In [1]:
# Parameters
data_name = "placenta;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_61-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_61-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"
In [2]:
from matlas.reports import display_metadata
load data from labcluster
Using TensorFlow backend.
2019-08-30 18:53:28,802 [WARNING] git-lfs not installed
In [3]:
display_metadata(data_name, perf_file, reportfile, sheetname)
    Sample Information
    MetaData NameDescription
    Cell typeplacenta
    Cell GroupOther Tissues
    Experiment NameATAC
    Experiment GroupCasellas Lab
    Pipeline Output
    replicateNaïve overlap peaksIDR peaksTSS enrichment (< 8 is very poor <10 is low)Final number of unique mapping, dup-filtered, chrM filtered readsNumber of reads in called peak regionsFraction of reads in called peak regionsNumber of reads in promoter regionsFraction of reads in promoter regionsNumber of reads in enhancer regionsFraction of reads in enhancer regions
    rep11169975394912.16841082881928230.04714664530.11414674810.3588
    rep2116997539498.34813986315234269230.08636404790.0914144068480.3616
    rep31169975394911.1197107672118187560.076211657880.108538644460.3595
    Modelling Metadata
    MetricValue
    auPRC0.6163
    Calibrated Recall at 50% FDR0.201
    Number of Positive Examples in Test Data67987
    Number of Negative Examples in Test Data8002864
    Imbalance Ratio in Test Data0.0084
    Test Chromosomeschr2, chr3, chr19
In [4]:
from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns
In [5]:
display_denovo_patterns(data_name, modisco_root=modisco_root)
TF-MoDISco is using the TensorFlow backend.
The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco
Click here for Denovo Patterns by TF-MoDISco: #24
Pattern NameTF Name(s)Modisco
metacluster_0/pattern_0 # seqlets: 2759 SequenceContrib ScoresHyp_Contrib Scores
Sp4, Klf3, Sp2, Sp3, Sp1, Klf7, Klf4, Klf8, Klf12, Klf1,

Klf6, E2f4, Egr1, Klf5, Egr2, Zbtb17, E2f1, Zfp281, Zbtb1, Zfp740, Zfx,

Sall4, Sp5
metacluster_0/pattern_1 # seqlets: 2557 SequenceContrib ScoresHyp_Contrib Scores
Wt1, Maz, Klf15, Rela, Srebf2, Gata1, Mxi1, E2f3, Fli1
metacluster_0/pattern_2 # seqlets: 1842 SequenceContrib ScoresHyp_Contrib Scores
Tead4, Tead2, Tead1
metacluster_0/pattern_3 # seqlets: 1340 SequenceContrib ScoresHyp_Contrib Scores
Nfyb, Nfya, Nfyc, Foxi1, Pbx3
metacluster_0/pattern_4 # seqlets: 1263 SequenceContrib ScoresHyp_Contrib Scores
Gabpa, Elk1, Ets1, Erg, Elk4, Elk3, Etv5, Fev, Elf1, Etv4,

Etv1, Etv6, Etv2, Elf2, Etv3, XP_911724.4, Spi1, Ehf, Elf5, Elf4, Spdef,

Elf3, Spib, Spic
metacluster_0/pattern_5 # seqlets: 1216 SequenceContrib ScoresHyp_Contrib Scores
Nrf1
metacluster_0/pattern_6 # seqlets: 1160 SequenceContrib ScoresHyp_Contrib Scores
Fosl1, Junb, Fosb, Atf3, Fosl2, Fos, Jun, Jund, Jdp2, Batf,

Bach2, Nfe2l2, Bach1, Nfe2, Mafa
metacluster_0/pattern_7 # seqlets: 1158 SequenceContrib ScoresHyp_Contrib Scores
Tfap2a, Tfap2c, Tfap2b, Tfap2e
metacluster_0/pattern_8 # seqlets: 1100 SequenceContrib ScoresHyp_Contrib Scores
Cebpa, Cebpb, Cebpd, Dbp, Hlf, Nfil3, Cebpg, Ddit3, Atf4, Cebpe,

Tef
metacluster_0/pattern_9 # seqlets: 1027 SequenceContrib ScoresHyp_Contrib Scores
Ctcfl, Ctcf
metacluster_0/pattern_10 # seqlets: 868 SequenceContrib ScoresHyp_Contrib Scores
Atf7, Creb1, Creb5, Atf2, Atf1, Crem, Mafb, Rxrb
metacluster_0/pattern_11 # seqlets: 853 SequenceContrib ScoresHyp_Contrib Scores
Nr2f6, Nr2c2, Rxra, Ppara, Nr2f1, Pparg, Nr1h3, Nr4a2, Nr2e3, Hnf4g,

Hnf4a, Nr2c1, Nr5a2, Esrrb, Esrrg, Rara, Tcf7l2, Lef1, Nr5a1, Rxrg, Rarg,

Rarb, Sox3, Tcf7, Esrra
metacluster_0/pattern_12 # seqlets: 691 SequenceContrib ScoresHyp_Contrib Scores
Tfec, Tfeb, Usf1, Mitf, Arntl, Tfe3, Srebf1, Usf2, Bhlhe40, Mlx,

Clock, Arnt, Npas2, Tcfl5, Creb3l2, Bhlhe41, Xbp1, Mlxip, Arnt2
metacluster_0/pattern_13 # seqlets: 593 SequenceContrib ScoresHyp_Contrib Scores
Taf1, Yy1, Zfp42, Rfx1
metacluster_0/pattern_14 # seqlets: 411 SequenceContrib ScoresHyp_Contrib Scores
Thap11, Zfp143, Tbx2
metacluster_0/pattern_15 # seqlets: 391 SequenceContrib ScoresHyp_Contrib Scores
Grhl2
metacluster_0/pattern_16 # seqlets: 364 SequenceContrib ScoresHyp_Contrib Scores
Rfx2, Rfx3, Rfx4, Rfx6, Rfx7, Sox2
metacluster_0/pattern_17 # seqlets: 232 SequenceContrib ScoresHyp_Contrib Scores
Gata4, Gata2, Tal1, Gata6, Gata3, Gata5, Mecom
metacluster_0/pattern_18 # seqlets: 109 SequenceContrib ScoresHyp_Contrib Scores
Zbtb33
metacluster_0/pattern_19 # seqlets: 102 SequenceContrib ScoresHyp_Contrib Scores
Irf8, Irf7, Irf1, Irf2, Stat2, Stat1, Prdm1, Irf3, Irf9, Irf4,

Irf5, Irf6
metacluster_0/pattern_20 # seqlets: 77 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_21 # seqlets: 81 SequenceContrib ScoresHyp_Contrib Scores
Mef2d, Mef2a, Mef2c
metacluster_0/pattern_22 # seqlets: 44 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_23 # seqlets: 38 SequenceContrib ScoresHyp_Contrib Scores
Foxa2, Foxd1, Foxc1, Foxk1, Foxg1, Foxa1, Foxj2, Foxj3, Foxp2, Foxo3,

Foxm1, Foxa3, Foxo4, Foxc2, Foxd3, Foxb1, Foxl1, Foxj1, Gm5294
Click here for Motifs by TF-MoDISco: #205
TF NamePattern(s)
Sp4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00118713
metacluster_0/pattern_10.0175043
Klf3
Pattern NameModiscoSignificance
metacluster_0/pattern_02.29735e-06
metacluster_0/pattern_13.4891599999999996e-05
Sp2
Pattern NameModiscoSignificance
metacluster_0/pattern_04.38209e-06
metacluster_0/pattern_16.343330000000001e-07
metacluster_0/pattern_130.0074936000000000004
metacluster_0/pattern_180.043458
Sp3
Pattern NameModiscoSignificance
metacluster_0/pattern_07.1604399999999995e-06
metacluster_0/pattern_15.3693300000000006e-08
metacluster_0/pattern_130.00608729
Sp1
Pattern NameModiscoSignificance
metacluster_0/pattern_07.81947e-05
metacluster_0/pattern_10.0394191
metacluster_0/pattern_130.020452099999999997
Klf7
