In [1]:
# Parameters
data_name = "ENDRM_ESD;A;GEO"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_149-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_149-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"
In [2]:
from matlas.reports import display_metadata
load data from labcluster
Using TensorFlow backend.
2019-08-30 19:13:24,498 [WARNING] git-lfs not installed
In [3]:
display_metadata(data_name, perf_file, reportfile, sheetname)
    Sample Information
    MetaData NameDescription
    Cell typeES_derived Definitive Endoderm
    Cell GroupCancer or Immortalized cells
    Experiment NameATAC
    Experiment GroupGEO
    Pipeline Output
    replicateNaïve overlap peaksIDR peaksTSS enrichment (< 8 is very poor <10 is low)Final number of unique mapping, dup-filtered, chrM filtered readsNumber of reads in called peak regionsFraction of reads in called peak regionsNumber of reads in promoter regionsFraction of reads in promoter regionsNumber of reads in enhancer regionsFraction of reads in enhancer regions
    rep11603781043278.74316366306765978430.103755243220.0868220455350.3464
    rep21603781043277.63928416936686879900.103267289560.08292545110.3476
    Modelling Metadata
    MetricValue
    auPRC0.6679
    Calibrated Recall at 50% FDR0.25
    Number of Positive Examples in Test Data104839
    Number of Negative Examples in Test Data7966012
    Imbalance Ratio in Test Data0.013
    Test Chromosomeschr2, chr3, chr19
In [4]:
from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns
In [5]:
display_denovo_patterns(data_name, modisco_root=modisco_root)
TF-MoDISco is using the TensorFlow backend.
The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco
Click here for Denovo Patterns by TF-MoDISco: #24
Pattern NameTF Name(s)Modisco
metacluster_1/pattern_0 # seqlets: 3180 SequenceContrib ScoresHyp_Contrib Scores
Sp3, Sp2, Klf3, Sp1, Sp4, Klf6, Klf15, Zfx, Klf1, Wt1,

Maz, Sp5, Egr1, Zbtb17, E2f4, Klf5, Klf4, Klf7, Klf8, Egr2, Klf12,

Zfp281, Usf2, Tfap2c, E2f1, Rela, Ctcfl, Mxi1, E2f7, Sall4, Rfx1
metacluster_1/pattern_1 # seqlets: 3168 SequenceContrib ScoresHyp_Contrib Scores
Ctcf
metacluster_1/pattern_2 # seqlets: 2525 SequenceContrib ScoresHyp_Contrib Scores
Zic3, Zic2, Zic1
metacluster_1/pattern_3 # seqlets: 2259 SequenceContrib ScoresHyp_Contrib Scores
Zfp335, Myc
metacluster_1/pattern_4 # seqlets: 1695 SequenceContrib ScoresHyp_Contrib Scores
Pou5f1, Nanog, Pou2f2, Sox2, Pou2f1
metacluster_1/pattern_5 # seqlets: 1463 SequenceContrib ScoresHyp_Contrib Scores
Sox4, Sox3, Sox6, Sry, Sox12, Sox14, Sox7, Sox17, Sox8, Sox18,

Sox11, Lef1, Sox21, Sox5, Sox10, Sox15, Sox9, Sox30
metacluster_1/pattern_6 # seqlets: 1137 SequenceContrib ScoresHyp_Contrib Scores
Foxa1, Foxa2, Foxm1, Foxd1, Foxa3, Foxc1, Foxd3, Foxb1, Foxc2, Foxl1,

Foxj2, Foxg1, Foxk1, Foxl2, Foxp2, Foxj3, Gm5294, Foxo1, Foxp1, Foxo3, Foxj1,

Foxq1
metacluster_1/pattern_7 # seqlets: 963 SequenceContrib ScoresHyp_Contrib Scores
Otx2, Crx, Pitx3, Pitx2, Pitx1, Obox1, Dmbx1, Otx1, Q8VHG7_MOUSE, Obox5,

Obox3, Gsc, Obox6
metacluster_1/pattern_8 # seqlets: 844 SequenceContrib ScoresHyp_Contrib Scores
Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_9 # seqlets: 734 SequenceContrib ScoresHyp_Contrib Scores
Atf1, Atf7, Creb1, Atf2, Creb5, Jdp2, Crem, Tfec, Srebf1, Bhlhe40,

Usf1, Mitf, Rxrb, Tfe3, Mlx, Tfeb, Srebf2, Dbp, Arntl, Creb3l2, Hlf,

Nfil3, Atf3, Jun, Clock, Tef, Xbp1, Mafb
metacluster_1/pattern_10 # seqlets: 619 SequenceContrib ScoresHyp_Contrib Scores
Nrf1
metacluster_1/pattern_11 # seqlets: 477 SequenceContrib ScoresHyp_Contrib Scores
Rfx3, Rfx2, Rfx4, Rfx6, Rfx7
metacluster_1/pattern_12 # seqlets: 435 SequenceContrib ScoresHyp_Contrib Scores
Six2, Six1, Six4
metacluster_1/pattern_13 # seqlets: 407 SequenceContrib ScoresHyp_Contrib Scores
Gata2, Tal1, Gata1, Gata4, Gata6, Gata3, Gata5, Mecom
metacluster_1/pattern_14 # seqlets: 352 SequenceContrib ScoresHyp_Contrib Scores
Fosl2, Fosb, Batf, Junb, Fosl1, Jund, Fos, Bach2, Mafk, Nfe2,

Nfe2l2, Bach1, Mafg, Mafa, Maff, Maf, Nfatc1
metacluster_1/pattern_15 # seqlets: 331 SequenceContrib ScoresHyp_Contrib Scores
Gabpa, Elk1, Ets1, Fli1, Erg, Elk4, Elf1, Etv2, Etv1, Elk3,

Etv4, Etv5, Ehf, Etv3, Etv6, XP_911724.4, Fev, Elf4, Elf2, Elf5, Elf3,

Spdef, Spi1, Nkx2-2
metacluster_1/pattern_16 # seqlets: 279 SequenceContrib ScoresHyp_Contrib Scores
Zfp143, Thap11, Tbx2
metacluster_1/pattern_17 # seqlets: 229 SequenceContrib ScoresHyp_Contrib Scores
Tead4, Tead2, Tead1
metacluster_1/pattern_18 # seqlets: 170 SequenceContrib ScoresHyp_Contrib Scores
Rest
metacluster_1/pattern_19 # seqlets: 117 SequenceContrib ScoresHyp_Contrib Scores
Taf1, Yy1, Zfp42
metacluster_1/pattern_20 # seqlets: 51 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_21 # seqlets: 47 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_22 # seqlets: 47 SequenceContrib ScoresHyp_Contrib Scores
Grhl2
metacluster_1/pattern_23 # seqlets: 39 SequenceContrib ScoresHyp_Contrib Scores
Click here for Motifs by TF-MoDISco: #197
TF NamePattern(s)
Sp3
Pattern NameModiscoSignificance
metacluster_1/pattern_09.21645e-12
metacluster_1/pattern_30.000968432
metacluster_1/pattern_150.013677000000000002
metacluster_1/pattern_190.000161111
Sp2
Pattern NameModiscoSignificance
metacluster_1/pattern_09.21645e-12
metacluster_1/pattern_30.00036053800000000004
metacluster_1/pattern_150.0050067
metacluster_1/pattern_191.28893e-05
Klf3
Pattern NameModiscoSignificance
metacluster_1/pattern_07.92142e-09
metacluster_1/pattern_30.0195737
metacluster_1/pattern_190.00625527
Sp1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00018271400000000003
metacluster_1/pattern_30.00411484
metacluster_1/pattern_150.0046971
