In [1]:
# Parameters
data_name = "Hoxa5"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:12:18,143 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Hoxa5: Motif: M00478_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Hoxa5: #17

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.000478719

Pattern: motif4.motif

Significance: 0.0542219

/

Pattern: motif8.motif

Significance: 0.00734123

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.045898400000000006

/

Pattern: metacluster_0/pattern_3

Significance: 0.000244481

Pattern: motif3.motif

Significance: 0.033958499999999996

/

Pattern: motif5.motif

Significance: 0.0573095

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0172132

Pattern: motif3.motif

Significance: 0.0232483

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00578856

Pattern: motif9.motif

Significance: 0.00969428

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.012856999999999999

Pattern: motif6.motif

Significance: 0.0194594

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00350723

Pattern: motif2.motif

Significance: 0.00850396

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00335235

Pattern: motif3.motif

Significance: 0.00754298

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0359829

Pattern: motif3.motif

Significance: 0.019040900000000003

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00811534

Pattern: motif13.motif

Significance: 0.0176275

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00664308

Pattern: motif4.motif

Significance: 0.0149477

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00342094

Pattern: motif2.motif

Significance: 0.00753212

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.00349766

Pattern: motif2.motif

Significance: 0.00787809

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0530471

Pattern: motif10.motif

Significance: 0.0263041

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0446907

Pattern: motif13.motif

Significance: 0.0222992

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.005985

Pattern: motif6.motif

Significance: 0.0210396

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0093618

Pattern: motif14.motif

Significance: 0.0114132

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0026766

Pattern: motif2.motif

Significance: 0.0076357

Unique Cell types only TF-MoDISco finds Hoxa5: #12

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_25

Significance: 0.010529

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0394385

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.000519656

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.04917609999999999

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.00464817

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 3.42084e-06

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0293974

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 3.48323e-05

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_11

Significance: 0.017486099999999997

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0123945

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.014048699999999999

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.013260299999999997

Absent
Unique Cell types only Homer finds Hoxa5: #7

Cell typeModiscoHomer
LRG_INTSTN;8wks;D;EnAbsent

Pattern: motif4.motif

Significance: 0.0120868

wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0394848

SML_INTSTN;A;CLAbsent

Pattern: motif3.motif

Significance: 0.0222325

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0183912

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.020893099999999998

wES;3rd_Rhmbmr;E8.5;A;GEOAbsent

Pattern: motif16.motif

Significance: 0.023635

KDNY;P0;D;EnAbsent

Pattern: motif4.motif

Significance: 0.00611869