# Parameters
data_name = "eye-NRL_RTN;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_65-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_65-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:53:55,193 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	Eye- Neural retina
Cell Group	Neural Cells and Tissues
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	44551	31029	8.2759	46621271	2562967	0.055	3658578	0.0785	15749885	0.338

Modelling Metadata

Metric	Value
auPRC	0.7261
Calibrated Recall at 50% FDR	0.166
Number of Positive Examples in Test Data	33039
Number of Negative Examples in Test Data	8037812
Imbalance Ratio in Test Data	0.0041
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #20

Pattern Name	TF Name(s)	Modisco
metacluster_0/pattern_0 # seqlets: 2427 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_0/pattern_1 # seqlets: 1985 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp3, Klf3, Sp1, Sp4, Klf6, Klf4, Klf5, E2f4, Klf7, Egr1, Klf8, Klf12, Zbtb17, Sp5, Egr2, Klf1, Zfp281, Wt1, E2f1, Maz, Srebf2, Sall4, Zfp740, Klf15, Egr3, Zbtb1
metacluster_0/pattern_2 # seqlets: 1691 SequenceContrib ScoresHyp_Contrib Scores	Nrf1, Zfx
metacluster_0/pattern_3 # seqlets: 1675 SequenceContrib ScoresHyp_Contrib Scores	Fli1, Gabpa, Elk4, Ets1, Elk1, Elf1, Erg, Elk3, Etv2, Etv1, Etv4, Fev, Etv5, Etv3, XP_911724.4, Etv6, Ehf, Elf3, Elf5, Elf4, Elf2, Spi1, Spdef, Mbd2, Irf8, E2f3
metacluster_0/pattern_4 # seqlets: 1598 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_0/pattern_5 # seqlets: 1556 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_6 # seqlets: 883 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Usf2, Atf2, Atf1, Atf7, Crem, Jdp2, Creb5, Atf3, Usf1, Fosl2, Rfx1, Jun
metacluster_0/pattern_7 # seqlets: 827 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42, Mxi1
metacluster_0/pattern_8 # seqlets: 822 SequenceContrib ScoresHyp_Contrib Scores	Arntl, Tfe3, Tfeb, Mitf, Tfec, Clock, Bhlhe40, Arnt, Srebf1, Npas2, Mlx, Mycn, Creb3l2, Max, Myc, Tcfl5, Rarg, Bhlhe41, Xbp1, Hes1, Mlxip, Thra
metacluster_0/pattern_9 # seqlets: 763 SequenceContrib ScoresHyp_Contrib Scores	Crx, Dmbx1, Otx1, Otx2, Obox6, Obox1, Pitx1, Gsc, Pitx3, Obox3, Pitx2
metacluster_0/pattern_10 # seqlets: 746 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_0/pattern_11 # seqlets: 633 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_12 # seqlets: 382 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6, Sox2, Pou5f1
metacluster_0/pattern_13 # seqlets: 350 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_0/pattern_14 # seqlets: 235 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_15 # seqlets: 167 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_16 # seqlets: 103 SequenceContrib ScoresHyp_Contrib Scores	Mef2d, Mef2a, Mef2c
metacluster_0/pattern_17 # seqlets: 88 SequenceContrib ScoresHyp_Contrib Scores	Tfap2b, Tfap2c, Nhlh1
metacluster_0/pattern_18 # seqlets: 56 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2, Pou2f1
metacluster_0/pattern_19 # seqlets: 47 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #131

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_0 3.10193e-10 metacluster_0/pattern_11 0.059533800000000005 metacluster_0/pattern_14 0.00938016 metacluster_0/pattern_15 0.00446333 metacluster_0/pattern_17 0.0108765
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_0 3.0804899999999996e-09 metacluster_0/pattern_1 0.0478053 metacluster_0/pattern_11 0.0170252 metacluster_0/pattern_14 0.000236095 metacluster_0/pattern_15 0.0007251089999999999 metacluster_0/pattern_17 0.00598058 metacluster_0/pattern_19 0.05606030000000001
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_1 8.23952e-11 metacluster_0/pattern_2 0.0135623 metacluster_0/pattern_5 6.23425e-07 metacluster_0/pattern_6 0.00202042 metacluster_0/pattern_7 4.79513e-05 metacluster_0/pattern_11 1.07825e-05 metacluster_0/pattern_13 0.00421655 metacluster_0/pattern_14 8.23128e-06 metacluster_0/pattern_15 2.17333e-08 metacluster_0/pattern_17 1.0992399999999999e-10 metacluster_0/pattern_19 2.01548e-05
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_1 1.62907e-09 metacluster_0/pattern_2 0.0502719 metacluster_0/pattern_5 2.3722e-06 metacluster_0/pattern_6 0.0210312 metacluster_0/pattern_7 0.000872541 metacluster_0/pattern_11 0.000208591 metacluster_0/pattern_13 0.00203584 metacluster_0/pattern_14 0.00010711799999999999 metacluster_0/pattern_15 1.24441e-06 metacluster_0/pattern_17 1.2931200000000001e-08 metacluster_0/pattern_19 0.000160743
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_1 5.799580000000001e-08 metacluster_0/pattern_5 0.00032575 metacluster_0/pattern_7 0.0280464 metacluster_0/pattern_11 0.0145995 metacluster_0/pattern_14 0.00734271 metacluster_0/pattern_15 5.80066e-05 metacluster_0/pattern_17 1.08578e-05 metacluster_0/pattern_19 0.000208223
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000249091 metacluster_0/pattern_2 0.057813300000000005 metacluster_0/pattern_5 0.047480400000000006 metacluster_0/pattern_6 0.0210312 metacluster_0/pattern_7 0.00021909 metacluster_0/pattern_11 0.000474672 metacluster_0/pattern_14 0.000236095 metacluster_0/pattern_15 0.013602000000000001 metacluster_0/pattern_17 0.00707884 metacluster_0/pattern_19 0.000160743