Pattern NameModiscoSignificance
metacluster_0/pattern_05.59382e-05
metacluster_0/pattern_10.0175043
Klf4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0015329
metacluster_0/pattern_10.00114152
Klf8
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00011407399999999999
metacluster_0/pattern_10.0141596
Klf12
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0020386
metacluster_0/pattern_10.0394191
Klf1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00444031
metacluster_0/pattern_10.0597465
Klf6
Pattern NameModiscoSignificance
metacluster_0/pattern_00.000232218
metacluster_0/pattern_10.00114152
E2f4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00037302
metacluster_0/pattern_10.0297577
Egr1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.025365000000000002
metacluster_0/pattern_10.029852899999999998
Klf5
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00444031
metacluster_0/pattern_11.14506e-05
Egr2
Pattern NameModiscoSignificance
metacluster_0/pattern_00.028651
metacluster_0/pattern_10.0160498
Zbtb17
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00766231
metacluster_0/pattern_11.73692e-05
metacluster_0/pattern_130.0136317
E2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00967718
Zfp281
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0303608
metacluster_0/pattern_10.00769133
Zbtb1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0370423
Zfp740
Pattern NameModiscoSignificance
metacluster_0/pattern_00.037957199999999996
Zfx
Pattern NameModiscoSignificance
metacluster_0/pattern_00.03995580000000001
metacluster_0/pattern_10.010301799999999998
metacluster_0/pattern_50.0160546
metacluster_0/pattern_130.0174434
metacluster_0/pattern_180.043458
Sall4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.03995580000000001
metacluster_0/pattern_10.000480534
Sp5
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0544192
metacluster_0/pattern_16.10086e-09
Wt1
Pattern NameModiscoSignificance
metacluster_0/pattern_13.81913e-07
metacluster_0/pattern_130.023344
Maz
Pattern NameModiscoSignificance
metacluster_0/pattern_13.1552099999999997e-06
Klf15
Pattern NameModiscoSignificance
metacluster_0/pattern_13.19573e-05
Rela
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00355193
Srebf2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0113014
metacluster_0/pattern_120.00311915
Gata1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0175043
metacluster_0/pattern_170.00225789
Mxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.029852899999999998
E2f3
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0537431
Fli1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.059811800000000005
metacluster_0/pattern_40.00129865
Tead4
Pattern NameModiscoSignificance
metacluster_0/pattern_20.00060115
Tead2
Pattern NameModiscoSignificance
metacluster_0/pattern_20.00239089
Tead1
Pattern NameModiscoSignificance
metacluster_0/pattern_20.00568186
Nfyb
Pattern NameModiscoSignificance
metacluster_0/pattern_37.592059999999999e-15
Nfya
Pattern NameModiscoSignificance
metacluster_0/pattern_31.20621e-11
Nfyc
Pattern NameModiscoSignificance
metacluster_0/pattern_31.20621e-11
Foxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_31.84706e-07
Pbx3
Pattern NameModiscoSignificance
metacluster_0/pattern_34.27196e-06
Gabpa
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000933747
Elk1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000895428
Ets1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0012735
Erg
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0012735
Elk4
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00111082
Elk3
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000822052
Etv5
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00036788300000000006
Fev
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000497508
Elf1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000933747
Etv4
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00157231
Etv1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00111082
Etv6
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00405699
Etv2
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00129865
Elf2
Pattern NameModiscoSignificance
metacluster_0/pattern_40.010946899999999999
Etv3
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00164592
XP_911724.4
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00171239
Spi1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.022269900000000002
Ehf
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0116015
Elf5
Pattern NameModiscoSignificance
metacluster_0/pattern_40.030680400000000004
Elf4
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00635299
Spdef
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0184272
Elf3
Pattern NameModiscoSignificance
metacluster_0/pattern_40.041119
Spib
Pattern NameModiscoSignificance
metacluster_0/pattern_40.023745
metacluster_0/pattern_190.027848400000000002
Spic
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0271343
Nrf1
Pattern NameModiscoSignificance
metacluster_0/pattern_59.31159e-06
Fosl1
Pattern NameModiscoSignificance
metacluster_0/pattern_61.49653e-07
metacluster_0/pattern_100.0349514
Junb
Pattern NameModiscoSignificance
metacluster_0/pattern_60.02106
Fosb
Pattern NameModiscoSignificance
metacluster_0/pattern_61.4697700000000001e-06
Atf3
Pattern NameModiscoSignificance
metacluster_0/pattern_61.4697700000000001e-06
metacluster_0/pattern_100.0485653
Fosl2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.000640194
metacluster_0/pattern_100.0583678
Fos
Pattern NameModiscoSignificance
metacluster_0/pattern_61.6797299999999998e-06
Jun
Pattern NameModiscoSignificance
metacluster_0/pattern_60.049460000000000004
metacluster_0/pattern_100.029331700000000002
Jund
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00775674
