# Parameters
data_name = "Tbx3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:41:44,496 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Tbx3: Motif: M00834_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tbx3: #1

Cell type	Modisco	Homer
T_LCMV;CD8+;D8;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.027467400000000003	Pattern: motif19.motif Significance: 0.00715975

Unique Cell types only TF-MoDISco finds Tbx3: #3

Cell type	Modisco	Homer
NK_SPLND;A;CL	Pattern: metacluster_0/pattern_15 Significance: 0.00119996	Absent
TEff_SPLND;CD8+;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.0210716	Absent
ePyramidal_NRN;A;GEO	Pattern: metacluster_1/pattern_15 Significance: 0.00529745	Absent

Unique Cell types only Homer finds Tbx3: #4

Cell type	Modisco	Homer
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO	Absent	Pattern: motif8.motif Significance: 0.00930078
ThMS_MEC;Aire++;A;GEO	Absent	Pattern: motif12.motif Significance: 0.0418399
plasmaB;A;CL	Absent	Pattern: motif9.motif Significance: 0.042888699999999995
ENDRM_ESD;A;GEO	Absent	Pattern: motif15.motif Significance: 0.042831