# Parameters
data_name = "ES;ZhBTc4;2;D;GEO"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_199-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_199-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 19:26:04,012 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	Undifferentiated mouse embryonic stem cells (ZhBTc4)
Cell Group	ES cells and embryonic tissues
Experiment Name	DHS
Experiment Group	GEO

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	226999	162730	11.1828	97964123	27833864	0.2842	12548626	0.1281	42021088	0.429

Modelling Metadata

Metric	Value
auPRC	0.6699
Calibrated Recall at 50% FDR	0.186
Number of Positive Examples in Test Data	142314
Number of Negative Examples in Test Data	7928537
Imbalance Ratio in Test Data	0.0176
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #24

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 5746 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 5224 SequenceContrib ScoresHyp_Contrib Scores	Klf15, Maz, Klf1, Sp1, Klf6, Wt1, Sp2, Sp3, Sp4, Sp5, Klf4, Zbtb17, Klf7, Egr1, Klf8, Klf3, Zfx, Klf12, Klf5, Egr2, E2f4, Zfp281, Tfap2c, Sall4, Zfp740, Ptf1a, Tfap2b
metacluster_1/pattern_2 # seqlets: 2262 SequenceContrib ScoresHyp_Contrib Scores	Pou5f1, Nanog, Sox2, Pou2f2, Lef1, Sox30, Sox14, Sry, Sox6, Irx3
metacluster_1/pattern_3 # seqlets: 1222 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_4 # seqlets: 1093 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_5 # seqlets: 1061 SequenceContrib ScoresHyp_Contrib Scores	Sox4, Sox3, Sox12, Sox17, Sox5, Sox21, Sox11, Tcf7l2, Tcf7, Sox8, Tcf7l1, Sox7, Sox18
metacluster_1/pattern_6 # seqlets: 1019 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_7 # seqlets: 989 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_8 # seqlets: 978 SequenceContrib ScoresHyp_Contrib Scores	Tead4, Tead2, Tead1
metacluster_1/pattern_9 # seqlets: 780 SequenceContrib ScoresHyp_Contrib Scores	Zic2, Zic3, Zic1, Tcf12
metacluster_1/pattern_10 # seqlets: 702 SequenceContrib ScoresHyp_Contrib Scores	Tfec, Usf1, Tfeb, Srebf1, Arntl, Bhlhe40, Mitf, Usf2, Tfe3, Mlx, Clock, Arnt, Srebf2, Npas2, Tcfl5, Bhlhe41, Atf1, Creb3l2, Dbp, Hlf, Arnt2, Max, Mlxip, Xbp1
metacluster_1/pattern_11 # seqlets: 675 SequenceContrib ScoresHyp_Contrib Scores	Gabpa, Elf1, Elk1, Fli1, Elk4, Elk3, Ets1, Erg, Etv5, Fev, Elf5, Etv1, Etv4, Elf2, Elf4, Etv6, Ehf, Etv3, XP_911724.4, Elf3, Etv2, Spi1, Spdef, Stat3
metacluster_1/pattern_12 # seqlets: 606 SequenceContrib ScoresHyp_Contrib Scores	Esrra, Rara, Esrrb, Esrrg, Nr5a2, Rxrg, Rxra, Rarg, Nr5a1, Nr4a2
metacluster_1/pattern_13 # seqlets: 590 SequenceContrib ScoresHyp_Contrib Scores	Rfx2, Rfx3, Rfx1, Rfx4, Rfx6, Rfx7
metacluster_1/pattern_14 # seqlets: 375 SequenceContrib ScoresHyp_Contrib Scores	Tcfcp2l1, Trp63
metacluster_1/pattern_15 # seqlets: 327 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_16 # seqlets: 299 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42
metacluster_1/pattern_17 # seqlets: 279 SequenceContrib ScoresHyp_Contrib Scores	Bach2, Nfe2l2, Nfe2, Bach1, Mafk, Mafa, Mafb, Mafg, Jun, Maff, Maf, Atf3, Fosl2, Fosb, Fosl1, Junb, Jund, Batf, Fos, Jdp2
metacluster_1/pattern_18 # seqlets: 227 SequenceContrib ScoresHyp_Contrib Scores	Rest
metacluster_1/pattern_19 # seqlets: 191 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Atf2, Atf7, Crem, Creb5, Nfil3
metacluster_1/pattern_20 # seqlets: 80 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_21 # seqlets: 76 SequenceContrib ScoresHyp_Contrib Scores	Tfap2a, Tfap2e
metacluster_1/pattern_22 # seqlets: 69 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_23 # seqlets: 51 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33

