# Parameters
data_name = "gamma_delta_TCR_M-S-;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_79-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_79-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:58:29,916 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	gamma delta TCR M/S -/-
Cell Group	T cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	70127	47441	7.9737	60333891	4794238	0.0795	4945956	0.082	19887928	0.3297

Modelling Metadata

Metric	Value
auPRC	0.6387
Calibrated Recall at 50% FDR	0.208
Number of Positive Examples in Test Data	49086
Number of Negative Examples in Test Data	8021765
Imbalance Ratio in Test Data	0.0061
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #19

Pattern Name	TF Name(s)	Modisco
metacluster_0/pattern_0 # seqlets: 4268 SequenceContrib ScoresHyp_Contrib Scores	Ets1, Erg, Fli1, Gabpa, Elk4, Elk1, Etv4, Etv2, Spi1, Etv5, Elk3, Fev, Etv6, Elf2, Etv3, Etv1, XP_911724.4, Spib, Elf1, Ehf, Elf4, Irf8, Elf5, Spic, Irf4, Elf3, Spdef, Zscan10
metacluster_0/pattern_1 # seqlets: 3625 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp4, Sp3, Klf3, Sp1, E2f4, Klf7, Klf4, Klf6, Klf8, Klf12, Klf1, Egr1, Zbtb17, Egr2, E2f1, Klf5, Sp5, Zfp281, Zfx, Zfp740, Egr3, Zbtb1, Sall4
metacluster_0/pattern_2 # seqlets: 1887 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_0/pattern_3 # seqlets: 1658 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Creb5, Jdp2, Atf7, Atf2, Atf1, Crem, Jun, Nfil3, Tef, Mafb, Fosl1, Dbp, Atf3, Cebpb, Gmeb2, Hlf, Jund, Rxrb, Junb, Fosl2, Cebpa, Gmeb1, Cebpd, Esr2, Cebpg
metacluster_0/pattern_4 # seqlets: 1543 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_0/pattern_5 # seqlets: 1415 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_0/pattern_6 # seqlets: 1390 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Irf7, Stat2, Prdm1, Irf9, Stat1, Irf5, Irf3, Irf6
metacluster_0/pattern_7 # seqlets: 1251 SequenceContrib ScoresHyp_Contrib Scores	Bach2, Fos, Nfe2l2, Fosb, Nfe2, Bach1, Batf, Mafa, Mafk
metacluster_0/pattern_8 # seqlets: 778 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Runx3, Cbfb, Gfi1b
metacluster_0/pattern_9 # seqlets: 756 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42, Rfx1, Mxi1, Wt1, Maz
metacluster_0/pattern_10 # seqlets: 645 SequenceContrib ScoresHyp_Contrib Scores	Thap11, Zfp143, Tbx2
metacluster_0/pattern_11 # seqlets: 588 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Usf2, Tfeb, Tfec, Arntl, Mitf, Tfe3, Srebf1, Bhlhe40, Clock, Mlx, Arnt, Npas2, Creb3l2, Srebf2, Tcfl5, Bhlhe41, Xbp1, Mycn, Max, Mlxip, Hes1, Myc
metacluster_0/pattern_12 # seqlets: 470 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_13 # seqlets: 355 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6, Sox2, Pou5f1
metacluster_0/pattern_14 # seqlets: 260 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2
metacluster_0/pattern_15 # seqlets: 238 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_0/pattern_16 # seqlets: 208 SequenceContrib ScoresHyp_Contrib Scores	Nfkb1, Rela, Nfkb2, Relb, Rel
metacluster_0/pattern_17 # seqlets: 105 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_18 # seqlets: 71 SequenceContrib ScoresHyp_Contrib Scores	Mef2d, Mef2c, Mef2a