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00137378 metacluster_0/pattern_5 0.027135900000000004 metacluster_0/pattern_15 0.00287768 metacluster_0/pattern_17 0.0345412 metacluster_0/pattern_19 0.05606030000000001
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000140046 metacluster_0/pattern_5 0.00032575 metacluster_0/pattern_15 0.013673900000000001 metacluster_0/pattern_17 0.00183882 metacluster_0/pattern_19 0.026569599999999995
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00036492400000000003 metacluster_0/pattern_5 0.0575698
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000354141 metacluster_0/pattern_5 0.0409284 metacluster_0/pattern_17 0.00982383
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000354141 metacluster_0/pattern_5 0.0278168
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00036492400000000003 metacluster_0/pattern_5 0.0476589
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0189391 metacluster_0/pattern_5 0.00749626 metacluster_0/pattern_11 0.0325461 metacluster_0/pattern_14 0.049139300000000004 metacluster_0/pattern_15 0.00788468 metacluster_0/pattern_17 0.00707884 metacluster_0/pattern_19 0.05606030000000001
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000751852
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000751852
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00116825 metacluster_0/pattern_5 0.0212152 metacluster_0/pattern_7 0.011282899999999998 metacluster_0/pattern_11 0.00645493 metacluster_0/pattern_14 0.00921311 metacluster_0/pattern_15 0.00235182 metacluster_0/pattern_17 0.00183882 metacluster_0/pattern_19 0.0204467
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00200829 metacluster_0/pattern_5 0.04547059999999999 metacluster_0/pattern_15 0.0124226 metacluster_0/pattern_17 0.010118799999999999
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.025990499999999996 metacluster_0/pattern_5 0.0550421 metacluster_0/pattern_7 0.058298
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0478053 metacluster_0/pattern_5 0.00210607 metacluster_0/pattern_15 0.020143 metacluster_0/pattern_17 0.009610500000000001 metacluster_0/pattern_19 0.05606030000000001
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00515776 metacluster_0/pattern_5 0.0550421 metacluster_0/pattern_15 0.055496000000000004 metacluster_0/pattern_17 0.023775
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00515776 metacluster_0/pattern_5 0.00498203 metacluster_0/pattern_7 0.0280464 metacluster_0/pattern_11 0.047997399999999996 metacluster_0/pattern_14 0.035413099999999996 metacluster_0/pattern_15 0.00131029 metacluster_0/pattern_17 0.000798507 metacluster_0/pattern_19 0.019373500000000002
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0110287 metacluster_0/pattern_15 0.05940019999999999
Maz	Pattern Name Modisco Significance metacluster_0/pattern_1 0.014088999999999999 metacluster_0/pattern_5 0.030617200000000004 metacluster_0/pattern_7 0.041634500000000005 metacluster_0/pattern_15 0.00446333 metacluster_0/pattern_17 0.0154404 metacluster_0/pattern_19 0.0571322
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0189391 metacluster_0/pattern_8 0.0113097
Sall4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0194633
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_1 0.027729900000000002
Klf15	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0336009 metacluster_0/pattern_5 0.00640597 metacluster_0/pattern_15 0.013602000000000001 metacluster_0/pattern_17 0.021712000000000002
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0392164
Zbtb1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0478053
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_2 1.59929e-05 metacluster_0/pattern_11 0.0170252
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00953875 metacluster_0/pattern_5 0.0409284 metacluster_0/pattern_6 0.00846644 metacluster_0/pattern_7 0.00108776 metacluster_0/pattern_11 0.024852000000000003 metacluster_0/pattern_13 0.00100894 metacluster_0/pattern_14 0.00938016 metacluster_0/pattern_15 0.021036199999999998 metacluster_0/pattern_17 0.00547804 metacluster_0/pattern_19 0.05606030000000001
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000647757 metacluster_0/pattern_5 0.0504298
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00150617
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000313271
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000647757
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000206994
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_3 7.303639999999999e-06
Erg	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000636073
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00069301
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000283659
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00043930300000000005
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0104826
Fev	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00041028300000000006
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000491352