metacluster_1/pattern_190.000100981
Sp4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00138362
metacluster_1/pattern_190.0343713
Klf6
Pattern NameModiscoSignificance
metacluster_1/pattern_06.63148e-07
metacluster_1/pattern_190.018100599999999998
Klf15
Pattern NameModiscoSignificance
metacluster_1/pattern_08.86842e-06
metacluster_1/pattern_150.05326419999999999
metacluster_1/pattern_190.0449447
Zfx
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00738296
metacluster_1/pattern_30.0402674
metacluster_1/pattern_190.00375787
Klf1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0326238
Wt1
Pattern NameModiscoSignificance
metacluster_1/pattern_02.91752e-05
metacluster_1/pattern_190.016346799999999998
Maz
Pattern NameModiscoSignificance
metacluster_1/pattern_03.53265e-05
metacluster_1/pattern_150.05326419999999999
metacluster_1/pattern_190.0158268
Sp5
Pattern NameModiscoSignificance
metacluster_1/pattern_09.763719999999999e-05
Egr1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00780865
metacluster_1/pattern_190.0269742
Zbtb17
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00018271400000000003
metacluster_1/pattern_190.00375787
E2f4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00021722400000000002
Klf5
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000268864
Klf4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00111168
Klf7
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000590013
Klf8
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00148845
Egr2
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00173172
metacluster_1/pattern_190.0528368
Klf12
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00173172
Zfp281
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00395466
Usf2
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00356761
metacluster_1/pattern_30.00176115
metacluster_1/pattern_90.0380503
Tfap2c
Pattern NameModiscoSignificance
metacluster_1/pattern_00.018953099999999997
metacluster_1/pattern_30.036586900000000006
E2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.021809799999999997
Rela
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0232054
Ctcfl
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0232054
metacluster_1/pattern_11.60102e-07
metacluster_1/pattern_30.0252642
Mxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0326238
metacluster_1/pattern_30.00210776
metacluster_1/pattern_150.00446813
metacluster_1/pattern_190.058236199999999995
E2f7
Pattern NameModiscoSignificance
metacluster_1/pattern_00.038250099999999995
Sall4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0537149
Rfx1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.058174000000000003
metacluster_1/pattern_30.0013899000000000001
metacluster_1/pattern_111.42263e-07
Ctcf
Pattern NameModiscoSignificance
metacluster_1/pattern_14.8342300000000005e-15
metacluster_1/pattern_20.0331367
Zic3
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00687765
Zic2
Pattern NameModiscoSignificance
metacluster_1/pattern_21.39327e-08
Zic1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00687765
Zfp335
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0402674
Myc
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0582073
Pou5f1
Pattern NameModiscoSignificance
metacluster_1/pattern_40.000947846
metacluster_1/pattern_50.055899300000000006
Nanog
Pattern NameModiscoSignificance
metacluster_1/pattern_43.6739299999999996e-05
metacluster_1/pattern_50.000111945
Pou2f2
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00834232
Sox2
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00270511
metacluster_1/pattern_50.000249023
metacluster_1/pattern_110.0528503
Pou2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_40.030921499999999998
Sox4
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00674688
Sox3
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00674688
Sox6
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00396967
Sry
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0409659
Sox12
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00180815
Sox14
Pattern NameModiscoSignificance
metacluster_1/pattern_50.013540799999999999
Sox7
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00299115
Sox17
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00361017
Sox8
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00396967
Sox18
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00396967
Sox11
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00470708
Lef1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00580466
Sox21
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00674688
Sox5
Pattern NameModiscoSignificance
metacluster_1/pattern_50.048505900000000005
Sox10
Pattern NameModiscoSignificance
metacluster_1/pattern_50.010354899999999998
Sox15
Pattern NameModiscoSignificance
metacluster_1/pattern_50.012367399999999999
Sox9
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0218307
Sox30
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0252298
Foxa1
Pattern NameModiscoSignificance
metacluster_1/pattern_64.93783e-06
Foxa2
Pattern NameModiscoSignificance
metacluster_1/pattern_60.011935600000000001
Foxm1
Pattern NameModiscoSignificance
metacluster_1/pattern_68.254800000000001e-06
Foxd1
Pattern NameModiscoSignificance
metacluster_1/pattern_61.15567e-05
Foxa3
Pattern NameModiscoSignificance
metacluster_1/pattern_61.24427e-05
Foxc1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.011935600000000001
Foxd3
Pattern NameModiscoSignificance
metacluster_1/pattern_62.04129e-05
Foxb1
Pattern NameModiscoSignificance
metacluster_1/pattern_62.8510900000000002e-05
Foxc2
Pattern NameModiscoSignificance
metacluster_1/pattern_62.8510900000000002e-05