Click here for Motifs by TF-MoDISco: #167

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 1.95901e-15 metacluster_1/pattern_6 0.0125819 metacluster_1/pattern_9 0.045941699999999995
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 6.70376e-10
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_1 8.2271e-05 metacluster_1/pattern_16 0.05315399999999999
Maz	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000158572 metacluster_1/pattern_16 0.00546643
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0262586
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00141196 metacluster_1/pattern_16 6.19831e-05
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00016481400000000002 metacluster_1/pattern_16 0.026581099999999996
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00016481400000000002 metacluster_1/pattern_16 0.0170835
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000221266 metacluster_1/pattern_16 0.000124383
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000337583 metacluster_1/pattern_16 0.000420011
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00280727
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00044365 metacluster_1/pattern_16 0.0452802
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0013718
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00101807 metacluster_1/pattern_16 0.020967700000000002
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00141196
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.049735800000000004 metacluster_1/pattern_16 0.0554196
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00141196
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00141196 metacluster_1/pattern_16 0.0448476
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.015247499999999999 metacluster_1/pattern_16 0.020967700000000002 metacluster_1/pattern_19 0.017643799999999998
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00188038
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00193391
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00261648 metacluster_1/pattern_16 0.023078400000000002
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00273105
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.024983500000000002
Tfap2c	Pattern Name Modisco Significance metacluster_1/pattern_1 0.010009700000000002 metacluster_1/pattern_21 0.0119722
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.013112
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0160216
Ptf1a	Pattern Name Modisco Significance metacluster_1/pattern_1 0.041891399999999995
Tfap2b	Pattern Name Modisco Significance metacluster_1/pattern_1 0.049735800000000004 metacluster_1/pattern_21 0.011334200000000001
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_2 1.7321000000000001e-06 metacluster_1/pattern_5 0.014212899999999999
Nanog	Pattern Name Modisco Significance metacluster_1/pattern_2 1.22874e-10 metacluster_1/pattern_5 0.0013217
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_2 1.2827200000000001e-06 metacluster_1/pattern_5 0.00724777
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.026813599999999996
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0304483 metacluster_1/pattern_5 0.024765799999999998
Sox30	Pattern Name Modisco Significance metacluster_1/pattern_2 0.03571919999999999 metacluster_1/pattern_5 0.00724777
Sox14	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0569535 metacluster_1/pattern_5 0.018394099999999997
Sry	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0569535 metacluster_1/pattern_5 0.0232224
Sox6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0569535 metacluster_1/pattern_5 0.0126205
Irx3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0569535
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 4.1296000000000007e-11
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 3.61666e-10
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 2.32495e-09
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 1.64942e-08
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 1.14076e-05
Sox4	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00547122
Sox3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00724777
Sox12	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00724777
Sox17	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0113705
Sox5	Pattern Name Modisco Significance metacluster_1/pattern_5 0.018394099999999997
Sox21	Pattern Name Modisco Significance metacluster_1/pattern_5 0.018394099999999997
Sox11	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0214261
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0222448
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_5 0.027167300000000002
Sox8	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0273041
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0286096
Sox7	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0286096
Sox18	Pattern Name Modisco Significance metacluster_1/pattern_5 0.034187999999999996
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_7 4.9868e-10
Tead4	Pattern Name Modisco Significance metacluster_1/pattern_8 4.50628e-05
Tead2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000357748
Tead1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00130498
Zic2	Pattern Name Modisco Significance metacluster_1/pattern_9 5.48175e-13
Zic3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.034766000000000005
Zic1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0419894
Tcf12	Pattern Name Modisco Significance metacluster_1/pattern_9 0.045941699999999995
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00274686
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00288457 metacluster_1/pattern_19 0.00509059
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00144039
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0562284 metacluster_1/pattern_19 0.059539999999999996
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00918688
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00437754
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00203913
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00274686 metacluster_1/pattern_19 2.93585e-05
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00353573 metacluster_1/pattern_19 0.0485983
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0260971
Clock	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000874423
