# Parameters
data_name = "matureB;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_8-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_8-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:41:46,060 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	mature B cells
Cell Group	B cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	97614	76627	10.5385	50732280	8181583	0.1613	6134591	0.121	16099388	0.3175

Modelling Metadata

Metric	Value
auPRC	0.5881
Calibrated Recall at 50% FDR	0.232
Number of Positive Examples in Test Data	83836
Number of Negative Examples in Test Data	7987015
Imbalance Ratio in Test Data	0.0104
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #24

Pattern Name	TF Name(s)	Modisco
metacluster_0/pattern_0 # seqlets: 6925 SequenceContrib ScoresHyp_Contrib Scores	Spib, Spi1, Irf8, Irf4, Etv2, Ets1, Spic, Etv6, Erg, Etv4, Etv3, Fli1, Gabpa, Elk1, XP_911724.4, Ehf, Elf1, Elf3, Elf4, Elk4, Elk3, Elf2, Etv1, Etv5, Elf5, Prdm1, Irf3, Irf2, Fev, Irf1, Spdef
metacluster_0/pattern_1 # seqlets: 4961 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_0/pattern_2 # seqlets: 3479 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Sp2, Klf3, Sp3, Sp1, E2f4, Klf7, Klf4, Klf6, Klf12, Klf8, Klf1, Egr1, Egr2, Zbtb17, E2f1, Klf5, Zfp281, Sp5, Zfp740, Egr3, Zfx, Zbtb1, Sall4
metacluster_0/pattern_3 # seqlets: 2237 SequenceContrib ScoresHyp_Contrib Scores	Irf7, Stat2, Stat1, Zscan10, Irf9
metacluster_0/pattern_4 # seqlets: 1682 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_0/pattern_5 # seqlets: 1123 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Pbx3, Foxi1
metacluster_0/pattern_6 # seqlets: 763 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_0/pattern_7 # seqlets: 661 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfec, Usf2, Arntl, Mitf, Tfeb, Bhlhe40, Srebf1, Tfe3, Clock, Mlx, Arnt, Npas2, Srebf2, Tcfl5, Creb3l2, Atf1, Bhlhe41, Xbp1, Hlf, Dbp, Arnt2
metacluster_0/pattern_8 # seqlets: 642 SequenceContrib ScoresHyp_Contrib Scores	Atf7, Atf2, Creb1, Creb5, Jdp2, Crem, Rxrb, Mafb, Nfil3, Jun
metacluster_0/pattern_9 # seqlets: 554 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42, Rfx1
metacluster_0/pattern_10 # seqlets: 511 SequenceContrib ScoresHyp_Contrib Scores	Nfkb2, Nfkb1, Rela, Relb, Rel
metacluster_0/pattern_11 # seqlets: 389 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Cbfb, Runx3
metacluster_0/pattern_12 # seqlets: 381 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_13 # seqlets: 323 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx6, Rfx7
metacluster_0/pattern_14 # seqlets: 318 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2
metacluster_0/pattern_15 # seqlets: 262 SequenceContrib ScoresHyp_Contrib Scores	Fosl2, Fosl1, Gmeb2, Atf3, Cebpb, Gmeb1, Tef
metacluster_0/pattern_16 # seqlets: 206 SequenceContrib ScoresHyp_Contrib Scores	Mbd2
metacluster_0/pattern_17 # seqlets: 201 SequenceContrib ScoresHyp_Contrib Scores	Ets2
metacluster_0/pattern_18 # seqlets: 178 SequenceContrib ScoresHyp_Contrib Scores	Stat4
metacluster_0/pattern_19 # seqlets: 149 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_0/pattern_20 # seqlets: 147 SequenceContrib ScoresHyp_Contrib Scores	Mef2d, Mef2a, Mef2c
metacluster_0/pattern_21 # seqlets: 119 SequenceContrib ScoresHyp_Contrib Scores	Fos, Jund, Batf, Fosb, Junb, Bach2, Bach1, Mafa, Nfe2l2, Nfe2, Mafk, Mafg, Maff
metacluster_0/pattern_22 # seqlets: 70 SequenceContrib ScoresHyp_Contrib Scores	Nfib, Nfia, Nfic
metacluster_0/pattern_23 # seqlets: 35 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #152

TF Name	Pattern(s)
Spib	Pattern Name Modisco Significance metacluster_0/pattern_0 9.29973e-06 metacluster_0/pattern_3 6.68465e-07
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000447468 metacluster_0/pattern_3 0.00502309 metacluster_0/pattern_17 0.0221986
Irf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000124081 metacluster_0/pattern_3 6.187010000000001e-13
Irf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000125742 metacluster_0/pattern_3 0.0233422
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000160774 metacluster_0/pattern_17 0.00683244
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000521027 metacluster_0/pattern_12 0.0236759 metacluster_0/pattern_16 0.010769299999999999 metacluster_0/pattern_17 0.00296708
Spic	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0004939909999999999 metacluster_0/pattern_3 0.030735200000000004
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00197064 metacluster_0/pattern_16 0.0572419 metacluster_0/pattern_17 0.0449196
Erg	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0005829 metacluster_0/pattern_16 0.00889932 metacluster_0/pattern_17 0.0221986
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00184471 metacluster_0/pattern_16 0.0200627
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0005829
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0032741999999999997 metacluster_0/pattern_16 0.00514857 metacluster_0/pattern_17 0.015050899999999999
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_0 0.014679300000000001 metacluster_0/pattern_16 0.0572816