Foxl1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.00112879
Foxj2
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0396653
Foxg1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0124935
metacluster_1/pattern_210.05411130000000001
Foxk1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0227737
Foxl2
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0027908
Foxp2
Pattern NameModiscoSignificance
metacluster_1/pattern_60.011417299999999998
Foxj3
Pattern NameModiscoSignificance
metacluster_1/pattern_60.050611800000000005
Gm5294
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0124935
Foxo1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0196661
Foxp1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0124935
Foxo3
Pattern NameModiscoSignificance
metacluster_1/pattern_60.014976
Foxj1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0215987
Foxq1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0386458
Otx2
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00338918
Crx
Pattern NameModiscoSignificance
metacluster_1/pattern_70.023784200000000002
Pitx3
Pattern NameModiscoSignificance
metacluster_1/pattern_70.000495433
Pitx2
Pattern NameModiscoSignificance
metacluster_1/pattern_70.000495433
Pitx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00185258
Obox1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.000637515
Dmbx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00168862
Otx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0320176
Q8VHG7_MOUSE
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0035239000000000004
Obox5
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00595113
Obox3
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00708619
Gsc
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0201554
Obox6
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0245343
Nfyb
Pattern NameModiscoSignificance
metacluster_1/pattern_81.54246e-15
Nfyc
Pattern NameModiscoSignificance
metacluster_1/pattern_85.987719999999999e-10
Nfya
Pattern NameModiscoSignificance
metacluster_1/pattern_82.85004e-09
Foxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_81.991e-06
Pbx3
Pattern NameModiscoSignificance
metacluster_1/pattern_87.18715e-06
Atf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0245232
Atf7
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00434917
Creb1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00344497
Atf2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00565965
Creb5
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00137325
Jdp2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.015138200000000001
metacluster_1/pattern_140.00015428
Crem
Pattern NameModiscoSignificance
metacluster_1/pattern_90.015731799999999997
Tfec
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00398187
Srebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0391277
Bhlhe40
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0471036
Usf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00760375
Mitf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.042839
Rxrb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0111954
Tfe3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0359719
Mlx
Pattern NameModiscoSignificance
metacluster_1/pattern_90.015138200000000001
Tfeb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.05413250000000001
Srebf2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0359719
Dbp
Pattern NameModiscoSignificance
metacluster_1/pattern_90.037077099999999995
Arntl
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380503
Creb3l2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380503
Hlf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.042839
Nfil3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.043260900000000005
Atf3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0467279
metacluster_1/pattern_142.09453e-06
Jun
Pattern NameModiscoSignificance
metacluster_1/pattern_90.049070800000000005
metacluster_1/pattern_141.33031e-05
Clock
Pattern NameModiscoSignificance
metacluster_1/pattern_90.049555300000000004
Tef
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0527939
Xbp1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.05413250000000001
Mafb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.05413250000000001
metacluster_1/pattern_140.00482453
Nrf1
Pattern NameModiscoSignificance
metacluster_1/pattern_101.04011e-06
Rfx3
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00191512
Rfx2
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0229123
Rfx4
Pattern NameModiscoSignificance
metacluster_1/pattern_114.6008900000000006e-05
Rfx6
Pattern NameModiscoSignificance
metacluster_1/pattern_110.000109399
Rfx7
Pattern NameModiscoSignificance
metacluster_1/pattern_110.000806394
Six2
Pattern NameModiscoSignificance
metacluster_1/pattern_125.651530000000001e-10
Six1
Pattern NameModiscoSignificance
metacluster_1/pattern_127.22178e-07
Six4
Pattern NameModiscoSignificance
metacluster_1/pattern_128.0197e-07
Gata2
Pattern NameModiscoSignificance
metacluster_1/pattern_137.9691e-08
Tal1
Pattern NameModiscoSignificance
metacluster_1/pattern_131.59382e-07
Gata1
Pattern NameModiscoSignificance
metacluster_1/pattern_131.57349e-06
Gata4
Pattern NameModiscoSignificance
metacluster_1/pattern_130.000458075
Gata6
Pattern NameModiscoSignificance
metacluster_1/pattern_130.000122809
Gata3
Pattern NameModiscoSignificance
metacluster_1/pattern_130.034452699999999996
Gata5
Pattern NameModiscoSignificance
metacluster_1/pattern_130.00623762
Mecom
Pattern NameModiscoSignificance
metacluster_1/pattern_130.05865359999999999
Fosl2
Pattern NameModiscoSignificance
metacluster_1/pattern_147.2948899999999995e-06
