# Parameters
data_name = "aB_LPS;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_13-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_13-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:41:46,047 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	aB LPS
Cell Group	B cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	55959	36089	13.6735	46341024	4565695	0.0986	4669732	0.1008	14893139	0.3215

Modelling Metadata

Metric	Value
auPRC	0.6772
Calibrated Recall at 50% FDR	0.168
Number of Positive Examples in Test Data	45734
Number of Negative Examples in Test Data	8025117
Imbalance Ratio in Test Data	0.0057
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #19

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 5161 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 5014 SequenceContrib ScoresHyp_Contrib Scores	Spib, Spi1, Irf8, Irf4, Ets1, Etv6, Erg, Gabpa, Elk1, Etv2, Spic, Elf1, Etv3, Ehf, Elf3, Fli1, XP_911724.4, Etv4, Elf4, Elk4, Elk3, Elf2, Etv5, Etv1, Prdm1, Irf3, Elf5, Irf2, Irf1, Fev, Spdef
metacluster_1/pattern_2 # seqlets: 3685 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp3, Sp4, Sp1, Klf3, Klf4, E2f4, Klf6, Egr1, Klf7, Sp5, Zbtb17, Klf8, Klf5, Klf12, Egr2, Wt1, Klf1, Zfp281, Maz, E2f1, Klf15, Egr3, Srebf2, Zfp740
metacluster_1/pattern_3 # seqlets: 1960 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_4 # seqlets: 1878 SequenceContrib ScoresHyp_Contrib Scores	Nrf1, Zfx
metacluster_1/pattern_5 # seqlets: 1366 SequenceContrib ScoresHyp_Contrib Scores	Yy1, Taf1, Zfp42, Rfx1, Mxi1
metacluster_1/pattern_6 # seqlets: 1036 SequenceContrib ScoresHyp_Contrib Scores	Stat2, Irf7, Zscan10, Stat1, Irf9
metacluster_1/pattern_7 # seqlets: 973 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_8 # seqlets: 797 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Usf2, Atf2, Jdp2, Atf7, Atf1, Crem, Creb5, Atf3, Fosl2, Usf1, Jun, Hlf, Fosl1, Nfil3, Rxrb, Tef
metacluster_1/pattern_9 # seqlets: 480 SequenceContrib ScoresHyp_Contrib Scores	Tfe3, Tfeb, Arntl, Tfec, Mitf, Clock, Bhlhe40, Srebf1, Arnt, Mlx, Npas2, Tcfl5, Bhlhe41, Creb3l2, Mycn, Max, Rxrg, Myc
metacluster_1/pattern_10 # seqlets: 422 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2
metacluster_1/pattern_11 # seqlets: 349 SequenceContrib ScoresHyp_Contrib Scores	Fos, Jund, Batf, Fosb, Junb, Bach2, Nfe2, Nfe2l2, Bach1, Mafk, Mafa, Mafb, Mafg, Maff, Maf
metacluster_1/pattern_12 # seqlets: 221 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_13 # seqlets: 190 SequenceContrib ScoresHyp_Contrib Scores	Nfkb1, Rela, Relb, Nfkb2, Rel
metacluster_1/pattern_14 # seqlets: 161 SequenceContrib ScoresHyp_Contrib Scores	Rfx2, Rfx3, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_15 # seqlets: 107 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_16 # seqlets: 101 SequenceContrib ScoresHyp_Contrib Scores	Ebf1, Prdm16
metacluster_1/pattern_17 # seqlets: 79 SequenceContrib ScoresHyp_Contrib Scores	Mef2d, Mef2a, Mef2c
metacluster_1/pattern_18 # seqlets: 72 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #145

