_1/pattern_130.00551333
Pattern NameHomerSignificance
motif3.motif0.00453227
Npas2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00277565
Pattern NameHomerSignificance
motif8.motif0.03922030000000001
motif21.motif0.0520702
Irf1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.000565133
metacluster_1/pattern_88.66608e-07
Pattern NameHomerSignificance
motif2.motif0.0130214
Klf8
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00280547
metacluster_1/pattern_130.0012567
Pattern NameHomerSignificance
motif3.motif0.00305937
Fev
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000447691
Pattern NameHomerSignificance
motif2.motif0.010356200000000001
Rela
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00020409
Pattern NameHomerSignificance
motif7.motif0.00023418400000000002
Etv5
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00057132
Pattern NameHomerSignificance
motif2.motif0.0007760760000000001
Tfe3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00324782
Pattern NameHomerSignificance
motif8.motif0.046205300000000005
motif21.motif0.0309438
Relb
Pattern NameModiscoSignificance
metacluster_1/pattern_45.07645e-05
Pattern NameHomerSignificance
motif7.motif0.000393901
Nfyc
Pattern NameModiscoSignificance
metacluster_1/pattern_54.41097e-11
Pattern NameHomerSignificance
motif9.motif1.5197399999999999e-06
Etv1
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000447691
Pattern NameHomerSignificance
motif2.motif0.0007922560000000001
Atf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.014413800000000001
metacluster_1/pattern_120.019362400000000002
Pattern NameHomerSignificance
motif8.motif0.00665257
Zfp42
Pattern NameModiscoSignificance
metacluster_1/pattern_70.012143600000000001
Pattern NameHomerSignificance
motif13.motif0.0393435
Bhlhe40
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00581451
Pattern NameHomerSignificance
motif8.motif0.0489319
motif21.motif0.0458961
Pou5f1
Pattern NameModiscoSignificance
metacluster_1/pattern_110.046805400000000004
Pattern NameHomerSignificance
motif10.motif0.026712299999999998
Irf4
Pattern NameModiscoSignificance
metacluster_1/pattern_19.27981e-09
metacluster_1/pattern_80.00114667
Pattern NameHomerSignificance
motif2.motif0.000494737
motif5.motif0.0187581
Fosl2
Pattern NameModiscoSignificance
metacluster_1/pattern_100.05727919999999999
metacluster_1/pattern_120.010593700000000001
Pattern NameHomerSignificance
motif8.motif0.038211
motif19.motif5.71256e-06
Mitf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00223515
Pattern NameHomerSignificance
motif8.motif0.03922030000000001
motif21.motif0.0309438
Yy1
Pattern NameModiscoSignificance
metacluster_1/pattern_72.6074e-05
Pattern NameHomerSignificance
motif13.motif7.660830000000002e-06
XP_911724.4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.04289
metacluster_1/pattern_30.00172554
Pattern NameHomerSignificance
motif2.motif0.000535379
Nfya
Pattern NameModiscoSignificance
metacluster_1/pattern_51.69321e-11
Pattern NameHomerSignificance
motif9.motif6.411790000000001e-07
Zbtb33
Pattern NameModiscoSignificance
metacluster_1/pattern_186.02712e-06
Pattern NameHomerSignificance
motif15.motif2.2641e-08
Junb
Pattern NameModiscoSignificance
metacluster_1/pattern_100.027666900000000005
Pattern NameHomerSignificance
motif19.motif0.0211872
Irf2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00049603
metacluster_1/pattern_80.00819611
Pattern NameHomerSignificance
motif2.motif0.00827653
motif5.motif0.0333112
Etv6
Pattern NameModiscoSignificance
metacluster_1/pattern_10.03893869999999999
metacluster_1/pattern_30.044824699999999995
Pattern NameHomerSignificance
motif2.motif0.0227418
Elf2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.041257800000000004
metacluster_1/pattern_30.057701999999999996
Pattern NameHomerSignificance
motif2.motif0.000975587
E2f4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0005811
metacluster_1/pattern_130.0102538
Pattern NameHomerSignificance
motif3.motif0.00172618
Nfyb
Pattern NameModiscoSignificance
metacluster_1/pattern_53.30822e-11
Pattern NameHomerSignificance
motif9.motif5.1878199999999996e-09
Srebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00205542
Pattern NameHomerSignificance
motif8.motif0.04846
motif21.motif0.055339599999999996
Elk1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.04289