Fosb
Pattern NameModiscoSignificance
metacluster_1/pattern_146.484349999999999e-06
Batf
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00150179
Junb
Pattern NameModiscoSignificance
metacluster_1/pattern_140.0308722
Fosl1
Pattern NameModiscoSignificance
metacluster_1/pattern_141.64692e-05
Jund
Pattern NameModiscoSignificance
metacluster_1/pattern_140.0189883
Fos
Pattern NameModiscoSignificance
metacluster_1/pattern_144.93641e-05
Bach2
Pattern NameModiscoSignificance
metacluster_1/pattern_140.000357806
Mafk
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00150179
Nfe2
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00109262
Nfe2l2
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00138587
Bach1
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00190816
Mafg
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00333697
Mafa
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00392762
Maff
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00452978
Maf
Pattern NameModiscoSignificance
metacluster_1/pattern_140.011865700000000002
Nfatc1
Pattern NameModiscoSignificance
metacluster_1/pattern_140.0194678
Gabpa
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000567824
Elk1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000107684
Ets1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Fli1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Erg
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Elk4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Elf1
Pattern NameModiscoSignificance
metacluster_1/pattern_157.99163e-06
Etv2
Pattern NameModiscoSignificance
metacluster_1/pattern_159.965950000000001e-05
Etv1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Elk3
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000283021
Etv4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00852753
Etv5
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000360164
Ehf
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00505259
Etv3
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000794498
Etv6
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0248496
XP_911724.4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000794498
Fev
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00144858
Elf4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00438572
Elf2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00913632
Elf5
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0421871
Elf3
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0446389
Spdef
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0472405
Spi1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0590336
Nkx2-2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.049636900000000005
Zfp143
Pattern NameModiscoSignificance
metacluster_1/pattern_162.6990900000000003e-21
Thap11
Pattern NameModiscoSignificance
metacluster_1/pattern_161.36044e-19
Tbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_164.37082e-13
Tead4
Pattern NameModiscoSignificance
metacluster_1/pattern_170.011681
Tead2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.011681
Tead1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0214915
Rest
Pattern NameModiscoSignificance
metacluster_1/pattern_182.1304e-22
Taf1
Pattern NameModiscoSignificance
metacluster_1/pattern_193.69173e-06
Yy1
Pattern NameModiscoSignificance
metacluster_1/pattern_197.12115e-06
Zfp42
Pattern NameModiscoSignificance
metacluster_1/pattern_190.00625527
Grhl2
Pattern NameModiscoSignificance
metacluster_1/pattern_220.00223022
In [6]:
display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)
Number of CISBP TFs obtained by TF-MoDISco and Homer
Shared TFs between TF-MoDISco and Homer: #124
TF NameModiscoHomer
Nrf1
Pattern NameModiscoSignificance
metacluster_1/pattern_101.04011e-06
Pattern NameHomerSignificance
motif12.motif1.32347e-05
Rxrb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0111954
Pattern NameHomerSignificance
motif13.motif0.020104900000000002
Etv1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Pattern NameHomerSignificance
motif8.motif0.011495100000000001
Sp3
Pattern NameModiscoSignificance
metacluster_1/pattern_09.21645e-12
metacluster_1/pattern_30.000968432
metacluster_1/pattern_150.013677000000000002
metacluster_1/pattern_190.000161111
Pattern NameHomerSignificance
motif2.motif9.64159e-05
Sox11
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00470708
Pattern NameHomerSignificance
motif9.motif0.0066316000000000005
Obox5
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00595113
Pattern NameHomerSignificance
motif14.motif0.02005
Hlf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.042839
Pattern NameHomerSignificance
motif19.motif0.057739099999999995
Etv6
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0248496
Pattern NameHomerSignificance
motif8.motif0.0192373
Gabpa
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000567824
Pattern NameHomerSignificance
motif8.motif0.0102239
Atf2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00565965
Pattern NameHomerSignificance
motif13.motif0.044019
motif19.motif0.0193983
Pitx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00185258
Pattern NameHomerSignificance
motif3.motif0.0443894
Sox9
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0218307
Pattern NameHomerSignificance
motif9.motif0.047568
Foxd3
Pattern NameModiscoSignificance
metacluster_1/pattern_62.04129e-05
Pattern NameHomerSignificance
motif5.motif2.0492399999999997e-05
Elk4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Pattern NameHomerSignificance
motif8.motif0.0107265
Etv5
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000360164
Pattern NameHomerSignificance
