# Parameters
data_name = "aNonTfh;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_26-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_26-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:45:26,284 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	activated non-Tfh (CD4+CD44+CXCR5-PD1-CD25-) WT
Cell Group	T cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	106947	85770	11.8858	55573249	11393586	0.2051	8333036	0.15	17265035	0.3108

Modelling Metadata

Metric	Value
auPRC	0.6142
Calibrated Recall at 50% FDR	0.208
Number of Positive Examples in Test Data	93110
Number of Negative Examples in Test Data	7977741
Imbalance Ratio in Test Data	0.0115
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #21

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 5920 SequenceContrib ScoresHyp_Contrib Scores	Erg, Ets1, Fli1, Etv4, Elk1, Etv2, Gabpa, Elk4, Etv5, Elk3, Etv6, Spi1, Etv3, XP_911724.4, Fev, Etv1, Elf2, Elf1, Elf4, Spib, Ehf, Elf5, Elf3, Spdef, Spic, Irf8, Irf4, Stat3, Stat4, Zscan10, Stat6
metacluster_1/pattern_1 # seqlets: 5566 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_2 # seqlets: 3494 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Sp2, Sp3, Klf3, Sp1, E2f4, Klf6, Klf7, Klf4, Klf8, Klf12, Klf1, Egr1, Zbtb17, Egr2, E2f1, Sp5, Klf5, Zfp281, Zfx, Zfp740, Egr3, Zbtb1
metacluster_1/pattern_3 # seqlets: 1507 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Stat1, Prdm1, Irf7, Stat2, Irf3, Irf9, Batf3
metacluster_1/pattern_4 # seqlets: 1234 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_5 # seqlets: 1210 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_6 # seqlets: 990 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Runx3, Cbfb, Gfi1b
metacluster_1/pattern_7 # seqlets: 761 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Usf2, Crem, Atf2, Jdp2, Atf7, Atf1, Creb5, Atf3, Fosl2, Jun, Fosl1, Nfil3
metacluster_1/pattern_8 # seqlets: 679 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42, Rfx1, Wt1
metacluster_1/pattern_9 # seqlets: 673 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_10 # seqlets: 620 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_11 # seqlets: 594 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfe3, Tfeb, Arntl, Tfec, Mitf, Bhlhe40, Srebf1, Arnt, Clock, Mlx, Npas2, Srebf2, Creb3l2, Tcfl5, Mycn, Max, Myc, Bhlhe41, Hlf, Rarg, Dbp, Xbp1
metacluster_1/pattern_12 # seqlets: 388 SequenceContrib ScoresHyp_Contrib Scores	Fosb, Junb, Fos, Jund, Batf, Bach2, Nfe2, Nfe2l2, Bach1, Mafa, Mafk
metacluster_1/pattern_13 # seqlets: 332 SequenceContrib ScoresHyp_Contrib Scores	Nfkb1, Rela, Relb, Nfkb2, Rel
metacluster_1/pattern_14 # seqlets: 327 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_15 # seqlets: 184 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_16 # seqlets: 174 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_17 # seqlets: 148 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_18 # seqlets: 143 SequenceContrib ScoresHyp_Contrib Scores	Tcf7l2, Lef1, Tcf3, Tcf7l1, Tcf7
metacluster_1/pattern_19 # seqlets: 120 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_20 # seqlets: 61 SequenceContrib ScoresHyp_Contrib Scores	Gata3, Gata1, Gata2, Gata4

