# Parameters
data_name = "Fos"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:06:50,616 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| memT;CD4+;A;CL |
Significance: 2.21887e-07 |
Significance: 0.0016221 |
| Th17;CD4+;A;CL |
Significance: 0.0005419309999999999 |
Significance: 0.00316063 |
| BSPHL;A;CL |
Significance: 2.16337e-05 |
Significance: 8.185479999999999e-07 |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.000545846 |
Significance: 0.00554118 |
| NTRPHL;A;CL |
Significance: 0.00030885900000000003 |
Significance: 0.0223058 |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0017425999999999997 |
Significance: 2.66166e-05 |
| DC_BMD;A;CL |
Significance: 8.79795e-06 |
Significance: 9.3446e-05 |
| MCRPHG;A;CL |
Significance: 4.64369e-07 |
Significance: 1.1934299999999999e-06 |
| Erythroblast;A;CL |
Significance: 0.012127200000000001 |
Significance: 0.023697299999999998 |
| ES;MEF;A;CL |
Significance: 4.14843e-06 |
Significance: 2.54833e-06 |
| SML_INTSTN;A;CL |
Significance: 3.9385300000000004e-05 |
Significance: 0.00018563099999999999 |
| Heart;D;En |
Significance: 1.19006e-06 |
Significance: 7.8408e-05 |
| Adrenal;A;CL |
Significance: 1.05411e-05 |
Significance: 2.65536e-06 |
| placenta;A;CL |
Significance: 1.6797299999999998e-06 |
Significance: 2.47397e-05 |
| BRN;OLFTRY_BLB;A;CL |
Significance: 2.83677e-06 |
Significance: 3.93311e-07 |
| BRN;FRNTL_CRTX;A;CL |
Significance: 3.4066699999999996e-07 |
Significance: 0.000123915 |
| BRN;PTMN;A;CL |
Significance: 2.8681100000000002e-05 |
Significance: 9.408040000000001e-05 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 1.9706099999999998e-05 |
Significance: 0.000179034 |
| gamma_delta_TCR;A;CL |
Significance: 2.18166e-06 |
Significance: 0.00363987 |
| gamma_delta_TCR_MCR;A;CL |
Significance: 4.44653e-06 |
Significance: 0.00895332 |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 2.39363e-05 |
Significance: 0.00010697799999999999 |
| NK;IL2+IL12+;A;CL |
Significance: 6.47003e-06 |
Significance: 0.00125944 |
| NCR+ILC3;A;CL |
Significance: 1.90834e-06 |
Significance: 0.000504234 |
| ILC2_Nippo;A;CL |
Significance: 6.45124e-07 |
Significance: 2.1404e-06 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.00011556 |
Significance: 3.02861e-06 |
| ILC2;A;CL |
Significance: 1.17247e-05 |
Significance: 0.015986 |
| Th2_nippo;A;CL |
Significance: 4.3331900000000004e-06 |
Significance: 3.0604699999999995e-05 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.047808300000000005 |
Significance: 0.00456624 |
| ES;v6.5;A;GEO |
Significance: 1.14018e-05 |
Significance: 0.00014812200000000002 |
| Mammary_GLND;A;GEO |
Significance: 6.474109999999999e-06 |
Significance: 3.61055e-06 |
| ILC2+IL33+IL25;A;GEO |
Significance: 2.09885e-06 |
Significance: 0.00207652 |
| ILC1;A;GEO |
Significance: 2.7910400000000003e-06 |
Significance: 0.00637043 |
| ILC2;A;GEO |
Significance: 0.000299238 |
Significance: 0.0100463 |
| ILC3;A;GEO |
Significance: 6.93524e-07 |
Significance: 0.011106 |
| ILC1_AbxGRMFree;A;GEO |
Significance: 8.39668e-06 |
Significance: 0.019546200000000003 |
| ILC3_AbxGRMFree;A;GEO |
Significance: 5.53509e-06 |
Significance: 0.00876156 |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 4.52597e-05 |
Significance: 0.00673986 |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 4.95521e-07 |
Significance: 0.00238715 |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 7.52522e-05 |
Significance: 0.00468584 |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 3.14522e-05 |
Significance: 0.00092866 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 3.36744e-05 |
Significance: 0.00777962 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 3.01561e-05 |
Significance: 0.000409433 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 8.01207e-06 |
Significance: 0.00977538 |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 4.93813e-05 |
Significance: 0.000375758 |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 1.19102e-05 |