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00163713 metacluster_0/pattern_12 0.0260072 metacluster_0/pattern_16 0.00260059
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0005829
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00330157 metacluster_0/pattern_17 0.0324085
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0006839680000000001
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00867678 metacluster_0/pattern_17 0.016038399999999998
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0008596560000000001
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0013090999999999999 metacluster_0/pattern_16 0.010769299999999999 metacluster_0/pattern_17 0.0449196
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00184471 metacluster_0/pattern_16 0.021920699999999998
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.017221 metacluster_0/pattern_16 0.0367766 metacluster_0/pattern_17 0.0221986
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00197064 metacluster_0/pattern_16 0.024347099999999997
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00197064 metacluster_0/pattern_16 0.00889932
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.014636700000000002 metacluster_0/pattern_17 0.015050899999999999
Prdm1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00508827 metacluster_0/pattern_3 0.00348489
Irf3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00637653 metacluster_0/pattern_3 0.00116355
Irf2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00702415 metacluster_0/pattern_3 0.00993192
Fev	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0083053 metacluster_0/pattern_16 0.00800973
Irf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0111124 metacluster_0/pattern_3 2.9544400000000003e-06
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_0 0.015364500000000001
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_1 3.9349e-14
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_1 3.25977e-08
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.000955801
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_2 2.7226599999999995e-06 metacluster_0/pattern_9 0.000118987 metacluster_0/pattern_16 0.000247795 metacluster_0/pattern_19 0.0424348
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_2 8.16799e-06 metacluster_0/pattern_16 0.024347099999999997
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_2 1.00958e-05 metacluster_0/pattern_9 0.00181554 metacluster_0/pattern_16 0.00162093 metacluster_0/pattern_19 0.030674700000000003
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00029477700000000003 metacluster_0/pattern_9 0.0014455 metacluster_0/pattern_16 0.00260059
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00029477700000000003
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_2 0.000325771
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00587054
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_2 0.000367837
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00817465
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_2 0.000450882
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.023933799999999998
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.027038099999999995
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0211827
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00740265 metacluster_0/pattern_9 0.0246827
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.010630200000000001
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_2 0.011204
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0224922
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0224922
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_2 0.027038099999999995
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0311499
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0341264 metacluster_0/pattern_9 0.00220138 metacluster_0/pattern_15 0.0351389 metacluster_0/pattern_16 0.00436031 metacluster_0/pattern_19 0.014237999999999999
Zbtb1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0368643
Sall4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.04999
Irf7	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00274194
Stat2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00348489
Stat1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00348489
Zscan10	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0079541
Irf9	Pattern Name Modisco Significance metacluster_0/pattern_3 0.012198700000000002
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_4 7.46074e-07
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_5 3.51919e-12
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_5 2.39873e-10
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_5 7.1371499999999995e-09
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_5 5.24415e-06
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_5 5.24415e-06
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_6 7.4478e-22
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_6 1.1054899999999999e-21
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_6 1.17248e-13
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00359334