Click here for Motifs by TF-MoDISco: #151

TF Name	Pattern(s)
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000792175
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000809924
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000792175
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000869335
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00097939
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 6.0443000000000004e-05
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00104773
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000900447
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00019674400000000003
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000900447
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000792175
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.052601999999999996
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00081319
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00081319
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000839949
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000938395
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00587191
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00342977
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00361981
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00519478 metacluster_1/pattern_3 0.00111381
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00841542
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0242027
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0213935
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.015313499999999999
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.05539259999999999
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0242027 metacluster_1/pattern_3 2.81801e-06
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.026798900000000004 metacluster_1/pattern_3 0.040849
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0508471
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0508471
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_0 0.05184400000000001
Stat6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.05184400000000001
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_1 4.93665e-16
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_1 1.54488e-07
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00150026
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.14162e-06 metacluster_1/pattern_8 2.1038e-05 metacluster_1/pattern_19 0.00344966
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.0702e-05 metacluster_1/pattern_8 0.00104997 metacluster_1/pattern_19 0.0100867
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.97085e-05 metacluster_1/pattern_8 0.057765
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00043538400000000003 metacluster_1/pattern_8 0.000636621 metacluster_1/pattern_19 0.017106599999999996
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00043538400000000003
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000667889
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000710158
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0129386
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000949373
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.012822499999999999
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0466907
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0343834
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00613507 metacluster_1/pattern_8 0.0103677
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.036896899999999996
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.013030400000000001
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0209419
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0209419
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0239952
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.034801 metacluster_1/pattern_4 0.043216199999999996 metacluster_1/pattern_8 0.0103677 metacluster_1/pattern_19 0.017106599999999996
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.035835900000000004
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0466907
Zbtb1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.055245100000000005
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_3 3.3011199999999994e-16
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000923545
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_3 1.9764000000000003e-05
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_3 7.95663e-05
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000115365
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000461035
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00062195
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00210778
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0101719
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 7.14913e-06
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_5 6.11788e-13
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_5 1.711e-09
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_5 1.4459799999999998e-08
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 4.515e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_5 4.515e-06
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.000365844
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.010081399999999999
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00157796
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00402269
Gfi1b	Pattern Name Modisco Significance metacluster_1/pattern_6 0.036359800000000005
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00140417 metacluster_1/pattern_11 0.0253731
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000315049 metacluster_1/pattern_11 0.00631051
Crem	Pattern Name Modisco Significance metacluster_1/pattern_7 0.013834299999999999
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00122105 metacluster_1/pattern_11 0.0488168
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0016640000000000001 metacluster_1/pattern_11 0.05797080000000001 metacluster_1/pattern_12 6.94988e-05
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000679433 metacluster_1/pattern_11 0.028618400000000002
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0156969 metacluster_1/pattern_11 0.0213227
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00206115
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00770719 metacluster_1/pattern_12 3.04501e-06
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0163039 metacluster_1/pattern_12 8.34597e-05
Jun	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0249885 metacluster_1/pattern_12 0.0331514
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0325309 metacluster_1/pattern_12 0.046943900000000004
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.043317699999999994
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_8 3.03938e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_8 5.47164e-06
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0103677
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.026092 metacluster_1/pattern_14 5.07226e-08
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0376409
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_9 9.85074e-21
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_9 9.85074e-21
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_9 8.62329e-14
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.012068299999999999
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000611476
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00019024099999999998
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00750382
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000612716
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000379239
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_11 0.013743100000000001
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.023851400000000002
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0488168
Clock	Pattern Name Modisco Significance metacluster_1/pattern_11 0.010904700000000002
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00634181
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00415995
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00634181
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0226979
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0107639
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0119043
Max	Pattern Name Modisco Significance metacluster_1/pattern_11 0.017221200000000002
Myc	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0213227
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0242378
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0342621
Rarg	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0342621
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_11 0.050628
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0590319
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_12 1.00694e-06
Junb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.024166999999999998
Fos	Pattern Name Modisco Significance metacluster_1/pattern_12 1.57882e-06
Jund	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0044115000000000005
Batf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00760641
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00214692
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00442948
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00461042
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00524975
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_12 0.038400800000000006
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_12 0.047356199999999994
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_13 7.3535e-05
Rela	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000266747
Relb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000266747
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000266747
Rel	Pattern Name Modisco Significance metacluster_1/pattern_13 0.017763
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_14 0.018855 metacluster_1/pattern_15 0.000375361
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_14 3.8717300000000005e-08 metacluster_1/pattern_15 2.77836e-07
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_14 9.92073e-05 metacluster_1/pattern_15 0.0101374
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0103073 metacluster_1/pattern_15 0.00624543
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_14 0.012444799999999999 metacluster_1/pattern_15 0.00399451
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_18 2.17354e-05
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.049058
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.00012270100000000002
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0017858000000000001
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0158412
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_19 8.351230000000001e-06
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_20 0.031261000000000004
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0152119
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0152119
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0375227