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 4.52188e-13 metacluster_1/pattern_14 0.019318400000000003
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 7.36031e-08
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 8.581619999999999e-07 metacluster_1/pattern_6 4.6927100000000005e-07
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00029711799999999997 metacluster_1/pattern_6 0.0043186000000000006
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 5.12594e-05 metacluster_1/pattern_6 2.42169e-13
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 5.86255e-05 metacluster_1/pattern_6 0.0257478
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000287689
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00202921
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00029711799999999997
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00206096
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000289767
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00019558099999999998
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000303585 metacluster_1/pattern_6 0.0269061
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000289767
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000289767
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00211231
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00546408
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0014976
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000373089
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00109868
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000452635
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000676143
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000873813
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00503099
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0009373119999999999
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00118397
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00129449 metacluster_1/pattern_6 0.0106874
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00206099 metacluster_1/pattern_6 0.00335088
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00510603
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00266291 metacluster_1/pattern_6 0.0277231
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00463559 metacluster_1/pattern_6 4.08184e-05
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00947563
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.011977400000000001
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.74506e-08 metacluster_1/pattern_5 0.0579114 metacluster_1/pattern_8 0.00670178 metacluster_1/pattern_9 0.0249495 metacluster_1/pattern_14 0.00010439200000000001
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.7843800000000003e-07 metacluster_1/pattern_5 0.0564028 metacluster_1/pattern_14 0.00115363
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0011937999999999999
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000347592 metacluster_1/pattern_8 0.0234554 metacluster_1/pattern_14 0.00036118900000000004
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 5.16084e-07
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0009016810000000001
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000347592
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000595334
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0127809
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000698033
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0008950680000000001 metacluster_1/pattern_14 0.0444123
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0008950680000000001 metacluster_1/pattern_14 0.0372437
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00108118
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00112944
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00112944
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0348614
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00237952 metacluster_1/pattern_14 0.02615
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0176273
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00510968
Maz	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0101992
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.021005700000000002
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0274089 metacluster_1/pattern_14 0.0584347
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.038108300000000005
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.050438199999999996 metacluster_1/pattern_9 0.00433468
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.050438199999999996
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 3.29772e-10
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 5.26455e-06
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 5.26455e-06
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 5.26455e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 9.57188e-05
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 2.3915199999999997e-07
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0496577 metacluster_1/pattern_8 0.0110316 metacluster_1/pattern_9 0.0230801 metacluster_1/pattern_14 0.00169359
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.8070400000000002e-06
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.8070400000000002e-06
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0263144
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0579114 metacluster_1/pattern_8 0.018947400000000003 metacluster_1/pattern_14 7.10015e-10 metacluster_1/pattern_15 0.009836399999999999
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0599947 metacluster_1/pattern_9 0.00376182
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.006857899999999999
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00827274
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00879301
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.016779
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0191863
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_7 2.64438e-23
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_7 6.2699e-22
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_7 4.47152e-14
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00173594 metacluster_1/pattern_9 0.033969
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_8 8.216040000000001e-05 metacluster_1/pattern_9 0.0132664
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00100785 metacluster_1/pattern_9 0.023859599999999998
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000336156 metacluster_1/pattern_9 0.0575856 metacluster_1/pattern_11 7.61672e-05
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00032057900000000004 metacluster_1/pattern_9 0.0147732
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.014066200000000001 metacluster_1/pattern_9 0.0302808
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00548929
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00102718
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00303227 metacluster_1/pattern_11 2.79975e-05
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00722354 metacluster_1/pattern_11 5.773480000000001e-06
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.017734299999999998 metacluster_1/pattern_9 0.0147732
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0205123 metacluster_1/pattern_11 0.052644500000000004
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0224365
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0232333 metacluster_1/pattern_11 0.037157199999999994
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.026734699999999997
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0330006
Tef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.047769099999999995
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0032341
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000591916
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_9 0.010312200000000002
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00368969
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00161281
Clock	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0006178630000000001
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00874067
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0570211
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0426028
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0163645
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00368969
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0113485
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0174873
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0244475
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_9 0.033969
Max	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0402931
Rxrg	Pattern Name Modisco Significance metacluster_1/pattern_9 0.041020999999999995
Myc	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0575856
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.006988600000000001
Fos	Pattern Name Modisco Significance metacluster_1/pattern_11 4.88925e-06
Jund	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00852195
Batf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00669665
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_11 1.7368499999999998e-05
Junb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0462094
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_11 7.61672e-05
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000175938
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00018904099999999998
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00025983
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00432366
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00809606
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0114259
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_11 0.011947200000000002
Maff	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0158607
Maf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.018482
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_12 4.5438e-05
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_13 9.32012e-05
Rela	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00017994200000000002
Relb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00017994200000000002
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00017994200000000002
Rel	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00128815
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_14 1.5087799999999998e-09 metacluster_1/pattern_15 0.017316400000000003
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00355378 metacluster_1/pattern_15 0.00151811
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00036118900000000004 metacluster_1/pattern_15 0.017316400000000003
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00226825 metacluster_1/pattern_15 0.00746146
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00554573 metacluster_1/pattern_15 0.00151811
Ebf1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00968029
Prdm16	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0183117
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_17 4.2770399999999995e-09
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000307572
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_17 2.64104e-08

