# Parameters
data_name = "NTRPHL;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_22-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_22-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:45:12,346 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	neutrophils
Cell Group	Other Immune Cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	65216	45787	10.5329	56446758	6500567	0.1152	5874698	0.1041	17967566	0.3184

Modelling Metadata

Metric	Value
auPRC	0.6356
Calibrated Recall at 50% FDR	0.202
Number of Positive Examples in Test Data	53794
Number of Negative Examples in Test Data	8017057
Imbalance Ratio in Test Data	0.0067
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #21

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 6619 SequenceContrib ScoresHyp_Contrib Scores	Spib, Spi1, Irf8, Irf4, Spic, Etv2, Ets1, Etv6, Erg, Ehf, Etv4, Etv3, Elf3, Fli1, XP_911724.4, Elf4, Gabpa, Elk1, Elf1, Elf2, Elk4, Elk3, Prdm1, Irf3, Irf2, Etv5, Etv1, Elf5, Irf1, Fev, Spdef
metacluster_1/pattern_1 # seqlets: 3788 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Sp2, Klf3, Sp3, Sp1, Klf6, E2f4, Klf7, Klf4, Klf8, Klf1, Klf12, Egr1, Egr2, Zbtb17, Sp5, E2f1, Klf5, Zfp281, Egr3, Zfx
metacluster_1/pattern_2 # seqlets: 1886 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_3 # seqlets: 1529 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Atf7, Atf2, Jdp2, Creb5, Atf3, Crem, Atf1, Mafb, Fosl2, Fosl1, Jun, Nfil3, Tef, Hlf, Dbp, Cebpg, Tfe3, Jund, Gmeb2, Atf4, Creb3l2, Cebpb, Junb, Rorb
metacluster_1/pattern_4 # seqlets: 1501 SequenceContrib ScoresHyp_Contrib Scores	Cebpa, Cebpd, Ddit3, Cebpe, Pou3f3
metacluster_1/pattern_5 # seqlets: 1483 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_6 # seqlets: 1388 SequenceContrib ScoresHyp_Contrib Scores	Bach2, Fosb, Nfe2l2, Bach1, Nfe2, Fos, Batf, Mafk, Mafa, Mafg, Maf
metacluster_1/pattern_7 # seqlets: 1335 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_8 # seqlets: 924 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Rfx1, Zfp42, Wt1, Maz
metacluster_1/pattern_9 # seqlets: 680 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_10 # seqlets: 658 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfec, Tfeb, Mitf, Arntl, Usf2, Srebf1, Bhlhe40, Mlx, Clock, Arnt, Npas2, Srebf2, Tcfl5, Bhlhe41, Arnt2, Mlxip, Xbp1
metacluster_1/pattern_11 # seqlets: 560 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_12 # seqlets: 511 SequenceContrib ScoresHyp_Contrib Scores	Irf7, Stat1, Irf9, Stat2, Batf3
metacluster_1/pattern_13 # seqlets: 510 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_14 # seqlets: 229 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_15 # seqlets: 212 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_16 # seqlets: 204 SequenceContrib ScoresHyp_Contrib Scores	Nfkb1, Rela, Nfkb2, Relb, Rel
metacluster_1/pattern_17 # seqlets: 161 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_18 # seqlets: 110 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2
metacluster_1/pattern_19 # seqlets: 55 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_20 # seqlets: 30 SequenceContrib ScoresHyp_Contrib Scores	Nfia