Jdp2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0005562830000000001
metacluster_0/pattern_100.000686495
Batf
Pattern NameModiscoSignificance
metacluster_0/pattern_60.026085900000000002
Bach2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00280378
Nfe2l2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00817642
Bach1
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00775674
Nfe2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00789037
Mafa
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0474712
Tfap2a
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00509144
Tfap2c
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00612014
Tfap2b
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00917493
Tfap2e
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0126
Cebpa
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00706075
Cebpb
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00719875
Cebpd
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0115658
Dbp
Pattern NameModiscoSignificance
metacluster_0/pattern_80.018345900000000002
metacluster_0/pattern_100.0456185
metacluster_0/pattern_120.035727800000000004
Hlf
Pattern NameModiscoSignificance
metacluster_0/pattern_80.000954717
metacluster_0/pattern_100.0534505
metacluster_0/pattern_120.0343459
Nfil3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00101878
metacluster_0/pattern_100.00652886
Cebpg
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0104241
Ddit3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00506722
Atf4
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0204512
Cebpe
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0115658
Tef
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0358319
metacluster_0/pattern_100.017025
Ctcfl
Pattern NameModiscoSignificance
metacluster_0/pattern_98.39175e-13
Ctcf
Pattern NameModiscoSignificance
metacluster_0/pattern_91.20709e-10
Atf7
Pattern NameModiscoSignificance
metacluster_0/pattern_105.2413999999999997e-05
Creb1
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000631323
Creb5
Pattern NameModiscoSignificance
metacluster_0/pattern_109.15699e-06
Atf2
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000214938
Atf1
Pattern NameModiscoSignificance
metacluster_0/pattern_100.039154
metacluster_0/pattern_120.0178832
Crem
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0008510560000000001
Mafb
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0124136
Rxrb
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0368939
metacluster_0/pattern_111.45165e-06
Nr2f6
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0438811
Nr2c2
Pattern NameModiscoSignificance
metacluster_0/pattern_112.0974900000000002e-08
Rxra
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Ppara
Pattern NameModiscoSignificance
metacluster_0/pattern_112.4600099999999996e-06
Nr2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_113.49718e-06
Pparg
Pattern NameModiscoSignificance
metacluster_0/pattern_111.7704000000000002e-05
Nr1h3
Pattern NameModiscoSignificance
metacluster_0/pattern_111.68194e-05
Nr4a2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00904131
Nr2e3
Pattern NameModiscoSignificance
metacluster_0/pattern_110.000875386
Hnf4g
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00201401
Hnf4a
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0156007
Nr2c1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.052517799999999996
Nr5a2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.055096400000000004
Esrrb
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Esrrg
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0346191
Rara
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Tcf7l2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0367927
Lef1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0372886
Nr5a1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0438811
Rxrg
Pattern NameModiscoSignificance
metacluster_0/pattern_110.046655199999999994
Rarg
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Rarb
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Sox3
Pattern NameModiscoSignificance
metacluster_0/pattern_110.055171300000000006
Tcf7
Pattern NameModiscoSignificance
metacluster_0/pattern_110.055171300000000006
Esrra
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0562887
Tfec
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00304954
Tfeb
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00152093
Usf1
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00516202
Mitf
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00232745
Arntl
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00841036
Tfe3
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00362301
Srebf1
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00179528
Usf2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00431797
Bhlhe40
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00590286
Mlx
Pattern NameModiscoSignificance
metacluster_0/pattern_120.032781
Clock
Pattern NameModiscoSignificance
metacluster_0/pattern_120.050004
Arnt
Pattern NameModiscoSignificance
metacluster_0/pattern_120.044567
Npas2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00257115
Tcfl5
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00547657
Creb3l2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.0206904
Bhlhe41
Pattern NameModiscoSignificance
metacluster_0/pattern_120.012738
Xbp1
Pattern NameModiscoSignificance
metacluster_0/pattern_120.0487275
Mlxip
Pattern NameModiscoSignificance
metacluster_0/pattern_120.058339199999999994
Arnt2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.058339199999999994
Taf1
Pattern NameModiscoSignificance
metacluster_0/pattern_135.26867e-06
Yy1
Pattern NameModiscoSignificance
metacluster_0/pattern_136.681849999999999e-06
Zfp42
Pattern NameModiscoSignificance
metacluster_0/pattern_130.0136317
Rfx1
