In [1]:
# Parameters
data_name = "Msc"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:20:34,688 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Msc: Motif: M01730_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Msc: #21

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0169932

Pattern: motif5.motif

Significance: 0.00020696

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00391474

/

Pattern: metacluster_0/pattern_7

Significance: 0.042116100000000004

Pattern: motif12.motif

Significance: 0.0295916

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00889633

Pattern: motif6.motif

Significance: 0.0464545

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0315846

Pattern: motif5.motif

Significance: 0.00109481

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0231389

Pattern: motif7.motif

Significance: 0.017209000000000002

ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00107463

Pattern: motif4.motif

Significance: 0.000545065

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.000553104

Pattern: motif4.motif

Significance: 0.00016915599999999998

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.00583266

Pattern: motif15.motif

Significance: 0.0253346

BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.00537127

Pattern: motif15.motif

Significance: 0.00326297

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.00474727

Pattern: motif7.motif

Significance: 0.00113431

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00579267

/

Pattern: metacluster_1/pattern_10

Significance: 0.0339088

Pattern: motif2.motif

Significance: 0.026782999999999998

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.00790497

Pattern: motif13.motif

Significance: 0.00177863

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.046725

Pattern: motif18.motif

Significance: 0.0329454

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00532126

Pattern: motif2.motif

Significance: 8.76878e-06

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00272851

Pattern: motif16.motif

Significance: 0.033480199999999995

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.000121628

Pattern: motif4.motif

Significance: 0.00305757

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00269394

Pattern: motif11.motif

Significance: 0.00115853

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00917965

/

Pattern: metacluster_1/pattern_15

Significance: 0.00830039

Pattern: motif7.motif

Significance: 0.000235065

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00796469

Pattern: motif10.motif

Significance: 0.0109583

WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00176506

/

Pattern: metacluster_1/pattern_11

Significance: 0.05623530000000001

Pattern: motif2.motif

Significance: 0.0157607

wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00105115

Pattern: motif4.motif

Significance: 0.016491099999999998

Unique Cell types only TF-MoDISco finds Msc: #37

Cell typeModiscoHomer
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.048054599999999996

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00260026

Absent
SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0280781

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0265568

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.00657626

Absent
MN1;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.016003

Absent
3T3-L1;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0447507

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00327688

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00393104

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00279775

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0239237

/

Pattern: metacluster_0/pattern_22

Significance: 0.0352779

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.011713600000000001

/

Pattern: metacluster_0/pattern_22

Significance: 0.000939462

/

Pattern: metacluster_0/pattern_24

Significance: 0.0166069

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.010247399999999999

/

Pattern: metacluster_0/pattern_22

Significance: 0.022395500000000002

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.000592987

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0007564910000000001

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00698402

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.000326606

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.00132272

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.017681

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.0396459

Absent
Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0114646

Absent
BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.00439447

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0332898

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0272675

Absent
FBRBLST;8wks;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.0554293

Absent
3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0475111

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.042651999999999995

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.0286185

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0262233

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00483377

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00739171

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.00202066

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011445100000000001

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00497956

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.00946628

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0328327

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00508246

Absent
Unique Cell types only Homer finds Msc: #1

Cell typeModiscoHomer
B;B220_CD43;A;GEOAbsent

Pattern: motif11.motif

Significance: 0.018223