Click here for Motifs by TF-MoDISco: #146

TF Name	Pattern(s)
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 2.8430400000000004e-06 metacluster_1/pattern_12 0.0009991289999999999 metacluster_1/pattern_13 0.033230199999999994
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000398862 metacluster_1/pattern_13 0.054105099999999996
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 4.5818699999999996e-05 metacluster_1/pattern_12 3.75237e-06 metacluster_1/pattern_13 0.0340518
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 5.64183e-05 metacluster_1/pattern_12 0.029095799999999998 metacluster_1/pattern_13 0.033230199999999994
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000398862 metacluster_1/pattern_13 0.0118288
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000525315
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0058728
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757 metacluster_1/pattern_11 0.0420147
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0099521 metacluster_1/pattern_11 0.0420147
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00799469 metacluster_1/pattern_11 0.0420147
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.016066399999999998
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0117533 metacluster_1/pattern_11 0.0420147
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0431798 metacluster_1/pattern_11 0.00248793
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0058728 metacluster_1/pattern_11 0.0263969
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.035459899999999996 metacluster_1/pattern_11 0.0263969
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00587973
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.007441800000000001
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0051467 metacluster_1/pattern_12 2.69482e-05
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00569724 metacluster_1/pattern_12 0.0006986939999999999
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.006852 metacluster_1/pattern_12 0.00125738
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.007196800000000001
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00799469
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.020663900000000002
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00862861 metacluster_1/pattern_12 5.957080000000001e-14
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.024105200000000004
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.035459899999999996
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00233768
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 8.60382e-06 metacluster_1/pattern_8 6.10787e-05 metacluster_1/pattern_17 0.000200947
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 1.2780999999999998e-05 metacluster_1/pattern_8 0.039794699999999995
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 1.54371e-05 metacluster_1/pattern_8 0.0007155169999999999 metacluster_1/pattern_17 0.00325765
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0009283469999999999 metacluster_1/pattern_8 0.000250049 metacluster_1/pattern_17 0.00235385
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0005487469999999999
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0005487469999999999
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0008310310000000001
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.017782
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00131391
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0587346
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0185347
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0447087
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.055281500000000004 metacluster_1/pattern_8 0.0500575
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0101761 metacluster_1/pattern_8 0.016919299999999998
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0153213
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0200052
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.025896199999999998
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0347361
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.058297400000000006
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0587346 metacluster_1/pattern_8 0.00318115 metacluster_1/pattern_17 0.00309348
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_2 1.3779999999999998e-11
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_2 8.61523e-10
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00038311800000000005
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_3 5.2358199999999996e-05
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000215897
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_3 5.2358199999999996e-05 metacluster_1/pattern_6 0.00212269
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_3 4.66329e-05
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00430286 metacluster_1/pattern_6 3.1446300000000004e-05
Crem	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00173588
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.015092700000000002 metacluster_1/pattern_10 0.0145487
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00275545 metacluster_1/pattern_6 0.052031299999999996
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00279567 metacluster_1/pattern_6 0.00109613
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00316501 metacluster_1/pattern_6 3.1446300000000004e-05
Jun	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0201731 metacluster_1/pattern_6 3.1446300000000004e-05
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00686804 metacluster_1/pattern_4 0.031927199999999996
Tef	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0106866 metacluster_1/pattern_4 0.013297
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0257885 metacluster_1/pattern_4 0.031192900000000003 metacluster_1/pattern_10 0.0378369
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_3 0.035988099999999995 metacluster_1/pattern_4 0.0236211 metacluster_1/pattern_10 0.038905800000000004
Cebpg	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0355206 metacluster_1/pattern_4 0.0047512
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.035988099999999995 metacluster_1/pattern_10 0.00306446
Jund	Pattern Name Modisco Significance metacluster_1/pattern_3 0.042917500000000004 metacluster_1/pattern_6 0.0269403
Gmeb2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.042917500000000004
Atf4	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0525279 metacluster_1/pattern_4 0.00616959
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0596692 metacluster_1/pattern_10 0.054163499999999996
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0596692 metacluster_1/pattern_4 0.00528144
Junb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0596692 metacluster_1/pattern_6 3.1446300000000004e-05
Rorb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0596692
Cebpa	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00673096
Cebpd	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00528144
Ddit3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00232538
Cebpe	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0157049
Pou3f3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0576943
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 1.75347e-08
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_6 3.1446300000000004e-05
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_6 3.1446300000000004e-05
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00020946799999999998
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.000125785
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00020946799999999998
Fos	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00030885900000000003
Batf	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00385253
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0274796
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_6 0.040951
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0423286
Maf	Pattern Name Modisco Significance metacluster_1/pattern_6 0.044366300000000004
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_7 1.1337100000000001e-13
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_7 2.43458e-11
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_7 5.440269999999999e-10
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_7 5.12928e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_7 5.22205e-06
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_8 5.47234e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_8 1.4801199999999998e-05
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.017743599999999998 metacluster_1/pattern_14 1.10901e-09
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0187042
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0310524
Maz	Pattern Name Modisco Significance metacluster_1/pattern_8 0.039794699999999995
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_9 4.603630000000001e-22
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_9 7.165739999999999e-21
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_9 6.63534e-14
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00409131
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00265047
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00117875
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0021098000000000002
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00548107
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00330404
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00227077
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00548107
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_10 0.026372700000000002
Clock	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0420894
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_10 0.034058
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00315195
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00321226
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00408832
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_10 0.013387
Arnt2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0420894
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_10 0.04810759999999999
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.054163499999999996
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_12 3.83379e-05
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_12 6.993220000000001e-05
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0006986939999999999
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000772417
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00656011
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000882345
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0355302
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_14 6.07901e-05
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000581583
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00121012
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_16 6.846559999999999e-07
Rela	Pattern Name Modisco Significance metacluster_1/pattern_16 3.91498e-05
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_16 8.21883e-06
Relb	Pattern Name Modisco Significance metacluster_1/pattern_16 3.13794e-05
Rel	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00550838
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_17 5.13698e-05
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_18 7.720390000000001e-05
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_20 1.08845e-05