metacluster_1/pattern_30.000233937
Pattern NameHomerSignificance
motif2.motif0.000494737
Prdm1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00340062
metacluster_1/pattern_80.0381955
Pattern NameHomerSignificance
motif2.motif0.00760631
Sp2
Pattern NameModiscoSignificance
metacluster_1/pattern_03.9940399999999996e-09
metacluster_1/pattern_73.22095e-05
metacluster_1/pattern_120.00245474
metacluster_1/pattern_130.0012567
Pattern NameHomerSignificance
motif3.motif0.00172618
Elk4
Pattern NameModiscoSignificance
metacluster_1/pattern_30.000260447
Pattern NameHomerSignificance
motif2.motif0.000535379
Xbp1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0465676
Pattern NameHomerSignificance
motif8.motif0.011999600000000001
Crem
Pattern NameModiscoSignificance
metacluster_1/pattern_120.010593700000000001
Pattern NameHomerSignificance
motif8.motif0.022859900000000002
Klf5
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0009283389999999999
Pattern NameHomerSignificance
motif3.motif0.059233
Elf4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.03879319999999999
metacluster_1/pattern_30.00638254
Pattern NameHomerSignificance
motif2.motif0.000827743
Usf2
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0303232
metacluster_1/pattern_90.00354032
metacluster_1/pattern_123.66492e-05
Pattern NameHomerSignificance
motif8.motif0.038211
motif21.motif0.0458961
Irf8
Pattern NameModiscoSignificance
metacluster_1/pattern_19.27981e-09
metacluster_1/pattern_30.042798699999999995
metacluster_1/pattern_80.00346147
Pattern NameHomerSignificance
motif2.motif0.000494737
motif5.motif0.0187581
Jdp2
Pattern NameModiscoSignificance
metacluster_1/pattern_100.018528599999999996
metacluster_1/pattern_120.000633968
metacluster_1/pattern_200.058266399999999996
Pattern NameHomerSignificance
motif8.motif0.0165394
motif19.motif4.6245299999999996e-05
Sp3
Pattern NameModiscoSignificance
metacluster_1/pattern_03.02491e-08
metacluster_1/pattern_70.000730759
metacluster_1/pattern_120.0451101
metacluster_1/pattern_130.00133495
Pattern NameHomerSignificance
motif3.motif0.0017977
Atf2
Pattern NameModiscoSignificance
metacluster_1/pattern_120.00131237
Pattern NameHomerSignificance
motif8.motif0.00933699
Creb5
Pattern NameModiscoSignificance
metacluster_1/pattern_120.00039835
Pattern NameHomerSignificance
motif8.motif0.00246214
Irf7
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0380759
metacluster_1/pattern_80.00114667
Pattern NameHomerSignificance
motif5.motif0.0438124
Fosb
Pattern NameModiscoSignificance
metacluster_1/pattern_100.027666900000000005
Pattern NameHomerSignificance
motif19.motif2.68538e-06
Elf5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00213704
metacluster_1/pattern_30.022971400000000003
Pattern NameHomerSignificance
motif2.motif0.011157700000000001
Sp1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000685663
metacluster_1/pattern_76.308670000000001e-05
metacluster_1/pattern_120.00545076
metacluster_1/pattern_130.00676446
Pattern NameHomerSignificance
motif3.motif0.00919423
Nfkb2
Pattern NameModiscoSignificance
metacluster_1/pattern_43.78149e-09
Pattern NameHomerSignificance
motif7.motif0.00023418400000000002
Zfp143
Pattern NameModiscoSignificance
metacluster_1/pattern_144.25965e-21
Pattern NameHomerSignificance
motif6.motif1.26637e-07
Elf3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0425999
metacluster_1/pattern_30.0508634
Pattern NameHomerSignificance
motif2.motif0.014823
Fosl1
Pattern NameModiscoSignificance
metacluster_1/pattern_120.050432099999999994
Pattern NameHomerSignificance
motif19.motif0.0239875
Irf9
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00639861
Pattern NameHomerSignificance
motif2.motif0.0384793
motif5.motif0.0187581
Spic
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00352511
Pattern NameHomerSignificance
motif2.motif0.000700717
Spi1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00070067
metacluster_1/pattern_30.0525484
Pattern NameHomerSignificance
motif2.motif0.000515265
Elf1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.051247100000000004
metacluster_1/pattern_33.72083e-05
Pattern NameHomerSignificance
motif2.motif0.000494737
Fli1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.043038
metacluster_1/pattern_30.00045371
Pattern NameHomerSignificance