Click here for Motifs by TF-MoDISco: #160

TF Name	Pattern(s)
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000916338 metacluster_0/pattern_17 0.05201569999999999
Erg	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0468068
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0565416
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0382588
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00107615 metacluster_0/pattern_17 0.0548784
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00103993 metacluster_0/pattern_17 0.032981
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0253238
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00010999700000000001
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0158558 metacluster_0/pattern_17 0.040179900000000005
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000310998 metacluster_0/pattern_17 0.00676012
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0147158
Fev	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000596853 metacluster_0/pattern_17 0.0337252
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00084836
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00714236
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00105959 metacluster_0/pattern_17 0.00821139
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00104303
Spib	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00107615 metacluster_0/pattern_6 0.00724626
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00172621 metacluster_0/pattern_17 0.04871930000000001
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00541035
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.004652600000000001
Irf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00629116 metacluster_0/pattern_6 6.0758900000000005e-05
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0182421
Spic	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0249481
Irf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00639634 metacluster_0/pattern_6 0.00111373
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0182421
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0189817
Zscan10	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0310666
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_1 4.31068e-06 metacluster_0/pattern_9 4.19985e-05 metacluster_0/pattern_17 0.00011463700000000001
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000991057 metacluster_0/pattern_9 0.0596035
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_1 8.55259e-06 metacluster_0/pattern_9 0.000904192 metacluster_0/pattern_17 0.00104257
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_1 1.3676300000000002e-05 metacluster_0/pattern_9 0.033249400000000005 metacluster_0/pattern_17 0.0120199
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000336682 metacluster_0/pattern_9 0.000468135 metacluster_0/pattern_17 0.00145441
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000414524
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000444524
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00995941
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00056231
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000768398
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0128984
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.034110699999999994
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.034110699999999994
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00526682 metacluster_0/pattern_9 0.012525 metacluster_0/pattern_17 0.0117851
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.034018900000000005
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0110713
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.013818899999999999
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0168006
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0200102
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_1 0.034110699999999994 metacluster_0/pattern_9 0.00209099 metacluster_0/pattern_15 0.00123172 metacluster_0/pattern_17 0.00296566
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_1 0.040279199999999994
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.041355300000000005
Zbtb1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0474621
Sall4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.05434119999999999
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_2 8.152039999999999e-07
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_2 2.62263e-05 metacluster_0/pattern_17 0.041569699999999994
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000180806 metacluster_0/pattern_11 0.0563374 metacluster_0/pattern_17 0.0337252
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_3 6.395109999999999e-05
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0006598060000000001 metacluster_0/pattern_7 0.000741296
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00013413700000000002
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000605951
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0322798 metacluster_0/pattern_11 0.0140817 metacluster_0/pattern_17 0.0337252
Crem	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0017234000000000001 metacluster_0/pattern_17 0.0549444
Jun	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0147642 metacluster_0/pattern_7 0.0450202
Nfil3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00519285
Tef	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00746944
Mafb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0108089 metacluster_0/pattern_7 0.053335400000000005
Fosl1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.015649299999999998 metacluster_0/pattern_7 0.0189621
Dbp	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0223383 metacluster_0/pattern_11 0.0563374
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0338079 metacluster_0/pattern_7 0.000118207
Cebpb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0286144
Gmeb2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0232438
Hlf	Pattern Name Modisco Significance metacluster_0/pattern_3 0.027474900000000003 metacluster_0/pattern_11 0.0588693
Jund	Pattern Name Modisco Significance metacluster_0/pattern_3 0.029168200000000002 metacluster_0/pattern_7 0.00228568
