# Parameters
data_name = "Cebpb"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Cebpb: #48
| Cell type | Modisco | Homer |
|---|---|---|
| SKLTL_Muscle;8wks;D;En |
Significance: 0.013123500000000001 |
Significance: 0.055129899999999996 |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.00212701 |
Significance: 0.00548505 |
| AML;D;En |
Significance: 0.00518072 |
Significance: 4.2760600000000005e-05 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.0373647 |
Significance: 0.00129018 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.00448016 |
Significance: 0.0535779 |
| DC_LPS;6h;A;GEO |
Significance: 0.00851508 |
Significance: 0.00740681 |
| BSPHL;A;CL |
Significance: 0.00308678 |
Significance: 4.5804300000000005e-05 |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.00606558 |
Significance: 0.029674400000000004 |
| DC_LPS;2h;A;GEO |
Significance: 0.010809000000000001 |
Significance: 0.012875799999999998 |
| NTRPHL;A;CL |
Significance: 0.0596692 |
Significance: 0.059038400000000005 |
| DC_pBMD;A;GEO |
Significance: 0.0107927 |
Significance: 0.024274599999999997 |
| NIH3T3;D;En |
Significance: 0.00365566 |
Significance: 0.000811593 |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0529155 |
Significance: 0.052702 |
| 3T3-L1;D;En |
Significance: 0.0522207 |
Significance: 0.023549900000000002 |
| DC_BMD;A;CL |
Significance: 0.000576227 |
Significance: 0.00133845 |
| MCRPHG;A;CL |
Significance: 0.00714947 |
Significance: 4.71162e-05 |
| iPV_NRN;A;GEO |
Significance: 0.0529481 |
Significance: 0.051271300000000006 |
| Adrenal;A;CL |
Significance: 0.00958867 |
Significance: 0.000279761 |
| Mammary_BptfKO;A;GEO |
Significance: 0.00281481 |
Significance: 0.0008105230000000001 |
| placenta;A;CL |
Significance: 0.00719875 |
Significance: 0.05816469999999999 |
| pMeg;A;En |
Significance: 0.00356785 |
Significance: 0.00012966399999999998 |
| MegP;A;En |
Significance: 0.00808089 |
Significance: 8.491690000000001e-05 |
| pCMP;A;CL |
Significance: 0.0023002 |
Significance: 0.0174968 |
| DC_LPS;4h;A;En |
Significance: 0.000826966 |
Significance: 0.025491800000000002 |
| pGMP;A;En |
Significance: 0.00277158 |
Significance: 2.92392e-05 |
| DC;A;En |
Significance: 0.00631807 |
Significance: 0.000712133 |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.00169024 |
Significance: 0.00218127 |
| LVR;8wks;D;GEO |
Significance: 0.00557376 |
Significance: 3.79998e-05 |
| LNG;8wks;D;GEO |
Significance: 0.00569282 |
Significance: 0.000753435 |
| 416B_MP;CD34+;D;GEO |
Significance: 0.00156035 |
Significance: 0.000587579 |
| WHL_BRN;8wks;D;GEO |
Significance: 0.0591312 |
Significance: 0.0570817 |
| NIH3T3_FBROBLST;D;En |
Significance: 0.00433116 |
Significance: 0.0005469730000000001 |
| FBRBLST;8wks;D;En |
Significance: 0.00716013 |
Significance: 0.00012555200000000002 |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.05777569999999999 |
Significance: 0.0397126 |
| LVR;8wks;D;En |
Significance: 0.00631426 |
Significance: 8.01432e-05 |
| NTRPHL;A;GEO |
Significance: 0.0122275 |
Significance: 0.0006369419999999999 |
| wES;LVR;E11.5;D.;En |
Significance: 0.000706232 |
Significance: 0.0198613 |
| LVR;P0;D;En |
Significance: 0.00401069 |
Significance: 0.000386509 |
| LNG;8wks;D;En |
Significance: 0.00723473 |
Significance: 7.28521e-05 |
| LNG;P0;D;En |
Significance: 0.00386943 |
Significance: 0.000917673 |
| Mammary_GLND;A;GEO |
Significance: 0.00224349 |
Significance: 0.019161 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.00690075 |
Significance: 8.597959999999999e-05 |
| Adipose;D;En |
Significance: 0.0330464 |
Significance: 4.81512e-05 |
| CRBLM;D;En |
Significance: 0.044493 |
Significance: 0.0402911 |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.0424164 |
Significance: 0.05542419999999999 |
| 416B_MP;CD34+;D;En |
Significance: 0.0008165480000000001 |
Significance: 8.01944e-05 |
| Muller;P12;D;En |
Significance: 0.00844255 |
Significance: 0.05308290000000001 |
| WHL_BRN;8wks;D;En |
Significance: 0.048710500000000004 |
Significance: 0.04918019999999999 |
Unique Cell types only TF-MoDISco finds Cebpb: #101
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.00192573 | Absent |
| naiveCD8;A;CL |
Significance: 0.054912 | Absent |
| memT;CD4+;A;CL |
Significance: 0.0514245 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0579284 | Absent |
| NK_SPLND;A;CL |
Significance: 0.0473509 | Absent |
| matureB;A;CL |
Significance: 0.0484898 | Absent |
| plasmaB;A;CL |
Significance: 0.0504693 | Absent |
| Mast;A;CL |
Significance: 0.032443099999999996 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.00242952 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0516607 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.05551180000000001 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0457396 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.055255099999999994 | Absent |
| Erythroblast;A;CL |
Significance: 0.0592125 | Absent |
| ES;MEF;A;CL |
Significance: 0.039027 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.0496032 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.05476659999999999 | Absent |
| LNG;A;CL |
Significance: 0.00507637 | Absent |
| Muscle;A;CL |
Significance: 0.0347314 | Absent |
| Heart;D;En |
Significance: 0.0006571389999999999 | Absent |
| Mammary;A;CL |