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0016928000000000002
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00224452
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0553663
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0065369
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0363443
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0547736
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0103579
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0292985
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0492251
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_3 0.027813
Mbd2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0492251 metacluster_0/pattern_14 0.0240568 metacluster_0/pattern_17 0.021712000000000002
Irf8	Pattern Name Modisco Significance metacluster_0/pattern_3 0.05294069999999999
E2f3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.05635830000000001 metacluster_0/pattern_17 0.0562893
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_4 3.76472e-10
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_4 1.88665e-05
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_4 1.88665e-05
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_4 2.00798e-05
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_4 0.00032908
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00227243 metacluster_0/pattern_8 0.027160000000000004
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_6 1.82395e-05 metacluster_0/pattern_7 0.0562394 metacluster_0/pattern_8 0.00307704 metacluster_0/pattern_11 0.0025171 metacluster_0/pattern_13 0.038869 metacluster_0/pattern_14 0.00782232 metacluster_0/pattern_15 0.00573996 metacluster_0/pattern_17 0.00547804 metacluster_0/pattern_19 0.019373500000000002
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00461047
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.015189500000000002 metacluster_0/pattern_8 0.024246200000000002
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00126869 metacluster_0/pattern_8 0.058149400000000004
Crem	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0195271
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00141488
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00393395
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_6 0.011489200000000001
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.011186 metacluster_0/pattern_8 0.00753145
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.011489200000000001
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0206484 metacluster_0/pattern_7 0.00108776 metacluster_0/pattern_11 0.00407544 metacluster_0/pattern_12 5.37076e-09 metacluster_0/pattern_14 0.00812537 metacluster_0/pattern_15 0.018535299999999998 metacluster_0/pattern_17 0.00982383 metacluster_0/pattern_19 0.026569599999999995
Jun	Pattern Name Modisco Significance metacluster_0/pattern_6 0.022711900000000004
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_7 8.04967e-06
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_7 8.04967e-06
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0109774
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0280464 metacluster_0/pattern_11 0.00645493 metacluster_0/pattern_14 0.00921311 metacluster_0/pattern_15 0.011497 metacluster_0/pattern_17 0.0054878999999999995 metacluster_0/pattern_19 0.036973900000000004
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0113097
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000572496
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000358374
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000942096
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000608199
Clock	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00890035
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_8 0.027625200000000003
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_8 0.054597400000000004
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_8 0.024930400000000002
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00218198
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00446353
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0449176
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0156351
Max	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0524264
Myc	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0137896 metacluster_0/pattern_11 0.047997399999999996
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0162436
Rarg	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0281714
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_8 0.036243199999999996
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_8 0.036243199999999996
Hes1	Pattern Name Modisco Significance metacluster_0/pattern_8 0.04177
Mlxip	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0524264
Thra	Pattern Name Modisco Significance metacluster_0/pattern_8 0.054830899999999995
Crx	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0183295
Dmbx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00364132
Otx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0136653
Otx2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0136653