Significance: 0.00964528 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 2.6163000000000003e-05 |
Significance: 0.000323891 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 8.46573e-06 |
Significance: 0.00025658 |
| Erythroid;Ter119+;A;GEO |
Significance: 0.0103207 |
Significance: 0.0526194 |
| AML;AE9a;A;GEO |
Significance: 0.00661149 |
Significance: 0.05960700000000001 |
| DC_LPS;6h;A;GEO |
Significance: 1.08701e-05 |
Significance: 1.7323900000000002e-05 |
| DC_LPS;2h;A;GEO |
Significance: 5.81936e-06 |
Significance: 1.7861199999999998e-05 |
| DC_pBMD;A;GEO |
Significance: 1.88419e-05 |
Significance: 0.0005481969999999999 |
| SKN_EPTHL;A;GEO |
Significance: 1.5767600000000003e-06 |
Significance: 1.2678299999999999e-05 |
| BCK_SKN;A;GEO |
Significance: 7.07177e-06 |
Significance: 0.00017109799999999998 |
| ePyramidal_NRN;A;GEO |
Significance: 9.6884e-05 |
Significance: 3.3791e-08 |
| iPV_NRN;A;GEO |
Significance: 6.8813699999999995e-06 |
Significance: 9.1297e-08 |
| eCortical_NRN;A;GEO |
Significance: 9.55626e-05 |
Significance: 3.06817e-08 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 2.22589e-07 |
Significance: 0.00656349 |
| Corticotrope;A;GEO |
Significance: 3.934930000000001e-06 |
Significance: 0.000928126 |
| Melanotrope;A;GEO |
Significance: 3.6229699999999996e-05 |
Significance: 7.3985e-05 |
| Mammary_BptfKO;A;GEO |
Significance: 4.9475e-07 |
Significance: 2.83329e-07 |
| EPP;A;En |
Significance: 0.010271700000000002 |
Significance: 0.00535134 |
| pErythroblast;A;En |
Significance: 0.012368299999999999 |
Significance: 0.0490699 |
| MegP;A;En |
Significance: 0.00645514 |
Significance: 0.0223445 |
| pCMP;A;CL |
Significance: 0.00603437 |
Significance: 0.0289491 |
| DC_LPS;4h;A;En |
Significance: 3.6720999999999996e-05 |
Significance: 0.000183312 |
| DC;A;En |
Significance: 3.6212e-05 |
Significance: 1.46894e-06 |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.007176699999999999 |
Significance: 0.05522080000000001 |
| NIH3T3_FBROBLST;D;GEO |
Significance: 1.2782700000000001e-06 |
Significance: 3.30311e-07 |
| LNG;8wks;D;GEO |
Significance: 3.7446999999999996e-05 |
Significance: 0.0085653 |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 4.27231e-07 |
Significance: 6.46021e-08 |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 1.74054e-06 |
Significance: 0.00031272200000000003 |
| 416B_MP;CD34+;D;GEO |
Significance: 8.07403e-06 |
Significance: 8.18217e-05 |
| WHL_BRN;8wks;D;GEO |
Significance: 2.3102e-06 |
Significance: 1.19462e-05 |
| NIH3T3_FBROBLST;D;En |
Significance: 4.44075e-08 |
Significance: 4.54032e-07 |
| FBRBLST;8wks;D;En |
Significance: 3.69624e-06 |
Significance: 1.34729e-05 |
| 3T3-L1;FBRBLST;D;En |
Significance: 4.82137e-06 |
Significance: 1.06395e-06 |
| wES;LVR;E11.5;D.;En |
Significance: 0.0115515 |
Significance: 0.019064599999999998 |
| LNG;8wks;D;En |
Significance: 4.14688e-06 |
Significance: 0.000149072 |
| LNG;P0;D;En |
Significance: 2.70277e-06 |
Significance: 0.000858787 |
| Heart;P0;D;En |
Significance: 1.53523e-06 |
Significance: 4.28749e-05 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 3.70455e-05 |
Significance: 0.00101876 |
| Adipose;D;En |
Significance: 6.23026e-05 |
Significance: 8.639969999999999e-07 |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.0111164 |
Significance: 0.011607600000000001 |
| 416B_MP;CD34+;D;En |
Significance: 3.75095e-05 |
Significance: 1.74665e-05 |
| Muller;P12;D;En |
Significance: 2.8477600000000002e-06 |
Significance: 1.43772e-07 |
| WHL_BRN;8wks;D;En |
Significance: 0.000150836 |
Significance: 3.3214100000000004e-07 |
| wES;Telenchephalon;D;En |
Significance: 2.11889e-05 |
Significance: 5.716270000000001e-05 |
| LRG_INTSTN;8wks;D;En |
Significance: 1.62722e-05 |
Significance: 0.000467988 |
| STMCH;P0;D;En |
Significance: 1.5419799999999999e-06 |
Significance: 0.0118254 |
| SKLTL_Muscle;8wks;D;En |
Significance: 6.843970000000001e-05 |
Significance: 0.00575768 |