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #98

TF Name	Modisco	Homer
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00265047	Pattern Name Homer Significance motif6.motif 0.022210499999999998
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757	Pattern Name Homer Significance motif1.motif 1.61806e-05
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_7 5.12928e-06	Pattern Name Homer Significance motif4.motif 0.000465794
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.024105200000000004	Pattern Name Homer Significance motif1.motif 0.011151399999999999
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00117875	Pattern Name Homer Significance motif6.motif 0.0366099
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_7 5.440269999999999e-10	Pattern Name Homer Significance motif4.motif 6.44721e-07
Jund	Pattern Name Modisco Significance metacluster_1/pattern_3 0.042917500000000004 metacluster_1/pattern_6 0.0269403	Pattern Name Homer Significance motif3.motif 0.03967
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_3 0.035988099999999995 metacluster_1/pattern_4 0.0236211 metacluster_1/pattern_10 0.038905800000000004	Pattern Name Homer Significance motif3.motif 0.052172699999999995
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0009283469999999999 metacluster_1/pattern_8 0.000250049 metacluster_1/pattern_17 0.00235385	Pattern Name Homer Significance motif2.motif 0.0127835
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000215897	Pattern Name Homer Significance motif3.motif 0.0332029 motif6.motif 0.0316632
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00020946799999999998	Pattern Name Homer Significance motif3.motif 0.0161442
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_6 3.1446300000000004e-05	Pattern Name Homer Significance motif3.motif 0.052172699999999995
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_17 5.13698e-05	Pattern Name Homer Significance motif12.motif 9.93411e-09
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0185347	Pattern Name Homer Significance motif2.motif 0.00454206
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00686804 metacluster_1/pattern_4 0.031927199999999996	Pattern Name Homer Significance motif3.motif 0.0463801
Cebpd	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00528144	Pattern Name Homer Significance motif3.motif 0.034499699999999994
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.054163499999999996	Pattern Name Homer Significance motif6.motif 0.050051599999999995
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000398862 metacluster_1/pattern_13 0.054105099999999996	Pattern Name Homer Significance motif1.motif 0.0339324
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00330404	Pattern Name Homer Significance motif6.motif 0.022210499999999998
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.007441800000000001	Pattern Name Homer Significance motif1.motif 0.000964065
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.035988099999999995 metacluster_1/pattern_10 0.00306446	Pattern Name Homer Significance motif6.motif 0.0268955
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0257885 metacluster_1/pattern_4 0.031192900000000003 metacluster_1/pattern_10 0.0378369	Pattern Name Homer Significance motif3.motif 0.05908290000000001
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.035459899999999996 metacluster_1/pattern_11 0.0263969	Pattern Name Homer Significance motif1.motif 0.0058357
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757	Pattern Name Homer Significance motif1.motif 0.000403325
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_7 1.1337100000000001e-13	Pattern Name Homer Significance motif4.motif 2.75365e-08
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0117533 metacluster_1/pattern_11 0.0420147	Pattern Name Homer Significance motif1.motif 0.00130764
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_2 8.61523e-10	Pattern Name Homer Significance motif10.motif 6.87607e-05
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0099521 metacluster_1/pattern_11 0.0420147	Pattern Name Homer Significance motif1.motif 0.0417444
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000398862 metacluster_1/pattern_13 0.0118288	Pattern Name Homer Significance motif1.motif 0.000575074
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000525315	Pattern Name Homer Significance motif1.motif 0.00350377
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0447087	Pattern Name Homer Significance motif2.motif 0.0500864
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0058728	Pattern Name Homer Significance motif1.motif 0.00912664
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757 metacluster_1/pattern_11 0.0420147	Pattern Name Homer Significance motif1.motif 0.00141053
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 1.2780999999999998e-05 metacluster_1/pattern_8 0.039794699999999995	Pattern Name Homer Significance motif2.motif 0.037344
Atf4	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0525279 metacluster_1/pattern_4 0.00616959	Pattern Name Homer Significance motif3.motif 0.059038400000000005
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_3 5.2358199999999996e-05	Pattern Name Homer Significance motif3.motif 0.052172699999999995 motif6.motif 0.0217796
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_8 5.47234e-06	Pattern Name Homer Significance motif11.motif 0.0006619460000000001
Tef	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0106866 metacluster_1/pattern_4 0.013297	Pattern Name Homer Significance motif3.motif 0.059038400000000005
Cebpe	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0157049	Pattern Name Homer Significance motif3.motif 0.0343681
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_7 5.22205e-06	Pattern Name Homer Significance motif4.motif 0.000282163
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 2.8430400000000004e-06 metacluster_1/pattern_12 0.0009991289999999999 metacluster_1/pattern_13 0.033230199999999994	Pattern Name Homer Significance motif1.motif 0.016579
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.000125785	Pattern Name Homer Significance motif3.motif 0.0143095
Crem	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00173588	Pattern Name Homer Significance motif3.motif 0.025343900000000003 motif6.motif 0.050051599999999995
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.055281500000000004 metacluster_1/pattern_8 0.0500575	Pattern Name Homer Significance motif2.motif 0.029881400000000002
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_10 0.026372700000000002	Pattern Name Homer Significance motif6.motif 0.0326346
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0187042	Pattern Name Homer Significance motif11.motif 0.0144793
Clock	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0420894	Pattern Name Homer Significance motif6.motif 0.0326346
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.017782	Pattern Name Homer Significance motif2.motif 0.0357202
