In [1]:
# Parameters
data_name = "Olig2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:26:25,491 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Olig2: Motif: M09477_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Olig2: #37

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0169932

Pattern: motif5.motif

Significance: 0.0009455010000000001

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00561416

/

Pattern: metacluster_0/pattern_7

Significance: 0.046842699999999994

Pattern: motif12.motif

Significance: 0.0246839

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0171961

Pattern: motif6.motif

Significance: 0.0222502

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.020716299999999997

Pattern: motif5.motif

Significance: 0.00139642

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0233704

Pattern: motif7.motif

Significance: 0.0532775

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 6.90596e-05

Pattern: motif15.motif

Significance: 0.0336151

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0345445

Pattern: motif10.motif

Significance: 0.026440699999999998

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0368208

Pattern: motif9.motif

Significance: 0.024478200000000002

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.013532299999999997

/

Pattern: metacluster_1/pattern_18

Significance: 0.020916

Pattern: motif11.motif

Significance: 0.018223

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0406894

Pattern: motif10.motif

Significance: 0.031742900000000004

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.03830069999999999

Pattern: motif9.motif

Significance: 0.032835199999999995

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.044425900000000004

Pattern: motif11.motif

Significance: 0.0485226

ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00391916

Pattern: motif4.motif

Significance: 0.00132644

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.00516584

Pattern: motif4.motif

Significance: 0.00263689

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 7.47201e-05

Pattern: motif15.motif

Significance: 0.043247100000000004

Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.027718700000000002

Pattern: motif19.motif

Significance: 0.0571202

BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.00102017

Pattern: motif15.motif

Significance: 0.000582149

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.00058205

Pattern: motif7.motif

Significance: 0.00339195

BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.022059

Pattern: motif7.motif

Significance: 0.0393931

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00265472

/

Pattern: metacluster_1/pattern_10

Significance: 0.013827500000000001

Pattern: motif2.motif

Significance: 0.012213600000000002

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 6.74047e-05

Pattern: motif13.motif

Significance: 0.0251725

KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0287128

Pattern: motif15.motif

Significance: 0.017929900000000002

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.032425

Pattern: motif18.motif

Significance: 0.033520999999999995

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.000206995

Pattern: motif13.motif

Significance: 0.038454300000000004

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 2.1276500000000002e-05

Pattern: motif2.motif

Significance: 0.00263517

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00168326

Pattern: motif16.motif

Significance: 0.0255753

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00014000299999999998

Pattern: motif14.motif

Significance: 0.027313999999999998

CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.013156399999999999

Pattern: motif2.motif

Significance: 0.041182800000000006

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 3.79094e-05

Pattern: motif4.motif

Significance: 0.0135029

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00269394

Pattern: motif11.motif

Significance: 0.0037042999999999998

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00291915

/

Pattern: metacluster_1/pattern_15

Significance: 0.00347276

Pattern: motif7.motif

Significance: 0.00557253

Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.000255572

Pattern: motif8.motif

Significance: 0.0200908

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00705819

Pattern: motif19.motif

Significance: 0.038343199999999994

Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0031486

Pattern: motif15.motif

Significance: 0.033504

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.05046269999999999

/

Pattern: metacluster_1/pattern_6

Significance: 0.000977005

Pattern: motif10.motif

Significance: 0.00529895

WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00493323

/

Pattern: metacluster_1/pattern_11

Significance: 0.0451003

Pattern: motif2.motif

Significance: 0.045750900000000004

wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0047876

Pattern: motif4.motif

Significance: 0.030643200000000002

Unique Cell types only TF-MoDISco finds Olig2: #41

Cell typeModiscoHomer
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0555462

Absent
proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0284428

Absent
preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.046961300000000004

Absent
B1_B;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.047368

Absent
prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.000577154

/

Pattern: metacluster_1/pattern_21

Significance: 0.013988399999999998

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0296236

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.05587999999999999

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.00340737

Absent
MN1;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.00558688

Absent
3T3-L1;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0457584

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00774856

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.0284251

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0101008

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00560098

/

Pattern: metacluster_0/pattern_22

Significance: 0.0352779

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.000756332

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.012377899999999999

/

Pattern: metacluster_1/pattern_23

Significance: 0.0126219

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.000366624

/

Pattern: metacluster_0/pattern_22

Significance: 0.03617940000000001

/

Pattern: metacluster_0/pattern_24

Significance: 0.0320133

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.00389527

/

Pattern: metacluster_0/pattern_22

Significance: 0.022395500000000002

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0452741

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00020826299999999998

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 2.65617e-05

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0009896010000000001

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 2.46044e-05

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.000491845

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0208639

Absent
ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0316168

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0271625

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.0168388

Absent
Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00723974

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0459774

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0470778

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.039289300000000006

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0523643

Absent
FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.0554293

Absent
3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0475111

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.014064199999999999

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0142942

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00934309

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.000380419

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0550609

/

Pattern: metacluster_0/pattern_12

Significance: 0.00368088

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.016790700000000002

Absent
Unique Cell types only Homer finds Olig2: #1

Cell typeModiscoHomer
NPC;Ch13;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.027757999999999998