Rxrb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.029168299999999998
Junb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0322798 metacluster_0/pattern_7 0.0191181
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0338079 metacluster_0/pattern_7 0.0025122
Cebpa	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0338079
Gmeb1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0429698
Cebpd	Pattern Name Modisco Significance metacluster_0/pattern_3 0.047366399999999996
Esr2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.05215790000000001
Cebpg	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0541345
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_4 1.129e-08
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_5 2.96621e-14
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_5 7.085189999999999e-13
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_5 5.04034e-11
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_5 4.77562e-07
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_5 2.88905e-06
Irf1	Pattern Name Modisco Significance metacluster_0/pattern_6 1.37282e-07
Irf2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000788773
Irf7	Pattern Name Modisco Significance metacluster_0/pattern_6 3.14269e-05
Stat2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000519342
Prdm1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000575079
Irf9	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000575079
Stat1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000788773
Irf5	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0110309
Irf3	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0519711
Irf6	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0436972
Bach2	Pattern Name Modisco Significance metacluster_0/pattern_7 2.39363e-05
Fos	Pattern Name Modisco Significance metacluster_0/pattern_7 2.39363e-05
Nfe2l2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000118207
Fosb	Pattern Name Modisco Significance metacluster_0/pattern_7 8.53717e-05
Nfe2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000118207
Bach1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000483955
Batf	Pattern Name Modisco Significance metacluster_0/pattern_7 0.015404399999999999
Mafa	Pattern Name Modisco Significance metacluster_0/pattern_7 0.028227999999999996
Mafk	Pattern Name Modisco Significance metacluster_0/pattern_7 0.057579099999999994
Runx1	Pattern Name Modisco Significance metacluster_0/pattern_8 9.941700000000001e-05
Runx2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00649926
Runx3	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000633025
Cbfb	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00237301
Gfi1b	Pattern Name Modisco Significance metacluster_0/pattern_8 0.041699599999999996
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_9 3.4705199999999998e-06
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_9 6.39697e-06
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_9 0.011060500000000001
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0207134 metacluster_0/pattern_13 4.81577e-08
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0356149
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0356149 metacluster_0/pattern_17 0.0337252
Maz	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0401274
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_10 1.34854e-21
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_10 1.34854e-21
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_10 2.30533e-13
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00147762
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00160418 metacluster_0/pattern_17 0.015193
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_11 0.000931505
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00103738
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00698313
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_11 0.000928195
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00138835
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00420093
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_11 0.013118799999999998
Clock	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0329567
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0140817
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0563374
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00185705
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0419394
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00468277
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00899297
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_11 0.019412400000000003
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0308709
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0545135
Max	Pattern Name Modisco Significance metacluster_0/pattern_11 0.05964149999999999
Mlxip	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0545135
Hes1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0561446
Myc	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0563374
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00019345099999999997
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00148531
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_13 8.96129e-06
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_13 0.000211836
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_13 0.000431762
Sox2	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0597121
Pou5f1	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0273158
Pou2f2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00660397
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_15 8.13371e-05
Nfkb1	Pattern Name Modisco Significance metacluster_0/pattern_16 0.000245065
Rela	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00047432800000000004
Nfkb2	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00047432800000000004
Relb	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00339861
Rel	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00470931
Mef2d	Pattern Name Modisco Significance metacluster_0/pattern_18 1.00665e-05
Mef2c	Pattern Name Modisco Significance metacluster_0/pattern_18 2.5727199999999997e-05
Mef2a	Pattern Name Modisco Significance metacluster_0/pattern_18 0.00204261