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #80

TF Name	Modisco	Homer
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000612716	Pattern Name Homer Significance motif17.motif 0.00485266
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00750382	Pattern Name Homer Significance motif17.motif 0.020060400000000003
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00587191	Pattern Name Homer Significance motif2.motif 0.0300466
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.012068299999999999	Pattern Name Homer Significance motif17.motif 0.024828
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_8 5.47164e-06	Pattern Name Homer Significance motif16.motif 3.3363500000000004e-07
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000809924	Pattern Name Homer Significance motif2.motif 1.1687999999999999e-05
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000900447	Pattern Name Homer Significance motif2.motif 0.00021961900000000003
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0213935	Pattern Name Homer Significance motif2.motif 0.0482175
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000949373	Pattern Name Homer Significance motif3.motif 0.00185463
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00019674400000000003	Pattern Name Homer Significance motif2.motif 3.97755e-07
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.023851400000000002	Pattern Name Homer Significance motif17.motif 0.04191690000000001
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00043538400000000003	Pattern Name Homer Significance motif3.motif 0.000391171
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00043538400000000003 metacluster_1/pattern_8 0.000636621 metacluster_1/pattern_19 0.017106599999999996	Pattern Name Homer Significance motif3.motif 0.00961274
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.034801 metacluster_1/pattern_4 0.043216199999999996 metacluster_1/pattern_8 0.0103677 metacluster_1/pattern_19 0.017106599999999996	Pattern Name Homer Significance motif3.motif 0.023461799999999998
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_5 1.4459799999999998e-08	Pattern Name Homer Significance motif9.motif 0.000159149
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 4.515e-06	Pattern Name Homer Significance motif9.motif 0.00849387
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0466907	Pattern Name Homer Significance motif3.motif 0.0592615
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0103677	Pattern Name Homer Significance motif16.motif 0.00128259
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 6.0443000000000004e-05	Pattern Name Homer Significance motif2.motif 0.000798795
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_5 1.711e-09	Pattern Name Homer Significance motif9.motif 0.000159149
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0156969 metacluster_1/pattern_11 0.0213227	Pattern Name Homer Significance motif17.motif 0.0260503
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_1 4.93665e-16	Pattern Name Homer Significance motif1.motif 0.00050998 motif10.motif 0.0173901
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_9 9.85074e-21	Pattern Name Homer Significance motif5.motif 5.458049999999999e-06
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00361981	Pattern Name Homer Significance motif2.motif 0.0039343
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.015313499999999999	Pattern Name Homer Significance motif2.motif 0.011665700000000001
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000869335	Pattern Name Homer Significance motif2.motif 0.00262532
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000938395	Pattern Name Homer Significance motif2.motif 5.16364e-07
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_1 1.54488e-07	Pattern Name Homer Significance motif1.motif 0.000999071 motif10.motif 0.0173901
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00104773	Pattern Name Homer Significance motif2.motif 0.00349393
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_5 6.11788e-13	Pattern Name Homer Significance motif9.motif 8.77902e-06
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_11 0.013743100000000001	Pattern Name Homer Significance motif17.motif 0.00793707
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0242378	Pattern Name Homer Significance motif17.motif 0.015547
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000679433 metacluster_1/pattern_11 0.028618400000000002	Pattern Name Homer Significance motif17.motif 0.0193968
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00081319	Pattern Name Homer Significance motif2.motif 7.91426e-05
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0119043	Pattern Name Homer Significance motif17.motif 0.0558342
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000792175	Pattern Name Homer Significance motif2.motif 0.00366927
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 7.14913e-06	Pattern Name Homer Significance motif13.motif 6.3637699999999996e-06
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00019024099999999998	Pattern Name Homer Significance motif17.motif 0.0006889610000000001
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00613507 metacluster_1/pattern_8 0.0103677	Pattern Name Homer Significance motif3.motif 0.0567235
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0242027	Pattern Name Homer Significance motif2.motif 0.0554383
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0129386	Pattern Name Homer Significance motif3.motif 0.000806862
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00081319	Pattern Name Homer Significance motif2.motif 0.00010675
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000611476	Pattern Name Homer Significance motif17.motif 0.00452897
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0226979	Pattern Name Homer Significance motif17.motif 0.0562826
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00342977	Pattern Name Homer Significance motif2.motif 0.0131256
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00122105 metacluster_1/pattern_11 0.0488168	Pattern Name Homer Significance motif17.motif 0.0274176
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00097939	Pattern Name Homer Significance motif2.motif 0.000166025
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0343834	Pattern Name Homer Significance motif3.motif 0.0310612
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.012822499999999999	Pattern Name Homer Significance motif3.motif 0.0241411
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 4.14162e-06 metacluster_1/pattern_8 2.1038e-05 metacluster_1/pattern_19 0.00344966	Pattern Name Homer Significance motif3.motif 0.00012102
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0107639	Pattern Name Homer Significance motif17.motif 0.0101194
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00140417 metacluster_1/pattern_11 0.0253731	Pattern Name Homer Significance motif17.motif 0.0278634
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_9 9.85074e-21	Pattern Name Homer Significance motif5.motif 2.5137599999999997e-06
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000792175	Pattern Name Homer Significance motif2.motif 3.49114e-06
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.97085e-05 metacluster_1/pattern_8 0.057765	Pattern Name Homer Significance motif3.motif 0.00019989099999999997
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0488168	Pattern Name Homer Significance motif17.motif 0.0481705
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000792175	Pattern Name Homer Significance motif2.motif 2.64887e-05
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0209419	Pattern Name Homer Significance motif3.motif 0.0310612
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000900447	Pattern Name Homer Significance motif2.motif 3.49114e-06
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00415995	Pattern Name Homer Significance motif17.motif 0.00507246
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000379239	Pattern Name Homer Significance motif17.motif 0.00225261
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0342621	Pattern Name Homer Significance motif17.motif 0.0593328
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00841542	Pattern Name Homer Significance motif2.motif 0.00561101
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000710158	Pattern Name Homer Significance motif3.motif 0.000806862
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_8 3.03938e-06	Pattern Name Homer Significance motif16.motif 0.00042156800000000004
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00634181	Pattern Name Homer Significance motif17.motif 0.00481242
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00150026	Pattern Name Homer Significance motif3.motif 0.033823
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00634181	Pattern Name Homer Significance motif17.motif 0.018650999999999997
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_19 8.351230000000001e-06	Pattern Name Homer Significance motif15.motif 0.000488899
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 1.0702e-05 metacluster_1/pattern_8 0.00104997 metacluster_1/pattern_19 0.0100867	Pattern Name Homer Significance motif3.motif 0.000273948
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_9 8.62329e-14	Pattern Name Homer Significance motif5.motif 5.39434e-05
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_5 4.515e-06	Pattern Name Homer Significance motif9.motif 0.00285157
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000315049 metacluster_1/pattern_11 0.00631051	Pattern Name Homer Significance motif17.motif 0.0363415
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.013030400000000001	Pattern Name Homer Significance motif3.motif 0.047065499999999996
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000667889	Pattern Name Homer Significance motif3.motif 0.000487449
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000839949	Pattern Name Homer Significance motif2.motif 0.00349393
Crem	Pattern Name Modisco Significance metacluster_1/pattern_7 0.013834299999999999	Pattern Name Homer Significance motif17.motif 0.039651900000000004
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.05539259999999999	Pattern Name Homer Significance motif2.motif 0.0430406
Clock	Pattern Name Modisco Significance metacluster_1/pattern_11 0.010904700000000002	Pattern Name Homer Significance motif17.motif 0.024828
Max	Pattern Name Modisco Significance metacluster_1/pattern_11 0.017221200000000002	Pattern Name Homer Significance motif17.motif 0.0433901