motif2.motif0.00118401
Tbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_141.85768e-13
Pattern NameHomerSignificance
motif6.motif4.33194e-06
Nfkb1
Pattern NameModiscoSignificance
metacluster_1/pattern_41.1410699999999999e-05
Pattern NameHomerSignificance
motif7.motif3.18642e-05
Atf3
Pattern NameModiscoSignificance
metacluster_1/pattern_100.027666900000000005
metacluster_1/pattern_120.00605121
Pattern NameHomerSignificance
motif8.motif0.0360846
motif19.motif2.68538e-06
Irf5
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00674075
Pattern NameHomerSignificance
motif5.motif0.0488584
Pbx3
Pattern NameModiscoSignificance
metacluster_1/pattern_58.4872e-06
Pattern NameHomerSignificance
motif9.motif0.000102215
Jun
Pattern NameModiscoSignificance
metacluster_1/pattern_100.05727919999999999
metacluster_1/pattern_120.0374848
Pattern NameHomerSignificance
motif8.motif0.038211
motif19.motif0.040008499999999995
Elk3
Pattern NameModiscoSignificance
metacluster_1/pattern_30.00057132
Pattern NameHomerSignificance
motif2.motif0.000515265
Thap11
Pattern NameModiscoSignificance
metacluster_1/pattern_144.25965e-21
Pattern NameHomerSignificance
motif6.motif4.65054e-07
Gabpa
Pattern NameModiscoSignificance
metacluster_1/pattern_10.043038
metacluster_1/pattern_30.00139001
Pattern NameHomerSignificance
motif2.motif0.00449843
Nfatc1
Pattern NameModiscoSignificance
metacluster_1/pattern_160.0210784
Pattern NameHomerSignificance
motif19.motif0.050415499999999995
Arntl
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00699078
Pattern NameHomerSignificance
motif8.motif0.0565494
motif21.motif0.0309438
Ctcf
Pattern NameModiscoSignificance
metacluster_1/pattern_25.667669999999999e-14
Pattern NameHomerSignificance
motif1.motif7.862800000000001e-05
Ets1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0421853
metacluster_1/pattern_30.00045371
Pattern NameHomerSignificance
motif2.motif0.000494737
Rel
Pattern NameModiscoSignificance
metacluster_1/pattern_40.0197622
Pattern NameHomerSignificance
motif7.motif0.0174286
Nrf1
Pattern NameModiscoSignificance
metacluster_1/pattern_63.04712e-07
Pattern NameHomerSignificance
motif12.motif0.000586865
Creb1
Pattern NameModiscoSignificance
metacluster_1/pattern_120.00213786
Pattern NameHomerSignificance
motif8.motif0.00286957
Jund
Pattern NameModiscoSignificance
metacluster_1/pattern_100.0502179
Pattern NameHomerSignificance
motif19.motif0.00599157
Klf7
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00164862
metacluster_1/pattern_130.00114514
Pattern NameHomerSignificance
motif3.motif0.00172618
Atf7
Pattern NameModiscoSignificance
metacluster_1/pattern_120.00036904699999999995
Pattern NameHomerSignificance
motif8.motif0.00656214
Etv2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
metacluster_1/pattern_30.00138762
Pattern NameHomerSignificance
motif2.motif0.00173034
Etv4
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
metacluster_1/pattern_30.008643999999999999
Pattern NameHomerSignificance
motif2.motif0.00827653
Egr1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0235038
metacluster_1/pattern_130.0454327
Pattern NameHomerSignificance
motif3.motif0.0540116
Pou2f2
Pattern NameModiscoSignificance
metacluster_1/pattern_110.012734
Pattern NameHomerSignificance
motif10.motif0.0157248
Clock
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380423
Pattern NameHomerSignificance
motif8.motif0.038211
motif21.motif0.0549097
Usf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00457223
metacluster_1/pattern_120.019362400000000002
Pattern NameHomerSignificance
motif8.motif0.0489319
motif21.motif0.0245866
Ctcfl
Pattern NameModiscoSignificance
metacluster_1/pattern_24.1683000000000003e-08
Pattern NameHomerSignificance
motif1.motif0.00035999199999999995
Klf12
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00313412
metacluster_1/pattern_130.00133495
Pattern NameHomerSignificance
motif3.motif0.0507748
Zfx
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00201926
metacluster_1/pattern_120.0118675
metacluster_1/pattern_180.0132405
Pattern NameHomerSignificance
motif3.motif0.0168823
Tfec
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00277565
Pattern NameHomerSignificance
motif8.motif0.0489319
motif21.motif0.0173258
Tfeb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0014354