Obox6	Pattern Name Modisco Significance metacluster_0/pattern_9 0.016121299999999998
Obox1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0183295
Pitx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.019309700000000003
Gsc	Pattern Name Modisco Significance metacluster_0/pattern_9 0.023808799999999998
Pitx3	Pattern Name Modisco Significance metacluster_0/pattern_9 0.030347700000000002
Obox3	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0338251
Pitx2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.059434400000000005
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_10 1.44258e-21
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_10 2.4644499999999997e-21
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_10 2.21123e-13
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_12 0.000189605
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00180338
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_12 9.3976e-06
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00017324099999999998
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_12 0.000465272
Sox2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.040487199999999994
Pou5f1	Pattern Name Modisco Significance metacluster_0/pattern_12 0.0473712
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_13 1.79985e-05
Mef2d	Pattern Name Modisco Significance metacluster_0/pattern_16 1.21059e-07
Mef2a	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00031957400000000004
Mef2c	Pattern Name Modisco Significance metacluster_0/pattern_16 4.42977e-05
Tfap2b	Pattern Name Modisco Significance metacluster_0/pattern_17 0.019572799999999998
Tfap2c	Pattern Name Modisco Significance metacluster_0/pattern_17 0.0345412
Nhlh1	Pattern Name Modisco Significance metacluster_0/pattern_17 0.0396307
Pou2f2	Pattern Name Modisco Significance metacluster_0/pattern_18 0.00277664
Pou2f1	Pattern Name Modisco Significance metacluster_0/pattern_18 0.0404383

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #54

TF Name	Modisco	Homer
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0110287 metacluster_0/pattern_15 0.05940019999999999	Pattern Name Homer Significance motif1.motif 0.028156900000000002
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000354141 metacluster_0/pattern_5 0.0278168	Pattern Name Homer Significance motif1.motif 0.00431397
Fev	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00041028300000000006	Pattern Name Homer Significance motif5.motif 0.0126671
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0103579	Pattern Name Homer Significance motif5.motif 0.0160605
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000751852	Pattern Name Homer Significance motif1.motif 0.00295107
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0478053 metacluster_0/pattern_5 0.00210607 metacluster_0/pattern_15 0.020143 metacluster_0/pattern_17 0.009610500000000001 metacluster_0/pattern_19 0.05606030000000001	Pattern Name Homer Significance motif1.motif 0.025897399999999998 motif17.motif 0.0495958
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_4 0.00032908	Pattern Name Homer Significance motif4.motif 0.0117458
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000647757 metacluster_0/pattern_5 0.0504298	Pattern Name Homer Significance motif5.motif 0.022298500000000002 motif17.motif 0.0495958
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00043930300000000005	Pattern Name Homer Significance motif5.motif 0.014653600000000001
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_4 1.88665e-05	Pattern Name Homer Significance motif4.motif 0.00035303099999999996
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00069301	Pattern Name Homer Significance motif5.motif 0.0140767
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_3 7.303639999999999e-06	Pattern Name Homer Significance motif5.motif 0.00346012
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.025990499999999996 metacluster_0/pattern_5 0.0550421 metacluster_0/pattern_7 0.058298	Pattern Name Homer Significance motif1.motif 0.0484019
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000647757	Pattern Name Homer Significance motif5.motif 0.0241372
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0363443	Pattern Name Homer Significance motif5.motif 0.05776900000000001
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0547736	Pattern Name Homer Significance motif5.motif 0.038663499999999996
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_10 2.4644499999999997e-21	Pattern Name Homer Significance motif3.motif 1.38437e-06
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0292985	Pattern Name Homer Significance motif5.motif 0.014457399999999999
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000313271	Pattern Name Homer Significance motif5.motif 0.018448 motif17.motif 0.0495958
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000751852	Pattern Name Homer Significance motif1.motif 0.00012922200000000002
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0189391 metacluster_0/pattern_5 0.00749626 metacluster_0/pattern_11 0.0325461 metacluster_0/pattern_14 0.049139300000000004 metacluster_0/pattern_15 0.00788468 metacluster_0/pattern_17 0.00707884 metacluster_0/pattern_19 0.05606030000000001	Pattern Name Homer Significance motif1.motif 0.0114834
