In [1]:
# Parameters
data_name = "Sox10"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:35:23,443 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Sox10: Motif: M00826_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox10: #2

Cell typeModiscoHomer
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.000857468

Pattern: motif14.motif

Significance: 0.00106418

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.010354899999999998

Pattern: motif9.motif

Significance: 0.0380375

Unique Cell types only TF-MoDISco finds Sox10: #29

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_18

Significance: 6.5359500000000005e-06

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.00156532

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.00327712

Absent
NRV;Eye-OPTC;A;CL

Pattern: metacluster_0/pattern_2

Significance: 7.90989e-05

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_18

Significance: 0.000603314

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.0577747

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.000244648

Absent
BRN;MDL_OBLNGT;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.000567791

Absent
BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0005942

Absent
WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_18

Significance: 7.200369999999999e-06

Absent
FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_11

Significance: 2.48909e-06

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.0335006

Absent
Mammary;A;CL

Pattern: metacluster_0/pattern_10

Significance: 3.5601e-05

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.056690599999999994

Absent
Mammary_GLND;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 5.14945e-05

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.00037400599999999997

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0500937

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.00480942

Absent
NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.059536

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.000314286

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0540628

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.04716819999999999

Absent
ES;E14;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.0381123

Absent
Muller;P12;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.000493598

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.00011509899999999999

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.038542599999999996

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 3.31784e-05

Absent
SPNL_CHRD;A;CL

Pattern: metacluster_1/pattern_6

Significance: 4.03698e-05

Absent
wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_17

Significance: 1.51676e-05

Absent
No Cell types only Homer finds Sox10