Unique TF-MoDISco TFs: #71

TF Name	Modisco	Homer
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0103073 metacluster_1/pattern_15 0.00624543	Absent
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_18 0.00012270100000000002	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0590319	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00206115	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_14 0.018855 metacluster_1/pattern_15 0.000375361	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00770719 metacluster_1/pattern_12 3.04501e-06	Absent
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0508471	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0213227	Absent
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.010081399999999999	Absent
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00519478 metacluster_1/pattern_3 0.00111381	Absent
Rel	Pattern Name Modisco Significance metacluster_1/pattern_13 0.017763	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_12 1.00694e-06	Absent
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0101719	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0209419	Absent
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0017858000000000001	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0163039 metacluster_1/pattern_12 8.34597e-05	Absent
Gfi1b	Pattern Name Modisco Significance metacluster_1/pattern_6 0.036359800000000005	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.026092 metacluster_1/pattern_14 5.07226e-08	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_3 1.9764000000000003e-05	Absent
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_3 3.3011199999999994e-16	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0376409	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00524975	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00461042	Absent
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0242027 metacluster_1/pattern_3 2.81801e-06	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_12 0.038400800000000006	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0325309 metacluster_1/pattern_12 0.046943900000000004	Absent
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.052601999999999996	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0044115000000000005	Absent
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_13 7.3535e-05	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0249885 metacluster_1/pattern_12 0.0331514	Absent
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_20 0.031261000000000004	Absent
Rarg	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0342621	Absent
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_18 2.17354e-05	Absent
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000115365	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_12 0.047356199999999994	Absent
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.000365844	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0466907	Absent
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000266747	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.043317699999999994	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.035835900000000004	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0239952	Absent
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00210778	Absent
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00157796	Absent
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0016640000000000001 metacluster_1/pattern_11 0.05797080000000001 metacluster_1/pattern_12 6.94988e-05	Absent
Stat6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.05184400000000001	Absent
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_3 7.95663e-05	Absent
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_0 0.05184400000000001	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000461035	Absent
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.026798900000000004 metacluster_1/pattern_3 0.040849	Absent
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_18 0.049058	Absent
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0375227	Absent
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0152119	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_14 3.8717300000000005e-08 metacluster_1/pattern_15 2.77836e-07	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00062195	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_11 0.050628	Absent
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_18 0.0158412	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.024166999999999998	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00760641	Absent
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_20 0.0152119	Absent
Relb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000266747	Absent
Zbtb1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.055245100000000005	Absent
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.036896899999999996	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00442948	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00214692	Absent
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00402269	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_14 0.012444799999999999 metacluster_1/pattern_15 0.00399451	Absent
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000923545	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_14 9.92073e-05 metacluster_1/pattern_15 0.0101374	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_12 1.57882e-06	Absent
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0508471	Absent
Rela	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000266747	Absent

Unique Homer TFs: #2

TF Name	Modisco	Homer
Irf6	Absent	Pattern Name Homer Significance motif2.motif 0.0482175
E2f7	Absent	Pattern Name Homer Significance motif3.motif 0.05601849999999999