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #63

TF Name	Modisco	Homer
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00109868	Pattern Name Homer Significance motif3.motif 0.00199287
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 5.26455e-06	Pattern Name Homer Significance motif4.motif 0.00148169
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00112944	Pattern Name Homer Significance motif2.motif 0.00907928
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000289767	Pattern Name Homer Significance motif3.motif 0.00056847
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0127809	Pattern Name Homer Significance motif2.motif 0.0100604
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.74506e-08 metacluster_1/pattern_5 0.0579114 metacluster_1/pattern_8 0.00670178 metacluster_1/pattern_9 0.0249495 metacluster_1/pattern_14 0.00010439200000000001	Pattern Name Homer Significance motif2.motif 7.66404e-05
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_12 4.5438e-05	Pattern Name Homer Significance motif9.motif 0.00106941
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 4.52188e-13 metacluster_1/pattern_14 0.019318400000000003	Pattern Name Homer Significance motif1.motif 1.23463e-06
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_13 9.32012e-05	Pattern Name Homer Significance motif15.motif 0.021300799999999998
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00202921	Pattern Name Homer Significance motif3.motif 0.00457979
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000676143	Pattern Name Homer Significance motif3.motif 0.000365574
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0009016810000000001	Pattern Name Homer Significance motif2.motif 0.0318201
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0009373119999999999	Pattern Name Homer Significance motif3.motif 1.5838699999999998e-05
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00510603	Pattern Name Homer Significance motif3.motif 0.00137435
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.011977400000000001	Pattern Name Homer Significance motif3.motif 0.011654000000000001
Rela	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00017994200000000002	Pattern Name Homer Significance motif14.motif 0.029232099999999997 motif15.motif 0.0263385
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 7.36031e-08	Pattern Name Homer Significance motif1.motif 0.000150441
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00019558099999999998	Pattern Name Homer Significance motif3.motif 0.0029376
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00206096	Pattern Name Homer Significance motif3.motif 0.0050605
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00108118	Pattern Name Homer Significance motif2.motif 0.000424515
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00947563	Pattern Name Homer Significance motif3.motif 0.0132854
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 9.57188e-05	Pattern Name Homer Significance motif4.motif 0.000415985
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00112944	Pattern Name Homer Significance motif2.motif 0.00687749
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000347592 metacluster_1/pattern_8 0.0234554 metacluster_1/pattern_14 0.00036118900000000004	Pattern Name Homer Significance motif2.motif 0.00808557 motif14.motif 0.0296094
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000873813	Pattern Name Homer Significance motif3.motif 0.000478935
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00237952 metacluster_1/pattern_14 0.02615	Pattern Name Homer Significance motif14.motif 0.029232099999999997
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000347592	Pattern Name Homer Significance motif2.motif 0.00061806
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000595334	Pattern Name Homer Significance motif2.motif 0.0007423880000000001
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 5.12594e-05 metacluster_1/pattern_6 2.42169e-13	Pattern Name Homer Significance motif3.motif 0.032167799999999996
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.7843800000000003e-07 metacluster_1/pattern_5 0.0564028 metacluster_1/pattern_14 0.00115363	Pattern Name Homer Significance motif2.motif 9.77634e-05
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.021005700000000002	Pattern Name Homer Significance motif2.motif 0.05904349999999999
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00510968	Pattern Name Homer Significance motif14.motif 0.0456068
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00503099	Pattern Name Homer Significance motif3.motif 0.0144172
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 5.26455e-06	Pattern Name Homer Significance motif4.motif 2.80642e-06
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00017994200000000002	Pattern Name Homer Significance motif15.motif 0.021300799999999998
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000287689	Pattern Name Homer Significance motif3.motif 0.000672729
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0011937999999999999	Pattern Name Homer Significance motif2.motif 0.024109000000000002
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000373089	Pattern Name Homer Significance motif3.motif 4.81125e-05
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00211231	Pattern Name Homer Significance motif3.motif 0.0144172
Relb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00017994200000000002	Pattern Name Homer Significance motif15.motif 0.0496454
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_7 4.47152e-14	Pattern Name Homer Significance motif5.motif 5.2806e-05
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_7 6.2699e-22	Pattern Name Homer Significance motif5.motif 4.41944e-07
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 8.581619999999999e-07 metacluster_1/pattern_6 4.6927100000000005e-07	Pattern Name Homer Significance motif3.motif 0.0132854
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00118397	Pattern Name Homer Significance motif3.motif 7.49369e-05
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00029711799999999997	Pattern Name Homer Significance motif3.motif 0.00059431
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0014976	Pattern Name Homer Significance motif3.motif 0.00111217
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_7 2.64438e-23	Pattern Name Homer Significance motif5.motif 4.41944e-07
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000289767	Pattern Name Homer Significance motif3.motif 0.000478935
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0348614	Pattern Name Homer Significance motif2.motif 0.044981
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000698033	Pattern Name Homer Significance motif2.motif 0.00016804099999999999
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0176273	Pattern Name Homer Significance motif2.motif 0.0212485
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000303585 metacluster_1/pattern_6 0.0269061	Pattern Name Homer Significance motif3.motif 0.00348613
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00173594 metacluster_1/pattern_9 0.033969	Pattern Name Homer Significance motif7.motif 0.00404498
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 3.29772e-10	Pattern Name Homer Significance motif4.motif 1.08247e-07
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00029711799999999997 metacluster_1/pattern_6 0.0043186000000000006	Pattern Name Homer Significance motif3.motif 0.026806
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000289767	Pattern Name Homer Significance motif3.motif 4.60931e-05
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000452635	Pattern Name Homer Significance motif3.motif 9.40234e-05
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 5.86255e-05 metacluster_1/pattern_6 0.0257478	Pattern Name Homer Significance motif3.motif 0.0286072
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 5.26455e-06	Pattern Name Homer Significance motif4.motif 5.60247e-06
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0008950680000000001 metacluster_1/pattern_14 0.0444123	Pattern Name Homer Significance motif14.motif 0.029232099999999997
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 5.16084e-07	Pattern Name Homer Significance motif2.motif 7.66404e-05
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 2.3915199999999997e-07	Pattern Name Homer Significance motif6.motif 0.00143264
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00546408	Pattern Name Homer Significance motif3.motif 0.0267191