| 3134_mammaryADNCRCNM;D;En |
Significance: 6.88796e-07 |
Significance: 4.191439999999999e-05 |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 2.3221200000000003e-06 |
Significance: 2.7964000000000002e-05 |
| AML;D;En |
Significance: 7.490939999999999e-06 |
Significance: 0.00010012399999999999 |
| CH12.LX;D;En |
Significance: 0.0014923 |
Significance: 0.00125535 |
| MEF.GATA-1-ER;D;En |
Significance: 0.00847783 |
Significance: 0.058794500000000006 |
| MEL;D;En |
Significance: 0.00342436 |
Significance: 9.21126e-05 |
| NIH3T3;D;En |
Significance: 1.08111e-06 |
Significance: 1.2143799999999998e-06 |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 1.14357e-05 |
Significance: 1.3025200000000002e-06 |
| MN1;D;En |
Significance: 4.39269e-07 |
Significance: 1.1288599999999999e-05 |
| 3T3-L1;D;En |
Significance: 4.122330000000001e-08 |
Significance: 6.0477099999999996e-06 |
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.00756632 | Absent |
| naiveCD8;A;CL |
Significance: 4.94711e-06 | Absent |
| NK_SPLND;A;CL |
Significance: 1.3273e-07 | Absent |
| proB;A;CL |
Significance: 0.000349256 | Absent |
| matureB;A;CL |
Significance: 8.09898e-06 | Absent |
| B1_B;A;CL |
Significance: 2.50357e-06 | Absent |
| plasmaB;A;CL |
Significance: 4.23787e-06 | Absent |
| aB_LPS;A;CL |
Significance: 4.88925e-06 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 3.3082300000000003e-06 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 6.20104e-05 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 1.78571e-05 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.00120672 | Absent |
| Mast;A;CL |
Significance: 0.0005157240000000001 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 1.9735599999999998e-05 | Absent |
| Tfh_LCMV;A;CL |
Significance: 1.3808699999999999e-05 | Absent |
| Tfh;A;CL |
Significance: 5.33262e-05 | Absent |
| Tfh_mut;A;CL |
Significance: 0.00901872 | Absent |
| aNonTfh;A;CL |
Significance: 1.57882e-06 | Absent |
| aNonTfh_mut;A;CL |
Significance: 2.65839e-06 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 3.1608099999999997e-06 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.000496072 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 2.54158e-06 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.000175361 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 7.24748e-05 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 2.13732e-06 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 2.43e-06 | Absent |
| DP;A;CL |
Significance: 0.00035398300000000004 | Absent |
| DP3a;A;CL |
Significance: 0.00410866 | Absent |
| ES;E14;A;CL |
Significance: 2.06237e-05 | Absent |
| LRG_INTSTN;A;CL |
Significance: 6.90146e-07 | Absent |
| LNG;A;CL |
Significance: 3.47422e-05 | Absent |
| Muscle;A;CL |
Significance: 0.000122771 | Absent |
| Adipose;A;CL |
Significance: 6.02959e-07 | Absent |
| Mammary;A;CL |
Significance: 5.48243e-05 | Absent |
| STMCH;A;CL |
Significance: 0.000289947 | Absent |
| PNCRS;A;CL |
Significance: 1.3345400000000001e-06 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 5.15271e-07 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 9.60223e-07 | Absent |
| BRN;CRBLM;A;CL |
Significance: 2.30873e-06 | Absent |
| aB;CD180;A;CL |
Significance: 1.2848800000000001e-05 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.00807067 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.009910700000000001 | Absent |
| ILC2precrsr;A;CL |
Significance: 1.14592e-07 | Absent |
| ILC1;A;CL |
Significance: 2.7727999999999995e-06 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.00175424 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.000462022 | Absent |
| wCH12;A;CL |
Significance: 7.42466e-05 | Absent |
| CH12;med14;A;CL |
Significance: 0.000771658 | Absent |
| CLP;A;CL |
Significance: 3.67476e-05 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 4.87346e-07 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 5.82883e-06 | Absent |
| NTRPHL;A;GEO |