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_7 2.43458e-11	Pattern Name Homer Significance motif4.motif 1.63886e-06
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00020946799999999998	Pattern Name Homer Significance motif3.motif 0.0143095
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_8 1.4801199999999998e-05	Pattern Name Homer Significance motif11.motif 8.80524e-06
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.016066399999999998	Pattern Name Homer Significance motif1.motif 0.00357354
Cebpa	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00673096	Pattern Name Homer Significance motif3.motif 0.034477499999999994
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.007196800000000001	Pattern Name Homer Significance motif1.motif 3.6334299999999995e-05
Fos	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00030885900000000003	Pattern Name Homer Significance motif3.motif 0.0223058
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_9 6.63534e-14	Pattern Name Homer Significance motif5.motif 6.76414e-05
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 4.5818699999999996e-05 metacluster_1/pattern_12 3.75237e-06 metacluster_1/pattern_13 0.0340518	Pattern Name Homer Significance motif1.motif 0.023762400000000003
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00548107	Pattern Name Homer Significance motif6.motif 0.022210499999999998
Cebpg	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0355206 metacluster_1/pattern_4 0.0047512	Pattern Name Homer Significance motif3.motif 0.0339541
Ddit3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00232538	Pattern Name Homer Significance motif3.motif 0.0223058
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_9 7.165739999999999e-21	Pattern Name Homer Significance motif5.motif 1.10645e-06
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00799469 metacluster_1/pattern_11 0.0420147	Pattern Name Homer Significance motif1.motif 0.00171391
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_2 1.3779999999999998e-11	Pattern Name Homer Significance motif10.motif 6.87607e-05
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.035459899999999996	Pattern Name Homer Significance motif1.motif 0.0249797
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_3 4.66329e-05	Pattern Name Homer Significance motif3.motif 0.04683590000000001 motif6.motif 0.00871147
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00279567 metacluster_1/pattern_6 0.00109613	Pattern Name Homer Significance motif3.motif 0.0332029
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00430286 metacluster_1/pattern_6 3.1446300000000004e-05	Pattern Name Homer Significance motif3.motif 0.052172699999999995 motif6.motif 0.032338099999999995
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0008310310000000001	Pattern Name Homer Significance motif2.motif 0.00454206
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0274796	Pattern Name Homer Significance motif3.motif 0.059038400000000005
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 1.75347e-08	Pattern Name Homer Significance motif8.motif 7.97312e-07
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_6 3.1446300000000004e-05	Pattern Name Homer Significance motif3.motif 0.010042200000000001
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00275545 metacluster_1/pattern_6 0.052031299999999996	Pattern Name Homer Significance motif6.motif 0.04083030000000001
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.015092700000000002 metacluster_1/pattern_10 0.0145487	Pattern Name Homer Significance motif3.motif 0.0505141 motif6.motif 0.04083030000000001
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0431798 metacluster_1/pattern_11 0.00248793	Pattern Name Homer Significance motif1.motif 0.00334837
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00799469	Pattern Name Homer Significance motif1.motif 0.000209131
Jun	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0201731 metacluster_1/pattern_6 3.1446300000000004e-05	Pattern Name Homer Significance motif3.motif 0.0215945
Gmeb2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.042917500000000004	Pattern Name Homer Significance motif3.motif 0.031209300000000002
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0021098000000000002	Pattern Name Homer Significance motif6.motif 0.0326346
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0058728 metacluster_1/pattern_11 0.0263969	Pattern Name Homer Significance motif1.motif 0.00115945
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00233768	Pattern Name Homer Significance motif2.motif 0.0144686
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00227077	Pattern Name Homer Significance motif6.motif 0.0326346
Batf	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00385253	Pattern Name Homer Significance motif3.motif 0.0389041
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_9 4.603630000000001e-22	Pattern Name Homer Significance motif5.motif 1.10645e-06
Cebpb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0596692 metacluster_1/pattern_4 0.00528144	Pattern Name Homer Significance motif3.motif 0.059038400000000005
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00316501 metacluster_1/pattern_6 3.1446300000000004e-05	Pattern Name Homer Significance motif3.motif 0.0292113
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00548107	Pattern Name Homer Significance motif6.motif 0.0520092
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757	Pattern Name Homer Significance motif1.motif 0.00152102
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00321226	Pattern Name Homer Significance motif6.motif 0.0595862
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_3 5.2358199999999996e-05 metacluster_1/pattern_6 0.00212269	Pattern Name Homer Significance motif3.motif 0.030451599999999995 motif6.motif 0.0217796
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00131391	Pattern Name Homer Significance motif2.motif 0.00454206
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.020663900000000002	Pattern Name Homer Significance motif1.motif 0.00316431
Junb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0596692 metacluster_1/pattern_6 3.1446300000000004e-05	Pattern Name Homer Significance motif3.motif 0.0400747
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 5.64183e-05 metacluster_1/pattern_12 0.029095799999999998 metacluster_1/pattern_13 0.033230199999999994	Pattern Name Homer Significance motif1.motif 0.0450686
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00587973	Pattern Name Homer Significance motif1.motif 0.000521135
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757	Pattern Name Homer Significance motif1.motif 1.44525e-05
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00038311800000000005	Pattern Name Homer Significance motif3.motif 0.034499699999999994 motif6.motif 0.0104428
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00205757	Pattern Name Homer Significance motif1.motif 0.00301844
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00409131	Pattern Name Homer Significance motif6.motif 0.0104428