motif8.motif0.00470751
Sry
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0409659
Pattern NameHomerSignificance
motif9.motif0.000845156
Klf7
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000590013
Pattern NameHomerSignificance
motif2.motif0.00011117399999999999
Elk3
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000283021
Pattern NameHomerSignificance
motif8.motif0.00748468
Egr2
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00173172
metacluster_1/pattern_190.0528368
Pattern NameHomerSignificance
motif2.motif0.0195298
Elf2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00913632
Pattern NameHomerSignificance
motif8.motif0.00748468
Klf3
Pattern NameModiscoSignificance
metacluster_1/pattern_07.92142e-09
metacluster_1/pattern_30.0195737
metacluster_1/pattern_190.00625527
Pattern NameHomerSignificance
motif2.motif4.0228699999999997e-05
Etv4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00852753
Pattern NameHomerSignificance
motif8.motif0.0177672
Tfe3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0359719
Pattern NameHomerSignificance
motif19.motif0.0047737
Srebf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0391277
Pattern NameHomerSignificance
motif19.motif0.028264499999999998
Sox2
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00270511
metacluster_1/pattern_50.000249023
metacluster_1/pattern_110.0528503
Pattern NameHomerSignificance
motif9.motif0.00011707
Fev
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00144858
Pattern NameHomerSignificance
motif8.motif0.00194354
Atf7
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00434917
Pattern NameHomerSignificance
motif13.motif0.04208119999999999
motif19.motif0.0117585
Foxg1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0124935
metacluster_1/pattern_210.05411130000000001
Pattern NameHomerSignificance
motif5.motif0.0202613
Foxb1
Pattern NameModiscoSignificance
metacluster_1/pattern_62.8510900000000002e-05
Pattern NameHomerSignificance
motif5.motif2.4430300000000002e-05
Tbx2
Pattern NameModiscoSignificance
metacluster_1/pattern_164.37082e-13
Pattern NameHomerSignificance
motif6.motif8.16547e-05
motif15.motif0.042831
Zbtb17
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00018271400000000003
metacluster_1/pattern_190.00375787
Pattern NameHomerSignificance
motif2.motif0.00479213
Foxc2
Pattern NameModiscoSignificance
metacluster_1/pattern_62.8510900000000002e-05
Pattern NameHomerSignificance
motif5.motif0.000222256
Usf2
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00356761
metacluster_1/pattern_30.00176115
metacluster_1/pattern_90.0380503
Pattern NameHomerSignificance
motif19.motif0.0218095
Klf4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00111168
Pattern NameHomerSignificance
motif2.motif0.0118788
Ctcfl
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0232054
metacluster_1/pattern_11.60102e-07
metacluster_1/pattern_30.0252642
Pattern NameHomerSignificance
motif1.motif0.00043940099999999996
motif10.motif0.0356052
Foxj2
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0396653
Pattern NameHomerSignificance
motif5.motif0.033660199999999994
Foxl1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.00112879
Pattern NameHomerSignificance
motif5.motif0.0047364
Foxa1
Pattern NameModiscoSignificance
metacluster_1/pattern_64.93783e-06
Pattern NameHomerSignificance
motif5.motif3.66918e-05
Sox5
Pattern NameModiscoSignificance
metacluster_1/pattern_50.048505900000000005
Pattern NameHomerSignificance
motif9.motif0.029668200000000002
Sp4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00138362
metacluster_1/pattern_190.0343713
Pattern NameHomerSignificance
motif2.motif0.00962961
Tfec
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00398187
Pattern NameHomerSignificance
motif19.motif0.00536577
Foxm1
Pattern NameModiscoSignificance
metacluster_1/pattern_68.254800000000001e-06
Pattern NameHomerSignificance
motif5.motif2.0492399999999997e-05
Sox30
Pattern NameModiscoSignificance
metacluster_1/pattern_50.0252298
Pattern NameHomerSignificance
motif9.motif0.0420841
Creb5
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00137325
Pattern NameHomerSignificance
motif13.motif0.020104900000000002
Otx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0320176
Pattern NameHomerSignificance
motif14.motif0.0231168
Clock
Pattern NameModiscoSignificance
metacluster_1/pattern_90.049555300000000004
Pattern NameHomerSignificance
motif19.motif0.0346611
Zfp143
Pattern NameModiscoSignificance
metacluster_1/pattern_162.6990900000000003e-21
Pattern NameHomerSignificance
motif4.motif0.0198928
motif6.motif1.17425e-05
Lef1
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00580466
Pattern NameHomerSignificance
motif9.motif0.00535713
Klf5
Pattern NameModiscoSignificance
metacluster_1/pattern_00.000268864
Pattern NameHomerSignificance
motif2.motif0.00297688
Q8VHG7_MOUSE
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0035239000000000004
Pattern NameHomerSignificance
motif14.motif0.016606400000000004
Mitf
Pattern NameModiscoSignificance
metacluster_1/pattern_90.042839
Pattern NameHomerSignificance
motif19.motif0.00271703
Crx
Pattern NameModiscoSignificance
metacluster_1/pattern_70.023784200000000002
Pattern NameHomerSignificance
motif3.motif0.053120900000000006
motif14.motif0.0325856
Foxp2
Pattern NameModiscoSignificance
metacluster_1/pattern_60.011417299999999998
Pattern NameHomerSignificance
motif5.motif0.0212162
Crem
Pattern NameModiscoSignificance
metacluster_1/pattern_90.015731799999999997
Pattern NameHomerSignificance
motif13.motif0.020104900000000002
motif19.motif0.0317313
Usf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00760375
Pattern NameHomerSignificance