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0031548 metacluster_0/pattern_8 0.038542900000000005
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00410191 metacluster_0/pattern_15 0.00254021 metacluster_0/pattern_16 0.00889932
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00603957
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00255331
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00136409
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00594623
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00263084 metacluster_0/pattern_8 0.059687300000000006
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0031548
Clock	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0353573
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0312505
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_7 0.035011900000000006
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0031548
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0031548
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_7 0.006567699999999999
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.018815900000000003
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00963982 metacluster_0/pattern_8 0.030019599999999997 metacluster_0/pattern_15 0.049443 metacluster_0/pattern_16 0.014237399999999999
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0102451
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.045194099999999994
Hlf	Pattern Name Modisco Significance metacluster_0/pattern_7 0.045194099999999994 metacluster_0/pattern_15 0.049443
Dbp	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0469801 metacluster_0/pattern_8 0.0501351
Arnt2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0481427
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00112154 metacluster_0/pattern_15 0.032206599999999995 metacluster_0/pattern_16 0.03159120000000001
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00126622 metacluster_0/pattern_15 0.030481400000000002 metacluster_0/pattern_16 0.0572419
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00264472 metacluster_0/pattern_15 0.027485700000000002 metacluster_0/pattern_16 0.024347099999999997
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000469858
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00747266 metacluster_0/pattern_15 0.0407713 metacluster_0/pattern_16 0.03159120000000001 metacluster_0/pattern_21 0.000680356
Crem	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00729863 metacluster_0/pattern_15 0.0464723 metacluster_0/pattern_16 0.0408507
Rxrb	Pattern Name Modisco Significance metacluster_0/pattern_8 0.026449
Mafb	Pattern Name Modisco Significance metacluster_0/pattern_8 0.027927800000000003 metacluster_0/pattern_21 0.0291459
Nfil3	Pattern Name Modisco Significance metacluster_0/pattern_8 0.038542900000000005
Jun	Pattern Name Modisco Significance metacluster_0/pattern_8 0.047205800000000006 metacluster_0/pattern_15 0.0452155 metacluster_0/pattern_16 0.051232799999999995 metacluster_0/pattern_21 2.7926e-05
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_9 3.87537e-06
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_9 9.29523e-06
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_9 0.012911099999999998
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0160879 metacluster_0/pattern_13 7.80417e-10 metacluster_0/pattern_15 0.0452715 metacluster_0/pattern_16 0.059659199999999996 metacluster_0/pattern_18 0.0358754
Nfkb2	Pattern Name Modisco Significance metacluster_0/pattern_10 1.73304e-05
Nfkb1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.000321497
Rela	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00147969 metacluster_0/pattern_17 0.0373165
Relb	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00116898
Rel	Pattern Name Modisco Significance metacluster_0/pattern_10 0.051944000000000004
Runx1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0036626999999999996
Runx2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00121772
Cbfb	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00282441
Runx3	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00282441
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00486795 metacluster_0/pattern_18 0.030340199999999998
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_13 6.62517e-09 metacluster_0/pattern_18 0.057387099999999996
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_13 0.000359712 metacluster_0/pattern_18 0.021447499999999998
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00151987 metacluster_0/pattern_18 0.000995824
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00291264 metacluster_0/pattern_18 0.0144637
Pou2f2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00786214
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_15 0.027485700000000002 metacluster_0/pattern_21 1.81717e-05
Fosl1	Pattern Name Modisco Significance metacluster_0/pattern_15 0.027485700000000002 metacluster_0/pattern_21 0.0122421
Gmeb2	Pattern Name Modisco Significance metacluster_0/pattern_15 0.027485700000000002
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_15 0.027485700000000002 metacluster_0/pattern_21 0.000350394