Unique TF-MoDISco TFs: #48

TF Name	Modisco	Homer
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_10 0.034058	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0153213	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0587346 metacluster_1/pattern_8 0.00318115 metacluster_1/pattern_17 0.00309348	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000772417	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0355302	Absent
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.006852 metacluster_1/pattern_12 0.00125738	Absent
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.025896199999999998	Absent
Rel	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00550838	Absent
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 1.54371e-05 metacluster_1/pattern_8 0.0007155169999999999 metacluster_1/pattern_17 0.00325765	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_10 0.013387	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00408832	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000581583	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_6 0.040951	Absent
Maf	Pattern Name Modisco Significance metacluster_1/pattern_6 0.044366300000000004	Absent
Rorb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0596692	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00121012	Absent
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0423286	Absent
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_10 0.04810759999999999	Absent
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 8.60382e-06 metacluster_1/pattern_8 6.10787e-05 metacluster_1/pattern_17 0.000200947	Absent
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_16 8.21883e-06	Absent
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0005487469999999999	Absent
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0101761 metacluster_1/pattern_8 0.016919299999999998	Absent
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_12 3.83379e-05	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000882345	Absent
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0200052	Absent
Arnt2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0420894	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00315195	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.017743599999999998 metacluster_1/pattern_14 1.10901e-09	Absent
Pou3f3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0576943	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_8 0.039794699999999995	Absent
Relb	Pattern Name Modisco Significance metacluster_1/pattern_16 3.13794e-05	Absent
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_20 1.08845e-05	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0310524	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_18 7.720390000000001e-05	Absent
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_16 6.846559999999999e-07	Absent
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0006986939999999999	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00569724 metacluster_1/pattern_12 0.0006986939999999999	Absent
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00862861 metacluster_1/pattern_12 5.957080000000001e-14	Absent
Rela	Pattern Name Modisco Significance metacluster_1/pattern_16 3.91498e-05	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0596692 metacluster_1/pattern_10 0.054163499999999996	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0347361	Absent
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0051467 metacluster_1/pattern_12 2.69482e-05	Absent
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00656011	Absent
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0005487469999999999	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_14 6.07901e-05	Absent
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0587346	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_12 6.993220000000001e-05	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.058297400000000006	Absent

Unique Homer TFs: #3

TF Name	Modisco	Homer
Rxrb	Absent	Pattern Name Homer Significance motif6.motif 0.022210499999999998
Snai1	Absent	Pattern Name Homer Significance motif10.motif 0.0394164
Ahr	Absent	Pattern Name Homer Significance motif3.motif 0.0586572