motif19.motif0.0133264
E2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.021809799999999997
Pattern NameHomerSignificance
motif2.motif0.00479213
Obox1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.000637515
Pattern NameHomerSignificance
motif14.motif0.028779000000000002
Sox10
Pattern NameModiscoSignificance
metacluster_1/pattern_50.010354899999999998
Pattern NameHomerSignificance
motif9.motif0.0380375
Otx2
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00338918
Pattern NameHomerSignificance
motif3.motif0.053120900000000006
motif14.motif0.0231168
Obox6
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0245343
Pattern NameHomerSignificance
motif3.motif0.049201999999999996
Pou2f2
Pattern NameModiscoSignificance
metacluster_1/pattern_40.00834232
Pattern NameHomerSignificance
motif5.motif0.0437358
Ets1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Pattern NameHomerSignificance
motif8.motif0.0177672
Gsc
Pattern NameModiscoSignificance
metacluster_1/pattern_70.0201554
Pattern NameHomerSignificance
motif3.motif0.0027681
Sox7
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00299115
Pattern NameHomerSignificance
motif9.motif0.00415305
Egr1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00780865
metacluster_1/pattern_190.0269742
Pattern NameHomerSignificance
motif2.motif0.0211796
Foxo1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0196661
Pattern NameHomerSignificance
motif5.motif0.0316173
Foxp1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0124935
Pattern NameHomerSignificance
motif5.motif0.0195983
Etv2
Pattern NameModiscoSignificance
metacluster_1/pattern_159.965950000000001e-05
Pattern NameHomerSignificance
motif8.motif0.0529258
Sox3
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00674688
Pattern NameHomerSignificance
motif9.motif0.00569875
Thap11
Pattern NameModiscoSignificance
metacluster_1/pattern_161.36044e-19
Pattern NameHomerSignificance
motif4.motif0.033306
motif6.motif1.05895e-06
Atf1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0245232
Pattern NameHomerSignificance
motif13.motif0.00572058
motif19.motif0.020767599999999997
Sp1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00018271400000000003
metacluster_1/pattern_30.00411484
metacluster_1/pattern_150.0046971
metacluster_1/pattern_190.000100981
Pattern NameHomerSignificance
motif2.motif0.00799633
Mlx
Pattern NameModiscoSignificance
metacluster_1/pattern_90.015138200000000001
Pattern NameHomerSignificance
motif19.motif0.020767599999999997
Klf12
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00173172
Pattern NameHomerSignificance
motif2.motif0.013761700000000002
Nanog
Pattern NameModiscoSignificance
metacluster_1/pattern_43.6739299999999996e-05
metacluster_1/pattern_50.000111945
Pattern NameHomerSignificance
motif9.motif4.2072799999999995e-05
Pitx2
Pattern NameModiscoSignificance
metacluster_1/pattern_70.000495433
Pattern NameHomerSignificance
motif14.motif0.016606400000000004
E2f7
Pattern NameModiscoSignificance
metacluster_1/pattern_00.038250099999999995
Pattern NameHomerSignificance
motif2.motif0.0224847
Zic3
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00687765
Pattern NameHomerSignificance
motif4.motif0.046587800000000006
Dmbx1
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00168862
Pattern NameHomerSignificance
motif3.motif0.0102344
Sox4
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00674688
Pattern NameHomerSignificance
motif9.motif0.029236500000000002
Sp2
Pattern NameModiscoSignificance
metacluster_1/pattern_09.21645e-12
metacluster_1/pattern_30.00036053800000000004
metacluster_1/pattern_150.0050067
metacluster_1/pattern_191.28893e-05
Pattern NameHomerSignificance
motif2.motif0.000138632
Foxa2
Pattern NameModiscoSignificance
metacluster_1/pattern_60.011935600000000001
Pattern NameHomerSignificance
motif5.motif0.012681999999999999
Elk1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000107684
Pattern NameHomerSignificance
motif8.motif0.00875231
Foxc1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.011935600000000001
Pattern NameHomerSignificance
motif5.motif0.033660199999999994
Tfeb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.05413250000000001
Pattern NameHomerSignificance
motif19.motif0.0008866330000000001
Sp5
Pattern NameModiscoSignificance
metacluster_1/pattern_09.763719999999999e-05
Pattern NameHomerSignificance
motif2.motif0.02854
Foxo3
Pattern NameModiscoSignificance
metacluster_1/pattern_60.014976
Pattern NameHomerSignificance
motif5.motif0.033660199999999994
Klf8
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00148845
Pattern NameHomerSignificance
motif2.motif0.000144273
Fli1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Pattern NameHomerSignificance
motif8.motif0.0187138
Ehf
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00505259
Pattern NameHomerSignificance
motif8.motif0.036238099999999995
Pitx3
Pattern NameModiscoSignificance
metacluster_1/pattern_70.000495433
Pattern NameHomerSignificance
motif3.motif0.053120900000000006
motif14.motif0.02005
Sox21
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00674688
Pattern NameHomerSignificance
motif9.motif0.0141053
Foxd1
Pattern NameModiscoSignificance
metacluster_1/pattern_61.15567e-05
Pattern NameHomerSignificance
motif5.motif0.000403443
motif9.motif0.029236500000000002
Creb3l2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380503
Pattern NameHomerSignificance
motif19.motif0.0564126
Ctcf
Pattern NameModiscoSignificance
metacluster_1/pattern_14.8342300000000005e-15
metacluster_1/pattern_20.0331367
Pattern NameHomerSignificance
motif1.motif5.51248e-05
motif10.motif0.0330789
Klf15
Pattern NameModiscoSignificance
metacluster_1/pattern_08.86842e-06