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000249091 metacluster_0/pattern_2 0.057813300000000005 metacluster_0/pattern_5 0.047480400000000006 metacluster_0/pattern_6 0.0210312 metacluster_0/pattern_7 0.00021909 metacluster_0/pattern_11 0.000474672 metacluster_0/pattern_14 0.000236095 metacluster_0/pattern_15 0.013602000000000001 metacluster_0/pattern_17 0.00707884 metacluster_0/pattern_19 0.000160743	Pattern Name Homer Significance motif1.motif 0.00188997 motif17.motif 0.03581090000000001
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000354141 metacluster_0/pattern_5 0.0409284 metacluster_0/pattern_17 0.00982383	Pattern Name Homer Significance motif1.motif 0.00934011
Erg	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000636073	Pattern Name Homer Significance motif5.motif 0.022298500000000002
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0104826	Pattern Name Homer Significance motif5.motif 0.015421100000000002
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_1 8.23952e-11 metacluster_0/pattern_2 0.0135623 metacluster_0/pattern_5 6.23425e-07 metacluster_0/pattern_6 0.00202042 metacluster_0/pattern_7 4.79513e-05 metacluster_0/pattern_11 1.07825e-05 metacluster_0/pattern_13 0.00421655 metacluster_0/pattern_14 8.23128e-06 metacluster_0/pattern_15 2.17333e-08 metacluster_0/pattern_17 1.0992399999999999e-10 metacluster_0/pattern_19 2.01548e-05	Pattern Name Homer Significance motif1.motif 0.00045808400000000004 motif17.motif 0.03581090000000001
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0553663	Pattern Name Homer Significance motif5.motif 0.0188575
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000491352	Pattern Name Homer Significance motif5.motif 0.00887396
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000206994	Pattern Name Homer Significance motif5.motif 0.0140767
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_2 1.59929e-05 metacluster_0/pattern_11 0.0170252	Pattern Name Homer Significance motif6.motif 0.0006514569999999999
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00200829 metacluster_0/pattern_5 0.04547059999999999 metacluster_0/pattern_15 0.0124226 metacluster_0/pattern_17 0.010118799999999999	Pattern Name Homer Significance motif1.motif 0.0327899
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_1 5.799580000000001e-08 metacluster_0/pattern_5 0.00032575 metacluster_0/pattern_7 0.0280464 metacluster_0/pattern_11 0.0145995 metacluster_0/pattern_14 0.00734271 metacluster_0/pattern_15 5.80066e-05 metacluster_0/pattern_17 1.08578e-05 metacluster_0/pattern_19 0.000208223	Pattern Name Homer Significance motif1.motif 0.00012922200000000002 motif17.motif 0.03581090000000001
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00036492400000000003 metacluster_0/pattern_5 0.0575698	Pattern Name Homer Significance motif1.motif 0.0103714
Zbtb1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0478053	Pattern Name Homer Significance motif1.motif 0.017603
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00036492400000000003 metacluster_0/pattern_5 0.0476589	Pattern Name Homer Significance motif1.motif 9.060559999999999e-05
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_10 2.21123e-13	Pattern Name Homer Significance motif3.motif 4.480399999999999e-05
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_2 0.00953875 metacluster_0/pattern_5 0.0409284 metacluster_0/pattern_6 0.00846644 metacluster_0/pattern_7 0.00108776 metacluster_0/pattern_11 0.024852000000000003 metacluster_0/pattern_13 0.00100894 metacluster_0/pattern_14 0.00938016 metacluster_0/pattern_15 0.021036199999999998 metacluster_0/pattern_17 0.00547804 metacluster_0/pattern_19 0.05606030000000001	Pattern Name Homer Significance motif17.motif 0.0495958
Klf15	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0336009 metacluster_0/pattern_5 0.00640597 metacluster_0/pattern_15 0.013602000000000001 metacluster_0/pattern_17 0.021712000000000002	Pattern Name Homer Significance motif1.motif 0.0224368
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00137378 metacluster_0/pattern_5 0.027135900000000004 metacluster_0/pattern_15 0.00287768 metacluster_0/pattern_17 0.0345412 metacluster_0/pattern_19 0.05606030000000001	Pattern Name Homer Significance motif1.motif 0.00431397 motif17.motif 0.03581090000000001
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_10 1.44258e-21	Pattern Name Homer Significance motif3.motif 1.08867e-06
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_4 1.88665e-05	Pattern Name Homer Significance motif4.motif 5.48224e-05
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_4 3.76472e-10	Pattern Name Homer Significance motif4.motif 4.25729e-05
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0016928000000000002	Pattern Name Homer Significance motif5.motif 0.026302499999999996
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_4 2.00798e-05	Pattern Name Homer Significance motif4.motif 0.00553058