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #73

TF Name	Modisco	Homer
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00107615 metacluster_0/pattern_17 0.0548784	Pattern Name Homer Significance motif2.motif 6.76845e-07
Mafb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0108089 metacluster_0/pattern_7 0.053335400000000005	Pattern Name Homer Significance motif11.motif 0.0515992
Nfe2l2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000118207	Pattern Name Homer Significance motif11.motif 0.05634580000000001
Nfe2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000118207	Pattern Name Homer Significance motif11.motif 0.0578654
Jund	Pattern Name Modisco Significance metacluster_0/pattern_3 0.029168200000000002 metacluster_0/pattern_7 0.00228568	Pattern Name Homer Significance motif11.motif 0.0476754
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0147158	Pattern Name Homer Significance motif2.motif 3.8275900000000004e-05
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0338079 metacluster_0/pattern_7 0.000118207	Pattern Name Homer Significance motif11.motif 0.0007611339999999999
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.034110699999999994	Pattern Name Homer Significance motif1.motif 0.025645499999999998
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0182421	Pattern Name Homer Significance motif2.motif 0.0202675
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_4 1.129e-08	Pattern Name Homer Significance motif9.motif 0.00158126
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00105959 metacluster_0/pattern_17 0.00821139	Pattern Name Homer Significance motif2.motif 3.4188899999999997e-07
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_9 0.011060500000000001	Pattern Name Homer Significance motif15.motif 0.0107875
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00010999700000000001	Pattern Name Homer Significance motif2.motif 0.00130725
Mafk	Pattern Name Modisco Significance metacluster_0/pattern_7 0.057579099999999994	Pattern Name Homer Significance motif11.motif 0.05634580000000001
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000414524	Pattern Name Homer Significance motif1.motif 0.00554987
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0565416	Pattern Name Homer Significance motif2.motif 1.62302e-05
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00526682 metacluster_0/pattern_9 0.012525 metacluster_0/pattern_17 0.0117851	Pattern Name Homer Significance motif1.motif 0.0158859
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_10 2.30533e-13	Pattern Name Homer Significance motif3.motif 0.000994302
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_1 1.3676300000000002e-05 metacluster_0/pattern_9 0.033249400000000005 metacluster_0/pattern_17 0.0120199	Pattern Name Homer Significance motif1.motif 3.27684e-05
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_10 1.34854e-21	Pattern Name Homer Significance motif3.motif 0.000994302
Zbtb1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0474621	Pattern Name Homer Significance motif1.motif 0.0389242
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.013818899999999999	Pattern Name Homer Significance motif1.motif 0.00850841
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_10 1.34854e-21	Pattern Name Homer Significance motif3.motif 0.000994302
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.034110699999999994	Pattern Name Homer Significance motif1.motif 0.013677600000000002
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_1 8.55259e-06 metacluster_0/pattern_9 0.000904192 metacluster_0/pattern_17 0.00104257	Pattern Name Homer Significance motif1.motif 9.30505e-06
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00172621 metacluster_0/pattern_17 0.04871930000000001	Pattern Name Homer Significance motif2.motif 0.00311125
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00104303	Pattern Name Homer Significance motif2.motif 8.895559999999999e-05
Bach2	Pattern Name Modisco Significance metacluster_0/pattern_7 2.39363e-05	Pattern Name Homer Significance motif11.motif 0.0130345
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000768398	Pattern Name Homer Significance motif1.motif 0.000447326
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000310998 metacluster_0/pattern_17 0.00676012	Pattern Name Homer Significance motif2.motif 5.59549e-08
Erg	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0468068	Pattern Name Homer Significance motif2.motif 1.04094e-06
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_5 5.04034e-11	Pattern Name Homer Significance motif4.motif 3.5648699999999995e-06
Fosl1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.015649299999999998 metacluster_0/pattern_7 0.0189621	Pattern Name Homer Significance motif11.motif 3.54949e-05
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_2 2.62263e-05 metacluster_0/pattern_17 0.041569699999999994	Pattern Name Homer Significance motif8.motif 0.000274368
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00056231	Pattern Name Homer Significance motif1.motif 0.00176435
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0189817	Pattern Name Homer Significance motif2.motif 0.0405728