metacluster_1/pattern_150.05326419999999999
metacluster_1/pattern_190.0449447
Pattern NameHomerSignificance
motif2.motif0.00592656
Sox8
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00396967
Pattern NameHomerSignificance
motif9.motif0.00569875
Arntl
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0380503
Pattern NameHomerSignificance
motif19.motif0.017996400000000003
Sox15
Pattern NameModiscoSignificance
metacluster_1/pattern_50.012367399999999999
Pattern NameHomerSignificance
motif9.motif0.016260399999999998
Jdp2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.015138200000000001
metacluster_1/pattern_140.00015428
Pattern NameHomerSignificance
motif13.motif0.048152
Foxk1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0227737
Pattern NameHomerSignificance
motif5.motif0.04560669999999999
E2f4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00021722400000000002
Pattern NameHomerSignificance
motif2.motif0.00109568
Foxj3
Pattern NameModiscoSignificance
metacluster_1/pattern_60.050611800000000005
Pattern NameHomerSignificance
motif5.motif0.033660199999999994
Bhlhe40
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0471036
Pattern NameHomerSignificance
motif19.motif0.00959782
Elf1
Pattern NameModiscoSignificance
metacluster_1/pattern_157.99163e-06
Pattern NameHomerSignificance
motif8.motif0.00217276
Sox17
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00361017
Pattern NameHomerSignificance
motif9.motif0.00561556
Sox6
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00396967
Pattern NameHomerSignificance
motif9.motif0.00487707
Myc
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0582073
Pattern NameHomerSignificance
motif19.motif0.058613599999999995
Zic2
Pattern NameModiscoSignificance
metacluster_1/pattern_21.39327e-08
Pattern NameHomerSignificance
motif4.motif0.000656977
Etv3
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000794498
Pattern NameHomerSignificance
motif8.motif0.025957499999999998
Foxa3
Pattern NameModiscoSignificance
metacluster_1/pattern_61.24427e-05
Pattern NameHomerSignificance
motif5.motif0.000403443
Srebf2
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0359719
Pattern NameHomerSignificance
motif19.motif0.00526212
Sox18
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00396967
Pattern NameHomerSignificance
motif9.motif0.00487707
Pou5f1
Pattern NameModiscoSignificance
metacluster_1/pattern_40.000947846
metacluster_1/pattern_50.055899300000000006
Pattern NameHomerSignificance
motif9.motif0.030708600000000003
Erg
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000320271
Pattern NameHomerSignificance
motif8.motif0.0187138
Sox14
Pattern NameModiscoSignificance
metacluster_1/pattern_50.013540799999999999
Pattern NameHomerSignificance
motif9.motif0.00686692
Pou2f1
Pattern NameModiscoSignificance
metacluster_1/pattern_40.030921499999999998
Pattern NameHomerSignificance
motif5.motif0.045500900000000004
XP_911724.4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.000794498
Pattern NameHomerSignificance
motif8.motif0.0237935
Klf1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0326238
Pattern NameHomerSignificance
motif2.motif0.0253337
Klf6
Pattern NameModiscoSignificance
metacluster_1/pattern_06.63148e-07
metacluster_1/pattern_190.018100599999999998
Pattern NameHomerSignificance
motif2.motif0.000641944
Elf5
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0421871
Pattern NameHomerSignificance
motif8.motif0.0127583
Elf3
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0446389
Pattern NameHomerSignificance
motif8.motif0.056197500000000004
Creb1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.00344497
Pattern NameHomerSignificance
motif13.motif0.020104900000000002
motif19.motif0.059792399999999996
Sox12
Pattern NameModiscoSignificance
metacluster_1/pattern_50.00180815
Pattern NameHomerSignificance
motif9.motif0.00429588
Unique TF-MoDISco TFs: #73
TF NameModiscoHomer
Grhl2
Pattern NameModiscoSignificance
metacluster_1/pattern_220.00223022
Absent
Rfx4
Pattern NameModiscoSignificance
metacluster_1/pattern_114.6008900000000006e-05
Absent
Xbp1
Pattern NameModiscoSignificance
metacluster_1/pattern_90.05413250000000001
Absent
Fos
Pattern NameModiscoSignificance
metacluster_1/pattern_144.93641e-05
Absent
Rela
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0232054
Absent
Nfe2l2
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00138587
Absent
Rfx2
Pattern NameModiscoSignificance
metacluster_1/pattern_110.0229123
Absent
Sall4
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0537149
Absent
Foxl2
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0027908
Absent
Zfp335
Pattern NameModiscoSignificance
metacluster_1/pattern_30.0402674
Absent
Tead2
Pattern NameModiscoSignificance
metacluster_1/pattern_170.011681
Absent
Fosl1
Pattern NameModiscoSignificance
metacluster_1/pattern_141.64692e-05
Absent
Gm5294
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0124935
Absent
Zfp42
Pattern NameModiscoSignificance
metacluster_1/pattern_190.00625527
Absent
Atf3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0467279
metacluster_1/pattern_142.09453e-06
Absent
Foxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_81.991e-06
Absent
Nfe2
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00109262
Absent
Junb
Pattern NameModiscoSignificance
metacluster_1/pattern_140.0308722
Absent
Mafk
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00150179
Absent
Maz
Pattern NameModiscoSignificance
metacluster_1/pattern_03.53265e-05
metacluster_1/pattern_150.05326419999999999
metacluster_1/pattern_190.0158268
Absent
Dbp
Pattern NameModiscoSignificance
metacluster_1/pattern_90.037077099999999995
Absent
Six1