Significance: 0.0121291 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0318501 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.0323241 | Absent |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.040059 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.049022699999999995 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.055836000000000004 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.0405478 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.0367099 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.05986180000000001 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.055774199999999996 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0286144 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0539941 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.0571749 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.0528495 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.0382017 | Absent |
| ILC1;A;CL |
Significance: 0.0597245 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.0391699 | Absent |
| ILC2;A;CL |
Significance: 0.0379798 | Absent |
| wCH12_drug;A;CL |
Significance: 0.058266399999999996 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.0568557 | Absent |
| ES;v6.5;A;GEO |
Significance: 0.05395369999999999 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0437233 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.0433051 | Absent |
| ILC1;A;GEO |
Significance: 0.0554196 | Absent |
| ILC2;A;GEO |
Significance: 0.056519900000000005 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.054237400000000005 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.0583769 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.05663049999999999 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0351484 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0470476 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0497875 | Absent |
| iNKT;A;GEO |
Significance: 0.055218399999999994 | Absent |
| aB;A;GEO |
Significance: 0.0442168 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.04494190000000001 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.0581317 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.05426709999999999 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 0.05140830000000001 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.000127167 | Absent |
| NPC;F129;A;GEO |
Significance: 0.0414935 | Absent |
| NPC;G4;A;GEO |
Significance: 0.057395 | Absent |
| NPC;Ch13;A;GEO |
Significance: 0.057738 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.0456745 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.0355649 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.0369592 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.0522005 | Absent |
| Corticotrope;A;GEO |
Significance: 0.00178791 | Absent |
| Melanotrope;A;GEO |
Significance: 0.034805800000000005 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.052096300000000005 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.0086785 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.056197800000000006 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0570636 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.056908400000000005 | Absent |
| KDNY;P0;D;En |
Significance: 0.0145821 | Absent |
| KDNY;8wks;D;En |
Significance: 0.049775599999999996 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.000559892 | Absent |
| Heart;8wks;D;En |
Significance: 0.000592614 | Absent |
| Heart;P0;D;En |
Significance: 0.058107400000000003 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.0465964 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.0590774 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.053063599999999995 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.0470078 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.0521734 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 0.0564395 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.0587004 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.0590034 | Absent |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.058411199999999996 | Absent |
| Md_BRN;D;En |
Significance: 0.05870269999999999 | Absent |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.0554102 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.0437223 | Absent |
| wES;limb;E14.5;D;En |
Significance: 0.0477815 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.0531019 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.05777519999999999 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0553903 | Absent |
| LRG_INTSTN;8wks;D;En |
Significance: 0.04567430000000001 | Absent |
| STMCH;P0;D;En |
Significance: 0.016785599999999998 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.0406222 | Absent |
| CH12.LX;D;En |
Significance: 0.055195400000000006 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 0.059315599999999996 | Absent |
| MEL;D;En |
Significance: 0.0163523 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.000177564 | Absent |
| MN1;D;En |
Significance: 0.0466397 | Absent |
Unique Cell types only Homer finds Cebpb: #3
| Cell type | Modisco | Homer |
|---|---|---|
| restingB;A;CL | Absent |
Significance: 0.0587057 |
| ePyramidal_NRN;A;GEO | Absent |
Significance: 0.0458534 |
| aB_LPS+IL21;A;CL | Absent |
Significance: 0.05838009999999999 |