Significance: 0.00637733 | Absent |
| ES;J1;A;CL |
Significance: 0.00044719199999999996 | Absent |
| ES;E14;A;GEO |
Significance: 2.8333299999999996e-06 | Absent |
| ES;F1216;A;GEO |
Significance: 5.2278400000000004e-05 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 1.16964e-05 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 1.2901500000000002e-05 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 3.34844e-06 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.000838048 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 3.15877e-06 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 2.37314e-06 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 1.1455999999999998e-05 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.00010878299999999999 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 2.6786e-05 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 3.53657e-05 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 2.37361e-05 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 6.93639e-05 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 7.81217e-05 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.000161679 | Absent |
| iNKT;A;GEO |
Significance: 9.67381e-07 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.00077596 | Absent |
| B;B220_CD43;A;GEO |
Significance: 1.98737e-06 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 4.93641e-05 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 8.628879999999999e-07 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 2.73286e-05 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.022006099999999997 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.00033500699999999996 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.000670565 | Absent |
| NPC;F129;A;GEO |
Significance: 2.2325099999999997e-06 | Absent |
| NPC;G4;A;GEO |
Significance: 3.29873e-05 | Absent |
| NPC;Ch13;A;GEO |
Significance: 1.22284e-05 | Absent |
| NPC;mE6;A;GEO |
Significance: 2.83991e-06 | Absent |
| iVIP_NRN;A;GEO |
Significance: 3.45442e-05 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.00424124 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 8.91798e-05 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.00033785099999999996 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 8.81175e-05 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 4.28639e-06 | Absent |
| pMeg;A;En |
Significance: 0.00266695 | Absent |
| MegEP;A;CL |
Significance: 0.00841285 | Absent |
| pGMP;A;En |
Significance: 0.00250239 | Absent |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.00788083 | Absent |
| ES;D0;D;GEO |
Significance: 0.00934384 | Absent |
| LVR;8wks;D;GEO |
Significance: 0.0163691 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 1.4002299999999998e-08 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.00016893599999999998 | Absent |
| apTreg;D;GEO |
Significance: 0.00209698 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.00691582 | Absent |
| ES;E14;D;En |
Significance: 0.00901426 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.00591118 | Absent |
| KDNY;P0;D;En |
Significance: 4.29548e-05 | Absent |
| KDNY;8wks;D;En |
Significance: 0.0108963 | Absent |
| LVR;8wks;D;En |
Significance: 0.019625 | Absent |
| LVR;P0;D;En |
Significance: 2.52747e-06 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 4.65597e-05 | Absent |
| Heart;8wks;D;En |
Significance: 1.65414e-05 | Absent |
| RTN;D1;D;En |
Significance: 7.03624e-05 | Absent |
| CRBLM;D;En |
Significance: 1.12171e-07 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 3.03949e-05 | Absent |
| Fr_BRN;P0;D;En |
Significance: 8.55385e-06 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 1.56402e-05 | Absent |
| Spleen;8wks;D;En |
Significance: 0.000328612 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.00225986 | Absent |
| Cell type | Modisco | Homer |
|---|---|---|
| wCH12_drug;A;CL | Absent |
Significance: 4.92705e-06 |