Unique TF-MoDISco TFs: #82

TF Name	Modisco	Homer
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00368969	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_11 1.7368499999999998e-05	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0570211	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0575856	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00809606	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00303227 metacluster_1/pattern_11 2.79975e-05	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0113485	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_8 8.216040000000001e-05 metacluster_1/pattern_9 0.0132664	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00032057900000000004 metacluster_1/pattern_9 0.0147732	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0426028	Absent
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00266291 metacluster_1/pattern_6 0.0277231	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0174873	Absent
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.014066200000000001 metacluster_1/pattern_9 0.0302808	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0402931	Absent
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0274089 metacluster_1/pattern_14 0.0584347	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_14 1.5087799999999998e-09 metacluster_1/pattern_15 0.017316400000000003	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000591916	Absent
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.8070400000000002e-06	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00100785 metacluster_1/pattern_9 0.023859599999999998	Absent
Rel	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00128815	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00548929	Absent
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_11 0.011947200000000002	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00874067	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000175938	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00102718	Absent
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00129449 metacluster_1/pattern_6 0.0106874	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_11 7.61672e-05	Absent
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_17 4.2770399999999995e-09	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0006178630000000001	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00018904099999999998	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_9 0.033969	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0224365	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.047769099999999995	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0163645	Absent
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0008950680000000001 metacluster_1/pattern_14 0.0372437	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_9 0.010312200000000002	Absent
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0330006	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.006857899999999999	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00226825 metacluster_1/pattern_15 0.00746146	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00852195	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0032341	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00368969	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0244475	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00669665	Absent
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000307572	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.016779	Absent
Ebf1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00968029	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.050438199999999996 metacluster_1/pattern_9 0.00433468	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0462094	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.026734699999999997	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0205123 metacluster_1/pattern_11 0.052644500000000004	Absent
Prdm16	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0183117	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00722354 metacluster_1/pattern_11 5.773480000000001e-06	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.050438199999999996	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0101992	Absent
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00827274	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0232333 metacluster_1/pattern_11 0.037157199999999994	Absent
Maff	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0158607	Absent
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0263144	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0599947 metacluster_1/pattern_9 0.00376182	Absent
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00879301	Absent
Rxrg	Pattern Name Modisco Significance metacluster_1/pattern_9 0.041020999999999995	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0496577 metacluster_1/pattern_8 0.0110316 metacluster_1/pattern_9 0.0230801 metacluster_1/pattern_14 0.00169359	Absent
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0114259	Absent
Maf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.018482	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0579114 metacluster_1/pattern_8 0.018947400000000003 metacluster_1/pattern_14 7.10015e-10 metacluster_1/pattern_15 0.009836399999999999	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.017734299999999998 metacluster_1/pattern_9 0.0147732	Absent
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.8070400000000002e-06	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_11 4.88925e-06	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00161281	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00432366	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.038108300000000005	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00355378 metacluster_1/pattern_15 0.00151811	Absent
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00463559 metacluster_1/pattern_6 4.08184e-05	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.006988600000000001	Absent
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_17 2.64104e-08	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00206099 metacluster_1/pattern_6 0.00335088	Absent
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0191863	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00554573 metacluster_1/pattern_15 0.00151811	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00036118900000000004 metacluster_1/pattern_15 0.017316400000000003	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00025983	Absent
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000336156 metacluster_1/pattern_9 0.0575856 metacluster_1/pattern_11 7.61672e-05	Absent

Unique Homer TFs: #6

TF Name	Modisco	Homer
Irf5	Absent	Pattern Name Homer Significance motif3.motif 0.0598497
Zic2	Absent	Pattern Name Homer Significance motif1.motif 0.054056799999999995
Snai1	Absent	Pattern Name Homer Significance motif1.motif 0.054056799999999995
Sall4	Absent	Pattern Name Homer Significance motif14.motif 0.0296094
Zbtb1	Absent	Pattern Name Homer Significance motif2.motif 0.0353518
Zic3	Absent	Pattern Name Homer Significance motif1.motif 0.054056799999999995