Pattern NameModiscoSignificance
metacluster_1/pattern_127.22178e-07
Absent
Gata1
Pattern NameModiscoSignificance
metacluster_1/pattern_131.57349e-06
Absent
Bach2
Pattern NameModiscoSignificance
metacluster_1/pattern_140.000357806
Absent
Spdef
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0472405
Absent
Six4
Pattern NameModiscoSignificance
metacluster_1/pattern_128.0197e-07
Absent
Six2
Pattern NameModiscoSignificance
metacluster_1/pattern_125.651530000000001e-10
Absent
Elf4
Pattern NameModiscoSignificance
metacluster_1/pattern_150.00438572
Absent
Jun
Pattern NameModiscoSignificance
metacluster_1/pattern_90.049070800000000005
metacluster_1/pattern_141.33031e-05
Absent
Nkx2-2
Pattern NameModiscoSignificance
metacluster_1/pattern_150.049636900000000005
Absent
Nfil3
Pattern NameModiscoSignificance
metacluster_1/pattern_90.043260900000000005
Absent
Nfyc
Pattern NameModiscoSignificance
metacluster_1/pattern_85.987719999999999e-10
Absent
Yy1
Pattern NameModiscoSignificance
metacluster_1/pattern_197.12115e-06
Absent
Zfx
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00738296
metacluster_1/pattern_30.0402674
metacluster_1/pattern_190.00375787
Absent
Wt1
Pattern NameModiscoSignificance
metacluster_1/pattern_02.91752e-05
metacluster_1/pattern_190.016346799999999998
Absent
Foxj1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0215987
Absent
Mecom
Pattern NameModiscoSignificance
metacluster_1/pattern_130.05865359999999999
Absent
Obox3
Pattern NameModiscoSignificance
metacluster_1/pattern_70.00708619
Absent
Fosl2
Pattern NameModiscoSignificance
metacluster_1/pattern_147.2948899999999995e-06
Absent
Fosb
Pattern NameModiscoSignificance
metacluster_1/pattern_146.484349999999999e-06
Absent
Gata3
Pattern NameModiscoSignificance
metacluster_1/pattern_130.034452699999999996
Absent
Mafb
Pattern NameModiscoSignificance
metacluster_1/pattern_90.05413250000000001
metacluster_1/pattern_140.00482453
Absent
Tef
Pattern NameModiscoSignificance
metacluster_1/pattern_90.0527939
Absent
Nfya
Pattern NameModiscoSignificance
metacluster_1/pattern_82.85004e-09
Absent
Zic1
Pattern NameModiscoSignificance
metacluster_1/pattern_20.00687765
Absent
Spi1
Pattern NameModiscoSignificance
metacluster_1/pattern_150.0590336
Absent
Maf
Pattern NameModiscoSignificance
metacluster_1/pattern_140.011865700000000002
Absent
Bach1
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00190816
Absent
Rfx3
Pattern NameModiscoSignificance
metacluster_1/pattern_110.00191512
Absent
Pbx3
Pattern NameModiscoSignificance
metacluster_1/pattern_87.18715e-06
Absent
Gata5
Pattern NameModiscoSignificance
metacluster_1/pattern_130.00623762
Absent
Zfp281
Pattern NameModiscoSignificance
metacluster_1/pattern_00.00395466
Absent
Maff
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00452978
Absent
Tal1
Pattern NameModiscoSignificance
metacluster_1/pattern_131.59382e-07
Absent
Batf
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00150179
Absent
Taf1
Pattern NameModiscoSignificance
metacluster_1/pattern_193.69173e-06
Absent
Mafg
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00333697
Absent
Tead1
Pattern NameModiscoSignificance
metacluster_1/pattern_170.0214915
Absent
Jund
Pattern NameModiscoSignificance
metacluster_1/pattern_140.0189883
Absent
Gata6
Pattern NameModiscoSignificance
metacluster_1/pattern_130.000122809
Absent
Foxq1
Pattern NameModiscoSignificance
metacluster_1/pattern_60.0386458
Absent
Gata2
Pattern NameModiscoSignificance
metacluster_1/pattern_137.9691e-08
Absent
Tead4
Pattern NameModiscoSignificance
metacluster_1/pattern_170.011681
Absent
Mafa
Pattern NameModiscoSignificance
metacluster_1/pattern_140.00392762
Absent
Nfatc1
Pattern NameModiscoSignificance
metacluster_1/pattern_140.0194678
Absent
Mxi1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.0326238
metacluster_1/pattern_30.00210776
metacluster_1/pattern_150.00446813
metacluster_1/pattern_190.058236199999999995
Absent
Gata4
Pattern NameModiscoSignificance
metacluster_1/pattern_130.000458075
Absent
Rfx1
Pattern NameModiscoSignificance
metacluster_1/pattern_00.058174000000000003
metacluster_1/pattern_30.0013899000000000001
metacluster_1/pattern_111.42263e-07
Absent
Rest
Pattern NameModiscoSignificance
metacluster_1/pattern_182.1304e-22
Absent
Rfx7
Pattern NameModiscoSignificance
metacluster_1/pattern_110.000806394
Absent
Tfap2c
Pattern NameModiscoSignificance
metacluster_1/pattern_00.018953099999999997
metacluster_1/pattern_30.036586900000000006
Absent
Nfyb
Pattern NameModiscoSignificance
metacluster_1/pattern_81.54246e-15
Absent
Rfx6
Pattern NameModiscoSignificance
metacluster_1/pattern_110.000109399
Absent
Unique Homer TFs: #15
TF NameModiscoHomer
ArntAbsent
Pattern NameHomerSignificance
motif19.motif0.05363830000000001
Tbx3Absent
Pattern NameHomerSignificance
motif15.motif0.042831
MycnAbsent
Pattern NameHomerSignificance
motif19.motif0.0370259
Npas2Absent
Pattern NameHomerSignificance
motif19.motif0.00494533
EomesAbsent
Pattern NameHomerSignificance
motif15.motif0.042831
MaxAbsent
Pattern NameHomerSignificance
motif19.motif0.025197999999999998
Tbx20Absent
Pattern NameHomerSignificance
motif15.motif0.042831
Bhlhe41Absent
Pattern NameHomerSignificance
motif19.motif0.018735400000000003
Tbx1Absent
Pattern NameHomerSignificance
motif15.motif0.056273699999999996
Tcfl5Absent
Pattern NameHomerSignificance
motif19.motif0.00991028
Zbtb1Absent
Pattern NameHomerSignificance
motif2.motif0.0224847
E2f6Absent
Pattern NameHomerSignificance
motif2.motif0.0408452
Tbr1Absent
Pattern NameHomerSignificance
motif15.motif0.044062
TAbsent
Pattern NameHomerSignificance
motif15.motif0.056273699999999996
Irf2Absent
Pattern NameHomerSignificance
motif9.motif0.029668200000000002