In [1]:
# Parameters
data_name = "Prop1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:30:04,714 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Prop1: Motif: M00498_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Prop1: #23

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0355961

/

Pattern: metacluster_0/pattern_7

Significance: 0.048001999999999996

Pattern: motif4.motif

Significance: 0.00824027

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0326126

/

Pattern: metacluster_1/pattern_13

Significance: 0.027038200000000002

Pattern: motif5.motif

Significance: 0.00901221

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0226124

Pattern: motif3.motif

Significance: 0.0450347

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.047305

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00353828

Pattern: motif3.motif

Significance: 0.00340715

MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00283302

Pattern: motif6.motif

Significance: 0.0296692

MN1;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00339187

Pattern: motif9.motif

Significance: 0.000300973

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0237667

Pattern: motif13.motif

Significance: 0.0162274

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0113635

Pattern: motif16.motif

Significance: 0.016582

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0267236

Pattern: motif9.motif

Significance: 0.056367499999999994

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.04473169999999999

Pattern: motif3.motif

Significance: 0.0228253

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.00826703

Pattern: motif13.motif

Significance: 0.010199

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.027780799999999998

Pattern: motif2.motif

Significance: 0.00739831

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0124549

Pattern: motif6.motif

Significance: 0.017838200000000002

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.029120499999999997

Pattern: motif2.motif

Significance: 0.00600115

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0189787

Pattern: motif3.motif

Significance: 0.00782481

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0342907

Pattern: motif4.motif

Significance: 0.00542561

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.029251799999999998

Pattern: motif2.motif

Significance: 0.00554129

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0202416

Pattern: motif10.motif

Significance: 0.0196775

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.031017700000000002

/

Pattern: metacluster_0/pattern_8

Significance: 0.0198821

Pattern: motif3.motif

Significance: 0.0105771

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.0189349

Pattern: motif6.motif

Significance: 0.0220089

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0134537

Pattern: motif14.motif

Significance: 0.056552599999999995

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0268069

Pattern: motif2.motif

Significance: 0.00621698

Unique Cell types only TF-MoDISco finds Prop1: #21

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.05664119999999999

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.039218699999999995

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0275437

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.040664599999999995

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0592721

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.031057599999999998

/

Pattern: metacluster_0/pattern_25

Significance: 0.025543200000000002

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 0.0103727

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.020590200000000003

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.0113179

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.056819600000000005

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0247075

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0359206

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0421697

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0378478

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0570164

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.05354640000000001

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.042765199999999996

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_19

Significance: 0.041572000000000005

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0584442

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.049344400000000004

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.045549099999999995

Absent
Unique Cell types only Homer finds Prop1: #4

Cell typeModiscoHomer
wES.CRNL_NRL_CRST;E10.5;A;GEOAbsent

Pattern: motif3.motif

Significance: 0.0240568

CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.015315899999999999

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0230635

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.014950299999999998