Pattern NameModiscoSignificance
metacluster_0/pattern_130.0136317
metacluster_0/pattern_168.10876e-08
Thap11
Pattern NameModiscoSignificance
metacluster_0/pattern_147.48014e-22
Zfp143
Pattern NameModiscoSignificance
metacluster_0/pattern_145.4846699999999996e-21
Tbx2
Pattern NameModiscoSignificance
metacluster_0/pattern_144.5579300000000006e-12
Grhl2
Pattern NameModiscoSignificance
metacluster_0/pattern_157.939299999999999e-06
Rfx2
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0142252
Rfx3
Pattern NameModiscoSignificance
metacluster_0/pattern_160.00106384
Rfx4
Pattern NameModiscoSignificance
metacluster_0/pattern_162.31578e-05
Rfx6
Pattern NameModiscoSignificance
metacluster_0/pattern_160.00015309999999999998
Rfx7
Pattern NameModiscoSignificance
metacluster_0/pattern_160.000487391
Sox2
Pattern NameModiscoSignificance
metacluster_0/pattern_160.058337400000000005
Gata4
Pattern NameModiscoSignificance
metacluster_0/pattern_170.010679799999999998
Gata2
Pattern NameModiscoSignificance
metacluster_0/pattern_170.000113566
Tal1
Pattern NameModiscoSignificance
metacluster_0/pattern_170.00040326
Gata6
Pattern NameModiscoSignificance
metacluster_0/pattern_170.00151479
Gata3
Pattern NameModiscoSignificance
metacluster_0/pattern_170.0317356
Gata5
Pattern NameModiscoSignificance
metacluster_0/pattern_170.00831743
Mecom
Pattern NameModiscoSignificance
metacluster_0/pattern_170.0366099
Zbtb33
Pattern NameModiscoSignificance
metacluster_0/pattern_181.57582e-05
Irf8
Pattern NameModiscoSignificance
metacluster_0/pattern_192.4670999999999998e-05
Irf7
Pattern NameModiscoSignificance
metacluster_0/pattern_192.4670999999999998e-05
Irf1
Pattern NameModiscoSignificance
metacluster_0/pattern_192.4670999999999998e-05
Irf2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00926417
Stat2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.000130856
Stat1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00016649299999999998
Prdm1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.000168191
Irf3
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0481297
Irf9
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00110125
Irf4
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00271449
metacluster_0/pattern_230.031791700000000006
Irf5
Pattern NameModiscoSignificance
metacluster_0/pattern_190.024718900000000002
Irf6
Pattern NameModiscoSignificance
metacluster_0/pattern_190.058231399999999996
Mef2d
Pattern NameModiscoSignificance
metacluster_0/pattern_212.0390700000000002e-10
Mef2a
Pattern NameModiscoSignificance
metacluster_0/pattern_219.02344e-05
Mef2c
Pattern NameModiscoSignificance
metacluster_0/pattern_212.4e-07
Foxa2
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00857837
Foxd1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00112604
Foxc1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00857837
Foxk1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00853811
Foxg1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.0599011
Foxa1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00480462
Foxj2
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00857837
Foxj3
Pattern NameModiscoSignificance
metacluster_0/pattern_230.010531299999999999
Foxp2
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00532643
Foxo3
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00727897
Foxm1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00798146
Foxa3
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00853811
Foxo4
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00853811
Foxc2
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00857837
Foxd3
Pattern NameModiscoSignificance
metacluster_0/pattern_230.0102216
Foxb1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.024346400000000004
Foxl1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.031791700000000006
Foxj1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.031791700000000006
Gm5294
Pattern NameModiscoSignificance
metacluster_0/pattern_230.031791700000000006
In [6]:
display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)
Number of CISBP TFs obtained by TF-MoDISco and Homer
Shared TFs between TF-MoDISco and Homer: #122
TF NameModiscoHomer
Klf7
Pattern NameModiscoSignificance
metacluster_0/pattern_05.59382e-05
metacluster_0/pattern_10.0175043
Pattern NameHomerSignificance
motif1.motif0.000336621
Atf7
Pattern NameModiscoSignificance
metacluster_0/pattern_105.2413999999999997e-05
Pattern NameHomerSignificance
motif7.motif0.026902699999999998
motif17.motif0.0159463
Creb1
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000631323
Pattern NameHomerSignificance
motif7.motif0.023473400000000002
motif17.motif0.025593900000000003
Klf8
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00011407399999999999
metacluster_0/pattern_10.0141596
Pattern NameHomerSignificance
motif1.motif0.000909086
Junb
Pattern NameModiscoSignificance
metacluster_0/pattern_60.02106
Pattern NameHomerSignificance
motif2.motif0.0121446
Clock
Pattern NameModiscoSignificance
metacluster_0/pattern_120.050004
Pattern NameHomerSignificance
motif17.motif0.0263866
Nr4a2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00904131
Pattern NameHomerSignificance
motif12.motif0.015707299999999997
Esrra
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0562887
Pattern NameHomerSignificance
motif12.motif0.05183340000000001
Pparg
Pattern NameModiscoSignificance
metacluster_0/pattern_111.7704000000000002e-05
Pattern NameHomerSignificance
motif12.motif0.00012774
Nfyc
Pattern NameModiscoSignificance
metacluster_0/pattern_31.20621e-11
Pattern NameHomerSignificance
motif6.motif2.07569e-06
Fosl1
Pattern NameModiscoSignificance
metacluster_0/pattern_61.49653e-07
metacluster_0/pattern_100.0349514
Pattern NameHomerSignificance
motif2.motif0.011236
Elf1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000933747