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.004652600000000001	Pattern Name Homer Significance motif2.motif 0.00130018
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0338079 metacluster_0/pattern_7 0.0025122	Pattern Name Homer Significance motif11.motif 0.000249674
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_9 3.4705199999999998e-06	Pattern Name Homer Significance motif15.motif 0.000202056
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049	Pattern Name Homer Significance motif2.motif 3.8275900000000004e-05
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0182421	Pattern Name Homer Significance motif2.motif 0.022936500000000002
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0128984	Pattern Name Homer Significance motif1.motif 0.0153279
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_2 8.152039999999999e-07	Pattern Name Homer Significance motif8.motif 3.72052e-05
Batf	Pattern Name Modisco Significance metacluster_0/pattern_7 0.015404399999999999	Pattern Name Homer Significance motif11.motif 0.00509849
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0006598060000000001 metacluster_0/pattern_7 0.000741296	Pattern Name Homer Significance motif11.motif 0.0360362
Jun	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0147642 metacluster_0/pattern_7 0.0450202	Pattern Name Homer Significance motif11.motif 0.00010316399999999999
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_5 7.085189999999999e-13	Pattern Name Homer Significance motif4.motif 5.193859999999999e-06
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0382588	Pattern Name Homer Significance motif2.motif 0.00130725
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_5 4.77562e-07	Pattern Name Homer Significance motif4.motif 0.00111083
Fos	Pattern Name Modisco Significance metacluster_0/pattern_7 2.39363e-05	Pattern Name Homer Significance motif11.motif 0.00010697799999999999
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00995941	Pattern Name Homer Significance motif1.motif 0.0413421
Spic	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0249481	Pattern Name Homer Significance motif2.motif 0.00448674
Mafa	Pattern Name Modisco Significance metacluster_0/pattern_7 0.028227999999999996	Pattern Name Homer Significance motif11.motif 0.0244541
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000916338 metacluster_0/pattern_17 0.05201569999999999	Pattern Name Homer Significance motif2.motif 3.98007e-06
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0158558 metacluster_0/pattern_17 0.040179900000000005	Pattern Name Homer Significance motif2.motif 0.038118599999999996
Junb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0322798 metacluster_0/pattern_7 0.0191181	Pattern Name Homer Significance motif11.motif 0.00240397
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00541035	Pattern Name Homer Significance motif2.motif 0.00224741
Irf6	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0436972	Pattern Name Homer Significance motif2.motif 0.0358153
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_1 4.31068e-06 metacluster_0/pattern_9 4.19985e-05 metacluster_0/pattern_17 0.00011463700000000001	Pattern Name Homer Significance motif1.motif 9.30505e-06
Fev	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000596853 metacluster_0/pattern_17 0.0337252	Pattern Name Homer Significance motif2.motif 0.00224741
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00103993 metacluster_0/pattern_17 0.032981	Pattern Name Homer Significance motif2.motif 1.77955e-05
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_9 6.39697e-06	Pattern Name Homer Significance motif15.motif 3.01994e-07
Fosb	Pattern Name Modisco Significance metacluster_0/pattern_7 8.53717e-05	Pattern Name Homer Significance motif11.motif 0.00240397
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000444524	Pattern Name Homer Significance motif1.motif 0.000196949
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00084836	Pattern Name Homer Significance motif2.motif 0.00441475
Bach1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.000483955	Pattern Name Homer Significance motif11.motif 0.032035400000000006
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_5 2.96621e-14	Pattern Name Homer Significance motif4.motif 1.9603100000000002e-07
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000998049 metacluster_0/pattern_17 0.0253238	Pattern Name Homer Significance motif2.motif 0.00197597
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_5 2.88905e-06	Pattern Name Homer Significance motif4.motif 0.000266812
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000991057 metacluster_0/pattern_9 0.0596035	Pattern Name Homer Significance motif1.motif 0.023512
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000336682 metacluster_0/pattern_9 0.000468135 metacluster_0/pattern_17 0.00145441	Pattern Name Homer Significance motif1.motif 0.013677600000000002
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0110713	Pattern Name Homer Significance motif1.motif 0.0242275
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00714236	Pattern Name Homer Significance motif2.motif 0.0211137