Cebpb	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0484898
Gmeb1	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0484898
Tef	Pattern Name Modisco Significance metacluster_0/pattern_15 0.053736900000000004
Mbd2	Pattern Name Modisco Significance metacluster_0/pattern_16 0.042367
Ets2	Pattern Name Modisco Significance metacluster_0/pattern_17 0.0429038
Stat4	Pattern Name Modisco Significance metacluster_0/pattern_18 0.0437953
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_19 1.8074800000000002e-05
Mef2d	Pattern Name Modisco Significance metacluster_0/pattern_20 1.05805e-08
Mef2a	Pattern Name Modisco Significance metacluster_0/pattern_20 0.00031820599999999997
Mef2c	Pattern Name Modisco Significance metacluster_0/pattern_20 1.0821199999999999e-07
Fos	Pattern Name Modisco Significance metacluster_0/pattern_21 8.09898e-06
Jund	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0153828
Batf	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0236192
Fosb	Pattern Name Modisco Significance metacluster_0/pattern_21 0.000314678
Junb	Pattern Name Modisco Significance metacluster_0/pattern_21 0.038567500000000005
Bach2	Pattern Name Modisco Significance metacluster_0/pattern_21 0.00308731
Bach1	Pattern Name Modisco Significance metacluster_0/pattern_21 0.00864847
Mafa	Pattern Name Modisco Significance metacluster_0/pattern_21 0.00983476
Nfe2l2	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0122421
Nfe2	Pattern Name Modisco Significance metacluster_0/pattern_21 0.011208599999999999
Mafk	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0151061
Mafg	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0318
Maff	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0442885
Nfib	Pattern Name Modisco Significance metacluster_0/pattern_22 0.00072447
Nfia	Pattern Name Modisco Significance metacluster_0/pattern_22 0.00335649
Nfic	Pattern Name Modisco Significance metacluster_0/pattern_22 0.0155066

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #67

TF Name	Modisco	Homer
Spic	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0004939909999999999 metacluster_0/pattern_3 0.030735200000000004	Pattern Name Homer Significance motif2.motif 0.00043013
Irf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000125742 metacluster_0/pattern_3 0.0233422	Pattern Name Homer Significance motif2.motif 0.000277313
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00029477700000000003	Pattern Name Homer Significance motif3.motif 0.000588669
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.000955801	Pattern Name Homer Significance motif3.motif 0.00586277
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00197064 metacluster_0/pattern_16 0.00889932	Pattern Name Homer Significance motif2.motif 0.000663865
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00587054	Pattern Name Homer Significance motif3.motif 0.0295215
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_0 0.015364500000000001	Pattern Name Homer Significance motif2.motif 0.0110522
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000447468 metacluster_0/pattern_3 0.00502309 metacluster_0/pattern_17 0.0221986	Pattern Name Homer Significance motif2.motif 0.00044969199999999996
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.014636700000000002 metacluster_0/pattern_17 0.015050899999999999	Pattern Name Homer Significance motif2.motif 0.035863400000000004
Prdm1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00508827 metacluster_0/pattern_3 0.00348489	Pattern Name Homer Significance motif2.motif 0.00520936
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00029477700000000003 metacluster_0/pattern_9 0.0014455 metacluster_0/pattern_16 0.00260059	Pattern Name Homer Significance motif3.motif 0.00261776
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0013090999999999999 metacluster_0/pattern_16 0.010769299999999999 metacluster_0/pattern_17 0.0449196	Pattern Name Homer Significance motif2.motif 0.000493315
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00740265 metacluster_0/pattern_9 0.0246827	Pattern Name Homer Significance motif3.motif 0.0054779
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00817465	Pattern Name Homer Significance motif3.motif 0.016067500000000002
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.027038099999999995	Pattern Name Homer Significance motif3.motif 0.0435664
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00197064 metacluster_0/pattern_16 0.0572419 metacluster_0/pattern_17 0.0449196	Pattern Name Homer Significance motif2.motif 0.00789777
Irf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000124081 metacluster_0/pattern_3 6.187010000000001e-13	Pattern Name Homer Significance motif2.motif 0.000278833
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_2 0.000450882	Pattern Name Homer Significance motif3.motif 0.00050527
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0224922	Pattern Name Homer Significance motif3.motif 0.0437914
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_0 0.014679300000000001 metacluster_0/pattern_16 0.0572816	Pattern Name Homer Significance motif2.motif 0.00444919