Pattern NameHomerSignificance
motif5.motif0.000739473
Sp1
Pattern NameModiscoSignificance
metacluster_0/pattern_07.81947e-05
metacluster_0/pattern_10.0394191
metacluster_0/pattern_130.020452099999999997
Pattern NameHomerSignificance
motif1.motif0.00898295
Klf4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0015329
metacluster_0/pattern_10.00114152
Pattern NameHomerSignificance
motif1.motif0.00022051099999999998
Gabpa
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000933747
Pattern NameHomerSignificance
motif5.motif0.00080779
Rxra
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Pattern NameHomerSignificance
motif12.motif1.1398299999999999e-08
Nrf1
Pattern NameModiscoSignificance
metacluster_0/pattern_59.31159e-06
Pattern NameHomerSignificance
motif8.motif1.02165e-07
Ets1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0012735
Pattern NameHomerSignificance
motif5.motif0.00784121
Zfp143
Pattern NameModiscoSignificance
metacluster_0/pattern_145.4846699999999996e-21
Pattern NameHomerSignificance
motif4.motif4.4205199999999995e-08
Elk1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000895428
Pattern NameHomerSignificance
motif5.motif0.0002106
Usf2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00431797
Pattern NameHomerSignificance
motif17.motif0.0263866
Bhlhe40
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00590286
Pattern NameHomerSignificance
motif17.motif0.013056899999999998
Nr5a1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0438811
Pattern NameHomerSignificance
motif12.motif0.0200445
Nr2c1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.052517799999999996
Pattern NameHomerSignificance
motif12.motif0.00173103
Jund
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00775674
Pattern NameHomerSignificance
motif2.motif0.0010136000000000001
Npas2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00257115
Pattern NameHomerSignificance
motif17.motif0.00625604
E2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00967718
Pattern NameHomerSignificance
motif1.motif0.0329069
XP_911724.4
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00171239
Pattern NameHomerSignificance
motif5.motif0.00264114
Foxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_31.84706e-07
Pattern NameHomerSignificance
motif6.motif0.000770174
Erg
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0012735
Pattern NameHomerSignificance
motif5.motif0.00428914
Etv3
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00164592
Pattern NameHomerSignificance
motif5.motif0.00275975
Etv6
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00405699
Pattern NameHomerSignificance
motif5.motif0.0023166999999999997
Klf12
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0020386
metacluster_0/pattern_10.0394191
Pattern NameHomerSignificance
motif1.motif0.00898295
Arntl
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00841036
Pattern NameHomerSignificance
motif17.motif0.0191554
Crem
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0008510560000000001
Pattern NameHomerSignificance
motif7.motif0.0226523
motif17.motif0.025593900000000003
Cebpe
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0115658
Pattern NameHomerSignificance
motif9.motif0.0275053
Nr1h3
Pattern NameModiscoSignificance
metacluster_0/pattern_111.68194e-05
Pattern NameHomerSignificance
motif12.motif8.05738e-05
Fosl2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.000640194
metacluster_0/pattern_100.0583678
Pattern NameHomerSignificance
motif2.motif0.000782928
Nr2c2
Pattern NameModiscoSignificance
metacluster_0/pattern_112.0974900000000002e-08
Pattern NameHomerSignificance
motif12.motif5.28271e-07
Mlx
Pattern NameModiscoSignificance
metacluster_0/pattern_120.032781
Pattern NameHomerSignificance
motif17.motif0.0166848
Tfec
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00304954
Pattern NameHomerSignificance
motif17.motif0.00380101
Creb3l2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.0206904
Pattern NameHomerSignificance
motif17.motif0.0457212
Elk4
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00111082
Pattern NameHomerSignificance
motif5.motif0.00233988
Hnf4g
Pattern NameModiscoSignificance
metacluster_0/pattern_110.00201401
Pattern NameHomerSignificance
motif12.motif0.00900684
Fev
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000497508
Pattern NameHomerSignificance
motif5.motif0.00886849
Atf4
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0204512
Pattern NameHomerSignificance
motif9.motif0.033801599999999994
Nr2f1
Pattern NameModiscoSignificance
metacluster_0/pattern_113.49718e-06
Pattern NameHomerSignificance
motif12.motif5.6007799999999996e-05
Tcfl5
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00547657
Pattern NameHomerSignificance
motif17.motif0.0150107
Mafb
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0124136
Pattern NameHomerSignificance
motif2.motif0.028970599999999996
Fosb
Pattern NameModiscoSignificance
metacluster_0/pattern_61.4697700000000001e-06
Pattern NameHomerSignificance
motif2.motif0.00011714
Tead4
Pattern NameModiscoSignificance
metacluster_0/pattern_20.00060115
Pattern NameHomerSignificance
motif3.motif0.00598561
Elf5
Pattern NameModiscoSignificance
metacluster_0/pattern_40.030680400000000004
Pattern NameHomerSignificance
motif5.motif0.00617159
Nfil3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00101878
metacluster_0/pattern_100.00652886
Pattern NameHomerSignificance
motif9.motif0.0275053
Srebf2
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0113014
metacluster_0/pattern_120.00311915
Pattern NameHomerSignificance
motif17.motif0.00625604
Mafa
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0474712
Pattern NameHomerSignificance
motif2.motif0.0188234
Zbtb33
Pattern NameModiscoSignificance
metacluster_0/pattern_181.57582e-05
Pattern NameHomerSignificance
motif15.motif0.00358068