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000140046 metacluster_0/pattern_5 0.00032575 metacluster_0/pattern_15 0.013673900000000001 metacluster_0/pattern_17 0.00183882 metacluster_0/pattern_19 0.026569599999999995	Pattern Name Homer Significance motif1.motif 0.00182955 motif17.motif 0.0495958
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00515776 metacluster_0/pattern_5 0.0550421 metacluster_0/pattern_15 0.055496000000000004 metacluster_0/pattern_17 0.023775	Pattern Name Homer Significance motif1.motif 0.050816
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_0 3.10193e-10 metacluster_0/pattern_11 0.059533800000000005 metacluster_0/pattern_14 0.00938016 metacluster_0/pattern_15 0.00446333 metacluster_0/pattern_17 0.0108765	Pattern Name Homer Significance motif2.motif 0.000846689
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_1 1.62907e-09 metacluster_0/pattern_2 0.0502719 metacluster_0/pattern_5 2.3722e-06 metacluster_0/pattern_6 0.0210312 metacluster_0/pattern_7 0.000872541 metacluster_0/pattern_11 0.000208591 metacluster_0/pattern_13 0.00203584 metacluster_0/pattern_14 0.00010711799999999999 metacluster_0/pattern_15 1.24441e-06 metacluster_0/pattern_17 1.2931200000000001e-08 metacluster_0/pattern_19 0.000160743	Pattern Name Homer Significance motif1.motif 0.00012922200000000002 motif17.motif 0.03581090000000001
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0492251	Pattern Name Homer Significance motif5.motif 0.05776900000000001
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00116825 metacluster_0/pattern_5 0.0212152 metacluster_0/pattern_7 0.011282899999999998 metacluster_0/pattern_11 0.00645493 metacluster_0/pattern_14 0.00921311 metacluster_0/pattern_15 0.00235182 metacluster_0/pattern_17 0.00183882 metacluster_0/pattern_19 0.0204467	Pattern Name Homer Significance motif1.motif 0.00934011
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_0 3.0804899999999996e-09 metacluster_0/pattern_1 0.0478053 metacluster_0/pattern_11 0.0170252 metacluster_0/pattern_14 0.000236095 metacluster_0/pattern_15 0.0007251089999999999 metacluster_0/pattern_17 0.00598058 metacluster_0/pattern_19 0.05606030000000001	Pattern Name Homer Significance motif2.motif 0.00938158
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0065369	Pattern Name Homer Significance motif5.motif 0.0234899
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00150617	Pattern Name Homer Significance motif5.motif 0.0140767
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_3 0.00224452	Pattern Name Homer Significance motif5.motif 0.027044099999999998

Unique TF-MoDISco TFs: #77

TF Name	Modisco	Homer
Pitx3	Pattern Name Modisco Significance metacluster_0/pattern_9 0.030347700000000002	Absent
Otx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0136653	Absent
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00515776 metacluster_0/pattern_5 0.00498203 metacluster_0/pattern_7 0.0280464 metacluster_0/pattern_11 0.047997399999999996 metacluster_0/pattern_14 0.035413099999999996 metacluster_0/pattern_15 0.00131029 metacluster_0/pattern_17 0.000798507 metacluster_0/pattern_19 0.019373500000000002	Absent
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_8 0.054597400000000004	Absent
Clock	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00890035	Absent
Mbd2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.0492251 metacluster_0/pattern_14 0.0240568 metacluster_0/pattern_17 0.021712000000000002	Absent
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00461047	Absent
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_8 0.036243199999999996	Absent
Pitx2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.059434400000000005	Absent
Tfap2b	Pattern Name Modisco Significance metacluster_0/pattern_17 0.019572799999999998	Absent
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0189391 metacluster_0/pattern_8 0.0113097	Absent
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00393395	Absent
Sall4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0194633	Absent
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0280464 metacluster_0/pattern_11 0.00645493 metacluster_0/pattern_14 0.00921311 metacluster_0/pattern_15 0.011497 metacluster_0/pattern_17 0.0054878999999999995 metacluster_0/pattern_19 0.036973900000000004	Absent
Hes1	Pattern Name Modisco Significance metacluster_0/pattern_8 0.04177	Absent
Irf8	Pattern Name Modisco Significance metacluster_0/pattern_3 0.05294069999999999	Absent
Tfap2c	Pattern Name Modisco Significance metacluster_0/pattern_17 0.0345412	Absent
Max	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0524264	Absent
E2f3	Pattern Name Modisco Significance metacluster_0/pattern_3 0.05635830000000001 metacluster_0/pattern_17 0.0562893	Absent
Otx2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0136653	Absent
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.011186 metacluster_0/pattern_8 0.00753145	Absent
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0449176	Absent
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.0392164	Absent
Crem	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0195271	Absent