Unique TF-MoDISco TFs: #87

TF Name	Modisco	Homer
Rela	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00047432800000000004	Absent
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.034018900000000005	Absent
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000605951	Absent
Rel	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00470931	Absent
Cebpb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0286144	Absent
Spib	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00107615 metacluster_0/pattern_6 0.00724626	Absent
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00138835	Absent
Irf9	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000575079	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0419394	Absent
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_13 8.96129e-06	Absent
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0563374	Absent
Prdm1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000575079	Absent
Zscan10	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0310666	Absent
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_13 0.000211836	Absent
Esr2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.05215790000000001	Absent
Irf3	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0519711	Absent
Gmeb1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0429698	Absent
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0140817	Absent
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00420093	Absent
Runx1	Pattern Name Modisco Significance metacluster_0/pattern_8 9.941700000000001e-05	Absent
Crem	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0017234000000000001 metacluster_0/pattern_17 0.0549444	Absent
Runx2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00649926	Absent
Irf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00639634 metacluster_0/pattern_6 0.00111373	Absent
Pou5f1	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0273158	Absent
Cbfb	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00237301	Absent
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0356149	Absent
Stat1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000788773	Absent
Maz	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0401274	Absent
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_11 0.000931505	Absent
Irf5	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0110309	Absent
Dbp	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0223383 metacluster_0/pattern_11 0.0563374	Absent
Mef2d	Pattern Name Modisco Significance metacluster_0/pattern_18 1.00665e-05	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_11 0.013118799999999998	Absent
Gfi1b	Pattern Name Modisco Significance metacluster_0/pattern_8 0.041699599999999996	Absent
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00148531	Absent
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00185705	Absent
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_13 0.000431762	Absent
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0168006	Absent
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_11 0.000928195	Absent
Nfkb1	Pattern Name Modisco Significance metacluster_0/pattern_16 0.000245065	Absent
Mef2a	Pattern Name Modisco Significance metacluster_0/pattern_18 0.00204261	Absent
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00468277	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00660397	Absent
Tef	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00746944	Absent
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00013413700000000002	Absent
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0545135	Absent
Cebpg	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0541345	Absent
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0308709	Absent
Nfil3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00519285	Absent
Rxrb	Pattern Name Modisco Significance metacluster_0/pattern_3 0.029168299999999998	Absent
Irf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00629116 metacluster_0/pattern_6 6.0758900000000005e-05	Absent
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00160418 metacluster_0/pattern_17 0.015193	Absent
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0322798 metacluster_0/pattern_11 0.0140817 metacluster_0/pattern_17 0.0337252	Absent
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_3 6.395109999999999e-05	Absent
Clock	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0329567	Absent
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00019345099999999997	Absent
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0356149 metacluster_0/pattern_17 0.0337252	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_15 8.13371e-05	Absent
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_1 0.040279199999999994	Absent
Irf1	Pattern Name Modisco Significance metacluster_0/pattern_6 1.37282e-07	Absent
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0200102	Absent
Relb	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00339861	Absent
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00103738	Absent
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00147762	Absent
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0207134 metacluster_0/pattern_13 4.81577e-08	Absent
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00698313	Absent
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_1 0.034110699999999994 metacluster_0/pattern_9 0.00209099 metacluster_0/pattern_15 0.00123172 metacluster_0/pattern_17 0.00296566	Absent
Nfkb2	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00047432800000000004	Absent
Irf7	Pattern Name Modisco Significance metacluster_0/pattern_6 3.14269e-05	Absent
Stat2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000519342	Absent
Sall4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.05434119999999999	Absent
Hlf	Pattern Name Modisco Significance metacluster_0/pattern_3 0.027474900000000003 metacluster_0/pattern_11 0.0588693	Absent
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000180806 metacluster_0/pattern_11 0.0563374 metacluster_0/pattern_17 0.0337252	Absent
Mef2c	Pattern Name Modisco Significance metacluster_0/pattern_18 2.5727199999999997e-05	Absent
Mlxip	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0545135	Absent
Cebpd	Pattern Name Modisco Significance metacluster_0/pattern_3 0.047366399999999996	Absent
Sox2	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0597121	Absent
Hes1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0561446	Absent
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.041355300000000005	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_11 0.019412400000000003	Absent
Irf2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.000788773	Absent
Myc	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0563374	Absent
Max	Pattern Name Modisco Significance metacluster_0/pattern_11 0.05964149999999999	Absent
Cebpa	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0338079	Absent
Gmeb2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0232438	Absent
Runx3	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000633025	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00899297	Absent

Unique Homer TFs: #7

TF Name	Modisco	Homer
Zic2	Absent	Pattern Name Homer Significance motif8.motif 0.0351767
Mafg	Absent	Pattern Name Homer Significance motif11.motif 0.0460639
Klf15	Absent	Pattern Name Homer Significance motif1.motif 0.0413421
Zic3	Absent	Pattern Name Homer Significance motif8.motif 0.044691800000000004
Snai1	Absent	Pattern Name Homer Significance motif8.motif 0.00892111
E2f6	Absent	Pattern Name Homer Significance motif1.motif 0.0413318
Maff	Absent	Pattern Name Homer Significance motif11.motif 0.05600599999999999