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_2 2.7226599999999995e-06 metacluster_0/pattern_9 0.000118987 metacluster_0/pattern_16 0.000247795 metacluster_0/pattern_19 0.0424348	Pattern Name Homer Significance motif3.motif 0.00019880900000000001
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00264472 metacluster_0/pattern_15 0.027485700000000002 metacluster_0/pattern_16 0.024347099999999997	Pattern Name Homer Significance motif7.motif 0.0414719
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_9 0.012911099999999998	Pattern Name Homer Significance motif12.motif 0.041113699999999996
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_5 3.51919e-12	Pattern Name Homer Significance motif9.motif 0.00555875
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00184471 metacluster_0/pattern_16 0.0200627	Pattern Name Homer Significance motif2.motif 0.00183315
Irf9	Pattern Name Modisco Significance metacluster_0/pattern_3 0.012198700000000002	Pattern Name Homer Significance motif2.motif 0.03773169999999999
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0006839680000000001	Pattern Name Homer Significance motif2.motif 0.00027499400000000003
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_6 1.1054899999999999e-21	Pattern Name Homer Significance motif4.motif 5.71611e-08
Erg	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0005829 metacluster_0/pattern_16 0.00889932 metacluster_0/pattern_17 0.0221986	Pattern Name Homer Significance motif2.motif 0.000335103
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0008596560000000001	Pattern Name Homer Significance motif2.motif 0.000470197
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00330157 metacluster_0/pattern_17 0.0324085	Pattern Name Homer Significance motif2.motif 0.00179358
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00184471 metacluster_0/pattern_16 0.021920699999999998	Pattern Name Homer Significance motif2.motif 0.000626671
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0032741999999999997 metacluster_0/pattern_16 0.00514857 metacluster_0/pattern_17 0.015050899999999999	Pattern Name Homer Significance motif2.motif 0.00108116
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_2 0.011204	Pattern Name Homer Significance motif3.motif 0.00795341
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0224922	Pattern Name Homer Significance motif3.motif 0.0267613
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_2 8.16799e-06 metacluster_0/pattern_16 0.024347099999999997	Pattern Name Homer Significance motif3.motif 0.00019880900000000001
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_2 0.000325771	Pattern Name Homer Significance motif3.motif 0.00029920099999999997
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000521027 metacluster_0/pattern_12 0.0236759 metacluster_0/pattern_16 0.010769299999999999 metacluster_0/pattern_17 0.00296708	Pattern Name Homer Significance motif2.motif 0.000301118
Fev	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0083053 metacluster_0/pattern_16 0.00800973	Pattern Name Homer Significance motif2.motif 0.0057961
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_6 7.4478e-22	Pattern Name Homer Significance motif4.motif 3.23109e-08
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_5 7.1371499999999995e-09	Pattern Name Homer Significance motif9.motif 0.00563201
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00163713 metacluster_0/pattern_12 0.0260072 metacluster_0/pattern_16 0.00260059	Pattern Name Homer Significance motif2.motif 0.00043013
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.017221 metacluster_0/pattern_16 0.0367766 metacluster_0/pattern_17 0.0221986	Pattern Name Homer Significance motif2.motif 0.000663865
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_9 9.29523e-06	Pattern Name Homer Significance motif12.motif 0.00623998
Irf3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00637653 metacluster_0/pattern_3 0.00116355	Pattern Name Homer Significance motif2.motif 0.0111139
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_5 2.39873e-10	Pattern Name Homer Significance motif9.motif 0.00648131
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0211827	Pattern Name Homer Significance motif3.motif 0.0526793
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_4 7.46074e-07	Pattern Name Homer Significance motif10.motif 2.6803800000000002e-05
Irf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0111124 metacluster_0/pattern_3 2.9544400000000003e-06	Pattern Name Homer Significance motif2.motif 0.00940342
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_2 1.00958e-05 metacluster_0/pattern_9 0.00181554 metacluster_0/pattern_16 0.00162093 metacluster_0/pattern_19 0.030674700000000003	Pattern Name Homer Significance motif3.motif 0.00019880900000000001
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00867678 metacluster_0/pattern_17 0.016038399999999998	Pattern Name Homer Significance motif2.motif 0.00687705
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0005829	Pattern Name Homer Significance motif2.motif 0.00039672199999999996
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.023933799999999998	Pattern Name Homer Significance motif3.motif 0.039089