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0206484 metacluster_0/pattern_7 0.00108776 metacluster_0/pattern_11 0.00407544 metacluster_0/pattern_12 5.37076e-09 metacluster_0/pattern_14 0.00812537 metacluster_0/pattern_15 0.018535299999999998 metacluster_0/pattern_17 0.00982383 metacluster_0/pattern_19 0.026569599999999995	Absent
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_7 8.04967e-06	Absent
Mef2c	Pattern Name Modisco Significance metacluster_0/pattern_16 4.42977e-05	Absent
Thra	Pattern Name Modisco Significance metacluster_0/pattern_8 0.054830899999999995	Absent
Mef2a	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00031957400000000004	Absent
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_12 9.3976e-06	Absent
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000572496	Absent
Mlxip	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0524264	Absent
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0113097	Absent
Pou5f1	Pattern Name Modisco Significance metacluster_0/pattern_12 0.0473712	Absent
Rarg	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0281714	Absent
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00017324099999999998	Absent
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_8 0.024930400000000002	Absent
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.015189500000000002 metacluster_0/pattern_8 0.024246200000000002	Absent
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00218198	Absent
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_12 0.000189605	Absent
Pou2f1	Pattern Name Modisco Significance metacluster_0/pattern_18 0.0404383	Absent
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_7 8.04967e-06	Absent
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_8 0.00446353	Absent
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_3 0.027813	Absent
Jun	Pattern Name Modisco Significance metacluster_0/pattern_6 0.022711900000000004	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0162436	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_13 1.79985e-05	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_8 0.027625200000000003	Absent
Maz	Pattern Name Modisco Significance metacluster_0/pattern_1 0.014088999999999999 metacluster_0/pattern_5 0.030617200000000004 metacluster_0/pattern_7 0.041634500000000005 metacluster_0/pattern_15 0.00446333 metacluster_0/pattern_17 0.0154404 metacluster_0/pattern_19 0.0571322	Absent
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.011489200000000001	Absent
Pitx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.019309700000000003	Absent
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000608199	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_0/pattern_18 0.00277664	Absent
Crx	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0183295	Absent
Sox2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.040487199999999994	Absent
Dmbx1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.00364132	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0156351	Absent
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_7 0.0109774	Absent
Mef2d	Pattern Name Modisco Significance metacluster_0/pattern_16 1.21059e-07	Absent
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_6 0.011489200000000001	Absent
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000358374	Absent
Obox1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0183295	Absent
Obox3	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0338251	Absent
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_1 0.027729900000000002	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_8 0.036243199999999996	Absent
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_6 1.82395e-05 metacluster_0/pattern_7 0.0562394 metacluster_0/pattern_8 0.00307704 metacluster_0/pattern_11 0.0025171 metacluster_0/pattern_13 0.038869 metacluster_0/pattern_14 0.00782232 metacluster_0/pattern_15 0.00573996 metacluster_0/pattern_17 0.00547804 metacluster_0/pattern_19 0.019373500000000002	Absent
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_8 0.000942096	Absent
Gsc	Pattern Name Modisco Significance metacluster_0/pattern_9 0.023808799999999998	Absent
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00180338	Absent
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_3 0.000283659	Absent
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_12 0.000465272	Absent
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00126869 metacluster_0/pattern_8 0.058149400000000004	Absent
Nhlh1	Pattern Name Modisco Significance metacluster_0/pattern_17 0.0396307	Absent
Myc	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0137896 metacluster_0/pattern_11 0.047997399999999996	Absent
Obox6	Pattern Name Modisco Significance metacluster_0/pattern_9 0.016121299999999998	Absent
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00227243 metacluster_0/pattern_8 0.027160000000000004	Absent
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00141488	Absent

Unique Homer TFs: #2

TF Name	Modisco	Homer
Tcfcp2l1	Absent	Pattern Name Homer Significance motif17.motif 0.0495958
Spib	Absent	Pattern Name Homer Significance motif5.motif 0.038663499999999996