# Parameters
data_name = "Dmbx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:01:53,905 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Dmbx1: Motif: M00441_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Dmbx1: #9

Cell type	Modisco	Homer
RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.0520384	Pattern: motif2.motif Significance: 0.00159982
RTN;D1;D;En	Pattern: metacluster_0/pattern_6 Significance: 0.0129174	Pattern: motif5.motif Significance: 0.0166875
ENDRM_ESD;A;GEO	Pattern: metacluster_1/pattern_7 Significance: 0.00168862	Pattern: motif3.motif Significance: 0.0102344
ROD_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.0555139	Pattern: motif2.motif Significance: 7.017859999999999e-05
ROD_PHT_RCPTR_RTN;A;GEO	Pattern: metacluster_0/pattern_1 Significance: 0.00560681	Pattern: motif3.motif Significance: 0.00610392
GCN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.0342895	Pattern: motif2.motif Significance: 0.00120963
BL_CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.037286900000000005	Pattern: motif2.motif Significance: 0.027540600000000002
CN_PHT_RCPTR;A;GEO	Pattern: metacluster_1/pattern_1 Significance: 0.00436017	Pattern: motif2.motif Significance: 0.000693684
wES;3rd_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_12 Significance: 0.00390311	Pattern: motif13.motif Significance: 0.0172927

Unique Cell types only TF-MoDISco finds Dmbx1: #7

Cell type	Modisco	Homer
eye-NRL_RTN;A;CL	Pattern: metacluster_0/pattern_9 Significance: 0.00364132	Absent
Adipose;D;En	Pattern: metacluster_0/pattern_15 Significance: 0.0235595	Absent
Corticotrope;A;GEO	Pattern: metacluster_0/pattern_13 Significance: 0.0390103	Absent
wES;Hnd_BRN;E11.5;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.00297283	Absent
wES;Md_BRN;E14.4;D;En	Pattern: metacluster_0/pattern_12 Significance: 0.000726494	Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO	Pattern: metacluster_0/pattern_10 Significance: 0.00221983	Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO	Pattern: metacluster_0/pattern_19 Significance: 0.00453342	Absent

No Cell types only Homer finds Dmbx1