Elf2
Pattern NameModiscoSignificance
metacluster_0/pattern_40.010946899999999999
Pattern NameHomerSignificance
motif5.motif0.039878699999999996
Spdef
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0184272
Pattern NameHomerSignificance
motif5.motif0.0129476
Etv5
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00036788300000000006
Pattern NameHomerSignificance
motif5.motif0.000739473
Esrrb
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Pattern NameHomerSignificance
motif12.motif0.05183340000000001
Tfe3
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00362301
Pattern NameHomerSignificance
motif17.motif0.00330517
Sp3
Pattern NameModiscoSignificance
metacluster_0/pattern_07.1604399999999995e-06
metacluster_0/pattern_15.3693300000000006e-08
metacluster_0/pattern_130.00608729
Pattern NameHomerSignificance
motif1.motif3.6529699999999996e-06
Cebpa
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00706075
Pattern NameHomerSignificance
motif9.motif0.0183096
Elf3
Pattern NameModiscoSignificance
metacluster_0/pattern_40.041119
Pattern NameHomerSignificance
motif5.motif0.014302700000000002
Ehf
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0116015
Pattern NameHomerSignificance
motif5.motif0.0298535
Esrrg
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0346191
Pattern NameHomerSignificance
motif12.motif0.05183340000000001
Egr1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.025365000000000002
metacluster_0/pattern_10.029852899999999998
Pattern NameHomerSignificance
motif1.motif0.023686099999999998
Nr2f6
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0438811
Pattern NameHomerSignificance
motif12.motif8.981010000000001e-08
Klf15
Pattern NameModiscoSignificance
metacluster_0/pattern_13.19573e-05
Pattern NameHomerSignificance
motif1.motif0.0421982
Nr5a2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.055096400000000004
Pattern NameHomerSignificance
motif12.motif0.05183340000000001
Bhlhe41
Pattern NameModiscoSignificance
metacluster_0/pattern_120.012738
Pattern NameHomerSignificance
motif17.motif0.0242057
Bach2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00280378
Pattern NameHomerSignificance
motif2.motif1.07155e-05
Elf4
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00635299
Pattern NameHomerSignificance
motif5.motif0.00177714
Creb5
Pattern NameModiscoSignificance
metacluster_0/pattern_109.15699e-06
Pattern NameHomerSignificance
motif7.motif0.0164287
Klf1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00444031
metacluster_0/pattern_10.0597465
Pattern NameHomerSignificance
motif1.motif0.045300400000000005
Nfe2l2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00817642
Pattern NameHomerSignificance
motif2.motif4.89196e-05
Pbx3
Pattern NameModiscoSignificance
metacluster_0/pattern_34.27196e-06
Pattern NameHomerSignificance
motif6.motif0.000642361
Klf3
Pattern NameModiscoSignificance
metacluster_0/pattern_02.29735e-06
metacluster_0/pattern_13.4891599999999996e-05
Pattern NameHomerSignificance
motif1.motif7.5701e-06
Klf5
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00444031
metacluster_0/pattern_11.14506e-05
Pattern NameHomerSignificance
motif1.motif0.009168700000000002
Tbx2
Pattern NameModiscoSignificance
metacluster_0/pattern_144.5579300000000006e-12
Pattern NameHomerSignificance
motif4.motif2.16823e-05
Arnt
Pattern NameModiscoSignificance
metacluster_0/pattern_120.044567
Pattern NameHomerSignificance
motif17.motif0.0513315
Tead1
Pattern NameModiscoSignificance
metacluster_0/pattern_20.00568186
Pattern NameHomerSignificance
motif3.motif0.0221289
Dbp
Pattern NameModiscoSignificance
metacluster_0/pattern_80.018345900000000002
metacluster_0/pattern_100.0456185
metacluster_0/pattern_120.035727800000000004
Pattern NameHomerSignificance
motif9.motif0.033801599999999994
Tfeb
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00152093
Pattern NameHomerSignificance
motif17.motif0.000653018
Tef
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0358319
metacluster_0/pattern_100.017025
Pattern NameHomerSignificance
motif9.motif0.0244383
Jdp2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.0005562830000000001
metacluster_0/pattern_100.000686495
Pattern NameHomerSignificance
motif2.motif0.00013178299999999998
motif7.motif0.0580505
motif9.motif0.058635
Elk3
Pattern NameModiscoSignificance
metacluster_0/pattern_40.000822052
Pattern NameHomerSignificance
motif5.motif0.00045338
Yy1
Pattern NameModiscoSignificance
metacluster_0/pattern_136.681849999999999e-06
Pattern NameHomerSignificance
motif18.motif0.0236595
Tead2
Pattern NameModiscoSignificance
metacluster_0/pattern_20.00239089
Pattern NameHomerSignificance
motif3.motif0.0110646
Hnf4a
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0156007
Pattern NameHomerSignificance
motif12.motif0.041847300000000004
Etv1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00111082
Pattern NameHomerSignificance
motif5.motif0.000939704
Ppara
Pattern NameModiscoSignificance
metacluster_0/pattern_112.4600099999999996e-06
Pattern NameHomerSignificance
motif12.motif2.9134899999999998e-05
Klf6
Pattern NameModiscoSignificance
metacluster_0/pattern_00.000232218
metacluster_0/pattern_10.00114152
Pattern NameHomerSignificance
motif1.motif0.00022051099999999998
Cebpg
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0104241
Pattern NameHomerSignificance
motif9.motif0.00987777
Rxrb
Pattern NameModiscoSignificance
metacluster_0/pattern_100.0368939
metacluster_0/pattern_111.45165e-06
Pattern NameHomerSignificance
motif12.motif3.95438e-08
Atf1
Pattern NameModiscoSignificance
metacluster_0/pattern_100.039154
metacluster_0/pattern_120.0178832
Pattern NameHomerSignificance
motif7.motif0.0504602
motif17.motif0.0208093
Nfya
Pattern NameModiscoSignificance
metacluster_0/pattern_31.20621e-11
Pattern NameHomerSignificance
motif6.motif1.2828299999999998e-06