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_5 5.24415e-06	Pattern Name Homer Significance motif9.motif 0.0385199
Zbtb1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0368643	Pattern Name Homer Significance motif3.motif 0.013322799999999997
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_5 5.24415e-06	Pattern Name Homer Significance motif9.motif 0.0594175
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_9 3.87537e-06	Pattern Name Homer Significance motif12.motif 0.000515321
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00197064 metacluster_0/pattern_16 0.024347099999999997	Pattern Name Homer Significance motif2.motif 0.0006945860000000001
Spib	Pattern Name Modisco Significance metacluster_0/pattern_0 9.29973e-06 metacluster_0/pattern_3 6.68465e-07	Pattern Name Homer Significance motif2.motif 0.00010724
Irf2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00702415 metacluster_0/pattern_3 0.00993192	Pattern Name Homer Significance motif2.motif 0.00520936
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_1 3.25977e-08	Pattern Name Homer Significance motif1.motif 0.000821805 motif8.motif 0.00472827
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000160774 metacluster_0/pattern_17 0.00683244	Pattern Name Homer Significance motif2.motif 0.00043013
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_2 0.000367837	Pattern Name Homer Significance motif3.motif 0.00125043
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0005829	Pattern Name Homer Significance motif2.motif 0.00043013
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_1 3.9349e-14	Pattern Name Homer Significance motif1.motif 0.000418476 motif8.motif 0.0038510999999999997
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_2 0.010630200000000001	Pattern Name Homer Significance motif3.motif 0.00418418
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_6 1.17248e-13	Pattern Name Homer Significance motif4.motif 1.10967e-05

Unique TF-MoDISco TFs: #85

TF Name	Modisco	Homer
Fos	Pattern Name Modisco Significance metacluster_0/pattern_21 8.09898e-06	Absent
Jund	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0153828	Absent
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0031548	Absent
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00603957	Absent
Hlf	Pattern Name Modisco Significance metacluster_0/pattern_7 0.045194099999999994 metacluster_0/pattern_15 0.049443	Absent
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0311499	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_7 0.006567699999999999	Absent
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0031548	Absent
Rel	Pattern Name Modisco Significance metacluster_0/pattern_10 0.051944000000000004	Absent
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00963982 metacluster_0/pattern_8 0.030019599999999997 metacluster_0/pattern_15 0.049443 metacluster_0/pattern_16 0.014237399999999999	Absent
Runx3	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00282441	Absent
Maff	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0442885	Absent
Jun	Pattern Name Modisco Significance metacluster_0/pattern_8 0.047205800000000006 metacluster_0/pattern_15 0.0452155 metacluster_0/pattern_16 0.051232799999999995 metacluster_0/pattern_21 2.7926e-05	Absent
Irf7	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00274194	Absent
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_13 6.62517e-09 metacluster_0/pattern_18 0.057387099999999996	Absent
Nfkb2	Pattern Name Modisco Significance metacluster_0/pattern_10 1.73304e-05	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.018815900000000003	Absent
Rxrb	Pattern Name Modisco Significance metacluster_0/pattern_8 0.026449	Absent
Mafa	Pattern Name Modisco Significance metacluster_0/pattern_21 0.00983476	Absent
Nfia	Pattern Name Modisco Significance metacluster_0/pattern_22 0.00335649	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.00786214	Absent
Stat1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00348489	Absent
Mbd2	Pattern Name Modisco Significance metacluster_0/pattern_16 0.042367	Absent
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_15 0.027485700000000002 metacluster_0/pattern_21 0.000350394	Absent
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00359334	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0122421	Absent
Nfe2	Pattern Name Modisco Significance metacluster_0/pattern_21 0.011208599999999999	Absent
Runx1	Pattern Name Modisco Significance metacluster_0/pattern_11 0.0036626999999999996	Absent
Tef	Pattern Name Modisco Significance metacluster_0/pattern_15 0.053736900000000004	Absent
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0031548 metacluster_0/pattern_8 0.038542900000000005	Absent
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_2 0.027038099999999995	Absent
Sall4	Pattern Name Modisco Significance metacluster_0/pattern_2 0.04999	Absent
Stat4	Pattern Name Modisco Significance metacluster_0/pattern_18 0.0437953	Absent
Fosl1	Pattern Name Modisco Significance metacluster_0/pattern_15 0.027485700000000002 metacluster_0/pattern_21 0.0122421	Absent