Pattern NameHomerSignificance
motif8.motif0.0251287
motif21.motif0.0309438
Irf3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.00279223
metacluster_1/pattern_80.0177795
Pattern NameHomerSignificance
motif2.motif0.012573
motif5.motif0.019278
Sp4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00208703
metacluster_1/pattern_70.04549380000000001
metacluster_1/pattern_130.0105458
Pattern NameHomerSignificance
motif3.motif0.0361108
Ehf
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
metacluster_1/pattern_30.00788716
Pattern NameHomerSignificance
motif2.motif0.00762334
Taf1
Pattern NameModiscoSignificance
metacluster_1/pattern_76.72831e-06
Pattern NameHomerSignificance
motif13.motif0.000198732
Klf3
Pattern NameModiscoSignificance
metacluster_1/pattern_07.300589999999999e-07
metacluster_1/pattern_70.0303232
metacluster_1/pattern_130.00114514
Pattern NameHomerSignificance
motif3.motif0.00172618
Etv3
Pattern NameModiscoSignificance
metacluster_1/pattern_10.041257800000000004
metacluster_1/pattern_30.00138762
Pattern NameHomerSignificance
motif2.motif0.000515265
Erg
Pattern NameModiscoSignificance
metacluster_1/pattern_10.04289
metacluster_1/pattern_30.000489435
Pattern NameHomerSignificance
motif2.motif0.000512409
Creb3l2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.058698099999999996
Pattern NameHomerSignificance
motif8.motif0.038211
Mlx
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0297086
Pattern NameHomerSignificance
motif8.motif0.05479880000000001
motif21.motif0.0309438
Bach2
Pattern NameModiscoSignificance
metacluster_1/pattern_100.05727919999999999
Pattern NameHomerSignificance
motif19.motif0.00221765
Batf
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0153143
metacluster_1/pattern_100.027666900000000005
Pattern NameHomerSignificance
motif19.motif0.00276957
Unique TF-MoDISco TFs: #70
TF NameModiscoHomer
Arnt2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.045138
Absent
Mxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0303232
Absent
Runx3
Pattern NameModiscoSignificance
metacluster_1/pattern_198.13084e-05
Absent
Klf15
Pattern NameModiscoSignificance
metacluster_1/pattern_00.019346099999999998
Absent
Sall4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.052342999999999994
Absent
Tcf12
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0378463
Absent
Bhlhe41
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0124616
Absent
Myf6
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0494373
Absent
Mef2c
Pattern NameModiscoSignificance
metacluster_1/pattern_151.92664e-07
Absent
Srebf2
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0332286
metacluster_1/pattern_90.00324782
Absent
Irf6
Pattern NameModiscoSignificance
metacluster_1/pattern_80.0529094
Absent
Batf3
Pattern NameModiscoSignificance
metacluster_1/pattern_80.00114667
Absent
Lyl1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.057842399999999995
Absent
Tgif1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0337171
Absent
Zfp281
Pattern NameModiscoSignificance
metacluster_1/pattern_00.054898199999999994
metacluster_1/pattern_130.011751600000000001
Absent
Rfx2
Pattern NameModiscoSignificance
metacluster_1/pattern_214.80431e-08
Absent
Tcf21
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0461203
Absent
Rfx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00634401
metacluster_1/pattern_120.0183894
metacluster_1/pattern_217.22422e-08
Absent
Rfx4
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00013853799999999998
Absent
Cebpb
Pattern NameModiscoSignificance
metacluster_1/pattern_200.058266399999999996
Absent
Zscan10
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
Absent
Ptf1a
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0050721
Absent
Ascl1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00270586
Absent
Zkscan5
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0565481
Absent
Tal1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00498526
Absent
Mlxip
Pattern NameModiscoSignificance
metacluster_1/pattern_90.05833819999999999
Absent
Cebpg
Pattern NameModiscoSignificance
metacluster_1/pattern_201.79815e-07
Absent
Runx2
Pattern NameModiscoSignificance
metacluster_1/pattern_190.00548895
Absent
Hes7
Pattern NameModiscoSignificance
metacluster_1/pattern_130.029543599999999996
Absent
Cbfb