Sp4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00118713
metacluster_0/pattern_10.0175043
Pattern NameHomerSignificance
motif1.motif0.0250547
Nr2e3
Pattern NameModiscoSignificance
metacluster_0/pattern_110.000875386
Pattern NameHomerSignificance
motif12.motif0.00331978
Thap11
Pattern NameModiscoSignificance
metacluster_0/pattern_147.48014e-22
Pattern NameHomerSignificance
motif4.motif2.22825e-08
Sp2
Pattern NameModiscoSignificance
metacluster_0/pattern_04.38209e-06
metacluster_0/pattern_16.343330000000001e-07
metacluster_0/pattern_130.0074936000000000004
metacluster_0/pattern_180.043458
Pattern NameHomerSignificance
motif1.motif7.17802e-07
Bach1
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00775674
Pattern NameHomerSignificance
motif2.motif0.00024599400000000003
Taf1
Pattern NameModiscoSignificance
metacluster_0/pattern_135.26867e-06
Pattern NameHomerSignificance
motif18.motif0.0555923
Jun
Pattern NameModiscoSignificance
metacluster_0/pattern_60.049460000000000004
metacluster_0/pattern_100.029331700000000002
Pattern NameHomerSignificance
motif2.motif0.0263839
motif9.motif0.0411866
Srebf1
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00179528
Pattern NameHomerSignificance
motif17.motif0.02166
Ctcfl
Pattern NameModiscoSignificance
metacluster_0/pattern_98.39175e-13
Pattern NameHomerSignificance
motif11.motif1.94619e-05
Zbtb17
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00766231
metacluster_0/pattern_11.73692e-05
metacluster_0/pattern_130.0136317
Pattern NameHomerSignificance
motif1.motif0.010998
Hlf
Pattern NameModiscoSignificance
metacluster_0/pattern_80.000954717
metacluster_0/pattern_100.0534505
metacluster_0/pattern_120.0343459
Pattern NameHomerSignificance
motif9.motif0.0588659
Atf3
Pattern NameModiscoSignificance
metacluster_0/pattern_61.4697700000000001e-06
metacluster_0/pattern_100.0485653
Pattern NameHomerSignificance
motif2.motif0.00016617700000000002
Fos
Pattern NameModiscoSignificance
metacluster_0/pattern_61.6797299999999998e-06
Pattern NameHomerSignificance
motif2.motif2.47397e-05
Etv4
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00157231
Pattern NameHomerSignificance
motif5.motif0.00617159
Usf1
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00516202
Pattern NameHomerSignificance
motif17.motif0.0159406
Mitf
Pattern NameModiscoSignificance
metacluster_0/pattern_120.00232745
Pattern NameHomerSignificance
motif17.motif0.00141323
Batf
Pattern NameModiscoSignificance
metacluster_0/pattern_60.026085900000000002
Pattern NameHomerSignificance
motif2.motif0.00879996
E2f4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.00037302
metacluster_0/pattern_10.0297577
Pattern NameHomerSignificance
motif1.motif0.00313135
Cebpd
Pattern NameModiscoSignificance
metacluster_0/pattern_80.0115658
Pattern NameHomerSignificance
motif9.motif0.0183096
Fli1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.059811800000000005
metacluster_0/pattern_40.00129865
Pattern NameHomerSignificance
motif5.motif0.00275257
Cebpb
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00719875
Pattern NameHomerSignificance
motif9.motif0.05816469999999999
Atf2
Pattern NameModiscoSignificance
metacluster_0/pattern_100.000214938
Pattern NameHomerSignificance
motif7.motif0.0306329
motif17.motif0.0217096
Nfyb
Pattern NameModiscoSignificance
metacluster_0/pattern_37.592059999999999e-15
Pattern NameHomerSignificance
motif6.motif9.683040000000001e-09
Ctcf
Pattern NameModiscoSignificance
metacluster_0/pattern_91.20709e-10
Pattern NameHomerSignificance
motif11.motif1.36642e-07
Nfe2
Pattern NameModiscoSignificance
metacluster_0/pattern_60.00789037
Pattern NameHomerSignificance
motif2.motif2.47397e-05
Unique TF-MoDISco TFs: #83
TF NameModiscoHomer
Foxo4
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00853811
Absent
Gata1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0175043
metacluster_0/pattern_170.00225789
Absent
Gata6
Pattern NameModiscoSignificance
metacluster_0/pattern_170.00151479
Absent
Sp5
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0544192
metacluster_0/pattern_16.10086e-09
Absent
Spib
Pattern NameModiscoSignificance
metacluster_0/pattern_40.023745
metacluster_0/pattern_190.027848400000000002
Absent
Zfx
Pattern NameModiscoSignificance
metacluster_0/pattern_00.03995580000000001
metacluster_0/pattern_10.010301799999999998
metacluster_0/pattern_50.0160546
metacluster_0/pattern_130.0174434
metacluster_0/pattern_180.043458
Absent
Irf8
Pattern NameModiscoSignificance
metacluster_0/pattern_192.4670999999999998e-05
Absent
Mef2a
Pattern NameModiscoSignificance
metacluster_0/pattern_219.02344e-05
Absent
Rarg
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Absent
Zfp740
Pattern NameModiscoSignificance
metacluster_0/pattern_00.037957199999999996
Absent
E2f3
Pattern NameModiscoSignificance
metacluster_0/pattern_10.0537431
Absent
Spi1
Pattern NameModiscoSignificance
metacluster_0/pattern_40.022269900000000002
Absent
Tfap2b
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00917493
Absent
Foxc1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00857837
Absent
Irf9
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00110125
Absent
Foxb1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.024346400000000004
Absent
Prdm1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.000168191
Absent
Rara
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Absent
Rfx3
Pattern NameModiscoSignificance
metacluster_0/pattern_160.00106384
Absent
Stat1
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00016649299999999998
Absent
Foxj1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.031791700000000006
Absent
Zfp281
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0303608
metacluster_0/pattern_10.00769133
Absent
Tcf7l2
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0367927
Absent
Irf3
Pattern NameModiscoSignificance