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_10 0.034052099999999995
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00274686
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00288457
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00903556
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00918688
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00997981 metacluster_1/pattern_19 0.025221
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.04506
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0313761
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0376169 metacluster_1/pattern_19 0.059055899999999995
Arnt2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.03998
Max	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0479098
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0489014
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0552231
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00346394
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_11 4.34546e-08
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00346394
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00595809
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00491139
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00346394
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00680031
Erg	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00557213
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00337101
Fev	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00339409
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0119693
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00372312
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00595809
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0114965
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00453281
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00491139
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00680031
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00680031
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00680031
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.029773599999999997
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0221975
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0221975
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_11 0.029773599999999997
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0531706
Esrra	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00246512
Rara	Pattern Name Modisco Significance metacluster_1/pattern_12 6.24076e-05
Esrrb	Pattern Name Modisco Significance metacluster_1/pattern_12 9.88993e-05
Esrrg	Pattern Name Modisco Significance metacluster_1/pattern_12 9.500129999999999e-05
Nr5a2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0008257830000000001
Rxrg	Pattern Name Modisco Significance metacluster_1/pattern_12 9.88993e-05
Rxra	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000136738
Rarg	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000348895
Nr5a1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00249935
Nr4a2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0394704
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.057011900000000004
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00515627
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_13 1.68062e-07 metacluster_1/pattern_16 0.022862200000000003
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000101219
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00016047700000000002
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00192497
Tcfcp2l1	Pattern Name Modisco Significance metacluster_1/pattern_14 9.97446e-07
Trp63	Pattern Name Modisco Significance metacluster_1/pattern_14 0.033963099999999996
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_15 1.4642600000000002e-20
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_15 8.80675e-20
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_15 4.11281e-12
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_16 5.81614e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_16 5.81614e-06
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00799602
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_17 1.56425e-08
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_17 1.02625e-07
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_17 1.02625e-07
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_17 8.61827e-06
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000622239
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000542733
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00156418
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00155395
Jun	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00155395 metacluster_1/pattern_19 0.0471819
Maff	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00156418
Maf	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00186305
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00251537 metacluster_1/pattern_19 0.0148504
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00510732 metacluster_1/pattern_19 0.0177487
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00419143
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00506684 metacluster_1/pattern_19 0.059055899999999995
Junb	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00506684
Jund	Pattern Name Modisco Significance metacluster_1/pattern_17 0.057382100000000005
Batf	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0507994
Fos	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00788083
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.015371100000000002 metacluster_1/pattern_19 0.000710857
Rest	Pattern Name Modisco Significance metacluster_1/pattern_18 1.91445e-20
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00243129
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.000868336
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_19 0.000374059
Crem	Pattern Name Modisco Significance metacluster_1/pattern_19 0.012764600000000001
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_19 0.000118323
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0592706
Tfap2a	Pattern Name Modisco Significance metacluster_1/pattern_21 0.0427974
Tfap2e	Pattern Name Modisco Significance metacluster_1/pattern_21 0.00103843
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_23 2.6185900000000003e-05