Pattern NameModiscoSignificance
metacluster_1/pattern_190.0008507660000000001
Absent
Nfil3
Pattern NameModiscoSignificance
metacluster_1/pattern_120.038075300000000006
metacluster_1/pattern_200.030245799999999996
Absent
Ets2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.04289
Absent
Egr3
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0576031
Absent
Cebpa
Pattern NameModiscoSignificance
metacluster_1/pattern_200.0363432
Absent
Tef
Pattern NameModiscoSignificance
metacluster_1/pattern_120.056097900000000006
Absent
Hes1
Pattern NameModiscoSignificance
metacluster_1/pattern_130.031689499999999995
Absent
Atf4
Pattern NameModiscoSignificance
metacluster_1/pattern_204.82961e-05
Absent
Nhlh2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00298954
Absent
Ebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_220.00222614
Absent
Arnt
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380423
Absent
Bhlha15
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00544895
Absent
Maz
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00504705
metacluster_1/pattern_70.0453815
Absent
E2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0170416
Absent
Tcf4
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00882521
Absent
Ddit3
Pattern NameModiscoSignificance
metacluster_1/pattern_200.00014289200000000001
Absent
Runx1
Pattern NameModiscoSignificance
metacluster_1/pattern_198.13084e-05
Absent
Ascl2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.000591276
Absent
Hlf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0374841
metacluster_1/pattern_120.0338279
Absent
Stat2
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0222719
metacluster_1/pattern_80.00114667
Absent
Nhlh1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00447077
Absent
Atoh1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.028972700000000004
Absent
Tcf7l1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00329604
Absent
Myog
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0101574
Absent
Wt1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00278957
metacluster_1/pattern_70.0286837
Absent
Mef2a
Pattern NameModiscoSignificance
metacluster_1/pattern_156.04974e-05
Absent
Egr2
Pattern NameModiscoSignificance
metacluster_1/pattern_00.059091599999999994
metacluster_1/pattern_70.0303232
Absent
Dbp
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380423
Absent
Tcf3
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00759331
Absent
Rfx7
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00193925
Absent
Zbtb17
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000596949
metacluster_1/pattern_70.0108356
Absent
Sp5
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000685663
Absent
Myod1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00298954
Absent
Rfx3
Pattern NameModiscoSignificance
metacluster_1/pattern_210.00593284
Absent
Myf5
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00498526
Absent
Tcfl5
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00534271
Absent
Snai2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.00544895
Absent
Mef2d
Pattern NameModiscoSignificance
metacluster_1/pattern_151.9107599999999996e-08
Absent
Stat1
Pattern NameModiscoSignificance
metacluster_1/pattern_10.0180162
metacluster_1/pattern_80.00300004
Absent
Cebpd
Pattern NameModiscoSignificance
metacluster_1/pattern_200.0363432
Absent
Rfx6
Pattern NameModiscoSignificance
metacluster_1/pattern_210.000750188
Absent
Unique Homer TFs: #12
TF NameModiscoHomer
MafbAbsent
Pattern NameHomerSignificance
motif19.motif0.0130711
FosAbsent
Pattern NameHomerSignificance
motif19.motif4.92705e-06
Pou2f1Absent
Pattern NameHomerSignificance
motif10.motif0.0475029
NanogAbsent
Pattern NameHomerSignificance
motif10.motif0.026712299999999998
MafaAbsent
Pattern NameHomerSignificance
motif19.motif0.00609182
Bach1Absent
Pattern NameHomerSignificance
motif19.motif0.011487899999999999
Nfe2l2Absent
Pattern NameHomerSignificance
motif19.motif0.010743
MafAbsent
Pattern NameHomerSignificance
motif19.motif0.0226155
MafgAbsent
Pattern NameHomerSignificance
motif19.motif0.0130711
MafkAbsent
Pattern NameHomerSignificance
motif19.motif0.008695999999999999
Nfe2Absent
Pattern NameHomerSignificance
motif19.motif0.00580271
MaffAbsent
Pattern NameHomerSignificance
motif19.motif0.019869099999999997