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_13 0.000359712 metacluster_0/pattern_18 0.021447499999999998	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0102451	Absent
Junb	Pattern Name Modisco Significance metacluster_0/pattern_21 0.038567500000000005	Absent
Zscan10	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0079541	Absent
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00136409	Absent
Batf	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0236192	Absent
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00255331	Absent
Mafk	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0151061	Absent
Bach1	Pattern Name Modisco Significance metacluster_0/pattern_21 0.00864847	Absent
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00126622 metacluster_0/pattern_15 0.030481400000000002 metacluster_0/pattern_16 0.0572419	Absent
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00747266 metacluster_0/pattern_15 0.0407713 metacluster_0/pattern_16 0.03159120000000001 metacluster_0/pattern_21 0.000680356	Absent
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00151987 metacluster_0/pattern_18 0.000995824	Absent
Cbfb	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00282441	Absent
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0160879 metacluster_0/pattern_13 7.80417e-10 metacluster_0/pattern_15 0.0452715 metacluster_0/pattern_16 0.059659199999999996 metacluster_0/pattern_18 0.0358754	Absent
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00486795 metacluster_0/pattern_18 0.030340199999999998	Absent
Rela	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00147969 metacluster_0/pattern_17 0.0373165	Absent
Gmeb1	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0484898	Absent
Clock	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0353573	Absent
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_15 0.027485700000000002 metacluster_0/pattern_21 1.81717e-05	Absent
Mef2a	Pattern Name Modisco Significance metacluster_0/pattern_20 0.00031820599999999997	Absent
Bach2	Pattern Name Modisco Significance metacluster_0/pattern_21 0.00308731	Absent
Ets2	Pattern Name Modisco Significance metacluster_0/pattern_17 0.0429038	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_19 1.8074800000000002e-05	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00594623	Absent
Stat2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00348489	Absent
Cebpb	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0484898	Absent
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00263084 metacluster_0/pattern_8 0.059687300000000006	Absent
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00410191 metacluster_0/pattern_15 0.00254021 metacluster_0/pattern_16 0.00889932	Absent
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.045194099999999994	Absent
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0031548	Absent
Arnt2	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0481427	Absent
Nfkb1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.000321497	Absent
Relb	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00116898	Absent
Mafb	Pattern Name Modisco Significance metacluster_0/pattern_8 0.027927800000000003 metacluster_0/pattern_21 0.0291459	Absent
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0312505	Absent
Mef2c	Pattern Name Modisco Significance metacluster_0/pattern_20 1.0821199999999999e-07	Absent
Dbp	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0469801 metacluster_0/pattern_8 0.0501351	Absent
Nfil3	Pattern Name Modisco Significance metacluster_0/pattern_8 0.038542900000000005	Absent
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_13 0.00291264 metacluster_0/pattern_18 0.0144637	Absent
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00112154 metacluster_0/pattern_15 0.032206599999999995 metacluster_0/pattern_16 0.03159120000000001	Absent
Nfic	Pattern Name Modisco Significance metacluster_0/pattern_22 0.0155066	Absent
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_2 0.0341264 metacluster_0/pattern_9 0.00220138 metacluster_0/pattern_15 0.0351389 metacluster_0/pattern_16 0.00436031 metacluster_0/pattern_19 0.014237999999999999	Absent
Mafg	Pattern Name Modisco Significance metacluster_0/pattern_21 0.0318	Absent
Mef2d	Pattern Name Modisco Significance metacluster_0/pattern_20 1.05805e-08	Absent
Crem	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00729863 metacluster_0/pattern_15 0.0464723 metacluster_0/pattern_16 0.0408507	Absent
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000469858	Absent
Gmeb2	Pattern Name Modisco Significance metacluster_0/pattern_15 0.027485700000000002	Absent
Nfib	Pattern Name Modisco Significance metacluster_0/pattern_22 0.00072447	Absent
Fosb	Pattern Name Modisco Significance metacluster_0/pattern_21 0.000314678	Absent
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_7 0.035011900000000006	Absent
Runx2	Pattern Name Modisco Significance metacluster_0/pattern_11 0.00121772	Absent

Unique Homer TFs: #3

TF Name	Modisco	Homer
E2f6	Absent	Pattern Name Homer Significance motif3.motif 0.039089
Klf15	Absent	Pattern Name Homer Significance motif3.motif 0.011498999999999999
E2f7	Absent	Pattern Name Homer Significance motif3.motif 0.013322799999999997