metacluster_0/pattern_190.0481297
Absent
Foxd3
Pattern NameModiscoSignificance
metacluster_0/pattern_230.0102216
Absent
Foxk1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00853811
Absent
Rela
Pattern NameModiscoSignificance
metacluster_0/pattern_10.00355193
Absent
Gm5294
Pattern NameModiscoSignificance
metacluster_0/pattern_230.031791700000000006
Absent
Egr2
Pattern NameModiscoSignificance
metacluster_0/pattern_00.028651
metacluster_0/pattern_10.0160498
Absent
Rfx4
Pattern NameModiscoSignificance
metacluster_0/pattern_162.31578e-05
Absent
Gata5
Pattern NameModiscoSignificance
metacluster_0/pattern_170.00831743
Absent
Foxa1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00480462
Absent
Arnt2
Pattern NameModiscoSignificance
metacluster_0/pattern_120.058339199999999994
Absent
Gata4
Pattern NameModiscoSignificance
metacluster_0/pattern_170.010679799999999998
Absent
Rfx7
Pattern NameModiscoSignificance
metacluster_0/pattern_160.000487391
Absent
Foxc2
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00857837
Absent
Foxa3
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00853811
Absent
Irf2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00926417
Absent
Irf4
Pattern NameModiscoSignificance
metacluster_0/pattern_190.00271449
metacluster_0/pattern_230.031791700000000006
Absent
Sall4
Pattern NameModiscoSignificance
metacluster_0/pattern_00.03995580000000001
metacluster_0/pattern_10.000480534
Absent
Sox2
Pattern NameModiscoSignificance
metacluster_0/pattern_160.058337400000000005
Absent
Foxp2
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00532643
Absent
Rfx1
Pattern NameModiscoSignificance
metacluster_0/pattern_130.0136317
metacluster_0/pattern_168.10876e-08
Absent
Spic
Pattern NameModiscoSignificance
metacluster_0/pattern_40.0271343
Absent
Zbtb1
Pattern NameModiscoSignificance
metacluster_0/pattern_00.0370423
Absent
Mxi1
Pattern NameModiscoSignificance
metacluster_0/pattern_10.029852899999999998
Absent
Irf1
Pattern NameModiscoSignificance
metacluster_0/pattern_192.4670999999999998e-05
Absent
Gata2
Pattern NameModiscoSignificance
metacluster_0/pattern_170.000113566
Absent
Sox3
Pattern NameModiscoSignificance
metacluster_0/pattern_110.055171300000000006
Absent
Gata3
Pattern NameModiscoSignificance
metacluster_0/pattern_170.0317356
Absent
Irf7
Pattern NameModiscoSignificance
metacluster_0/pattern_192.4670999999999998e-05
Absent
Etv2
Pattern NameModiscoSignificance
metacluster_0/pattern_40.00129865
Absent
Foxj2
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00857837
Absent
Tal1
Pattern NameModiscoSignificance
metacluster_0/pattern_170.00040326
Absent
Foxm1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00798146
Absent
Mef2c
Pattern NameModiscoSignificance
metacluster_0/pattern_212.4e-07
Absent
Foxl1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.031791700000000006
Absent
Rfx6
Pattern NameModiscoSignificance
metacluster_0/pattern_160.00015309999999999998
Absent
Foxg1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.0599011
Absent
Stat2
Pattern NameModiscoSignificance
metacluster_0/pattern_190.000130856
Absent
Tfap2c
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00612014
Absent
Lef1
Pattern NameModiscoSignificance
metacluster_0/pattern_110.0372886
Absent
Tfap2a
Pattern NameModiscoSignificance
metacluster_0/pattern_70.00509144
Absent
Maz
Pattern NameModiscoSignificance
metacluster_0/pattern_13.1552099999999997e-06
Absent
Irf6
Pattern NameModiscoSignificance
metacluster_0/pattern_190.058231399999999996
Absent
Ddit3
Pattern NameModiscoSignificance
metacluster_0/pattern_80.00506722
Absent
Foxa2
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00857837
Absent
Foxo3
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00727897
Absent
Grhl2
Pattern NameModiscoSignificance
metacluster_0/pattern_157.939299999999999e-06
Absent
Irf5
Pattern NameModiscoSignificance
metacluster_0/pattern_190.024718900000000002
Absent
Mef2d
Pattern NameModiscoSignificance
metacluster_0/pattern_212.0390700000000002e-10
Absent
Tcf7
Pattern NameModiscoSignificance
metacluster_0/pattern_110.055171300000000006
Absent
Rxrg
Pattern NameModiscoSignificance
metacluster_0/pattern_110.046655199999999994
Absent
Rarb
Pattern NameModiscoSignificance
metacluster_0/pattern_110.054093499999999996
Absent
Foxd1
Pattern NameModiscoSignificance
metacluster_0/pattern_230.00112604
Absent
Zfp42
Pattern NameModiscoSignificance
metacluster_0/pattern_130.0136317
Absent
Mlxip
Pattern NameModiscoSignificance
metacluster_0/pattern_120.058339199999999994
Absent
Xbp1
Pattern NameModiscoSignificance
metacluster_0/pattern_120.0487275
Absent
Tfap2e
Pattern NameModiscoSignificance
metacluster_0/pattern_70.0126
Absent
Foxj3
Pattern NameModiscoSignificance
metacluster_0/pattern_230.010531299999999999
Absent
Rfx2
Pattern NameModiscoSignificance
metacluster_0/pattern_160.0142252
Absent
Wt1
Pattern NameModiscoSignificance
metacluster_0/pattern_13.81913e-07
metacluster_0/pattern_130.023344
Absent
Mecom
Pattern NameModiscoSignificance
metacluster_0/pattern_170.0366099
Absent
Unique Homer TFs: #11
TF NameModiscoHomer
MafkAbsent
Pattern NameHomerSignificance
motif2.motif0.028970599999999996
Nr2f2Absent
Pattern NameHomerSignificance
motif12.motif0.05183340000000001
Zic2Absent
Pattern NameHomerSignificance
motif11.motif0.0522121
MaxAbsent
Pattern NameHomerSignificance
motif17.motif0.0202337
E2f7Absent
Pattern NameHomerSignificance
motif1.motif0.0421982
Gmeb1Absent
Pattern NameHomerSignificance
motif9.motif0.033801599999999994
Gmeb2Absent
Pattern NameHomerSignificance
motif9.motif0.028111900000000002
MycnAbsent
Pattern NameHomerSignificance
motif17.motif0.023253799999999998
MycAbsent
Pattern NameHomerSignificance
motif17.motif0.0411249
Zic3Absent
Pattern NameHomerSignificance
motif11.motif0.0522121
Mbd2Absent
Pattern NameHomerSignificance
motif16.motif0.00304622