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #82

TF Name	Modisco	Homer
Sox11	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0214261	Pattern Name Homer Significance motif7.motif 0.0219407
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00141196	Pattern Name Homer Significance motif2.motif 8.77858e-09
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 6.70376e-10	Pattern Name Homer Significance motif1.motif 7.472089999999999e-06
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00288457	Pattern Name Homer Significance motif13.motif 0.011398
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00251537 metacluster_1/pattern_19 0.0148504	Pattern Name Homer Significance motif13.motif 0.0223109
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0489014	Pattern Name Homer Significance motif13.motif 0.056453699999999996
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00288457 metacluster_1/pattern_19 0.00509059	Pattern Name Homer Significance motif13.motif 0.0108408
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 3.61666e-10	Pattern Name Homer Significance motif11.motif 0.000350525
Nanog	Pattern Name Modisco Significance metacluster_1/pattern_2 1.22874e-10 metacluster_1/pattern_5 0.0013217	Pattern Name Homer Significance motif3.motif 7.92649e-09 motif7.motif 0.00556568
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000221266 metacluster_1/pattern_16 0.000124383	Pattern Name Homer Significance motif2.motif 0.00740809
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_19 0.000868336	Pattern Name Homer Significance motif13.motif 0.020220699999999998
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0260971	Pattern Name Homer Significance motif13.motif 0.0111273
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00016481400000000002 metacluster_1/pattern_16 0.026581099999999996	Pattern Name Homer Significance motif2.motif 0.00042096699999999996
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 2.32495e-09	Pattern Name Homer Significance motif7.motif 0.05895209999999999 motif11.motif 0.000642611
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_15 1.4642600000000002e-20	Pattern Name Homer Significance motif8.motif 1.08034e-08
Sox21	Pattern Name Modisco Significance metacluster_1/pattern_5 0.018394099999999997	Pattern Name Homer Significance motif7.motif 0.0562095
Zic2	Pattern Name Modisco Significance metacluster_1/pattern_9 5.48175e-13	Pattern Name Homer Significance motif1.motif 0.0190206
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.04506	Pattern Name Homer Significance motif13.motif 0.0274554
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00243129	Pattern Name Homer Significance motif13.motif 0.023596799999999998
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00437754	Pattern Name Homer Significance motif13.motif 0.0111273
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00353573 metacluster_1/pattern_19 0.0485983	Pattern Name Homer Significance motif13.motif 0.00183128
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_19 0.000374059	Pattern Name Homer Significance motif13.motif 0.0449561
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00203913	Pattern Name Homer Significance motif13.motif 0.00278244
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_15 4.11281e-12	Pattern Name Homer Significance motif8.motif 5.99432e-06
Nr5a2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0008257830000000001	Pattern Name Homer Significance motif12.motif 0.00874741
Rara	Pattern Name Modisco Significance metacluster_1/pattern_12 6.24076e-05	Pattern Name Homer Significance motif12.motif 0.0201138
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 1.64942e-08	Pattern Name Homer Significance motif11.motif 0.000786024
Rxrg	Pattern Name Modisco Significance metacluster_1/pattern_12 9.88993e-05	Pattern Name Homer Significance motif12.motif 0.00420516
Irx3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0569535	Pattern Name Homer Significance motif3.motif 0.0535034
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_10 0.034052099999999995	Pattern Name Homer Significance motif13.motif 0.0428745
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00903556	Pattern Name Homer Significance motif13.motif 0.0242862
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 1.14076e-05	Pattern Name Homer Significance motif7.motif 0.05708049999999999 motif11.motif 0.00276099
Rarg	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000348895	Pattern Name Homer Significance motif12.motif 0.00300698 motif13.motif 0.0380167
Sox17	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0113705	Pattern Name Homer Significance motif7.motif 0.00333486
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0013718	Pattern Name Homer Significance motif2.motif 1.82815e-05
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00188038	Pattern Name Homer Significance motif2.motif 2.2097e-05
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 4.1296000000000007e-11	Pattern Name Homer Significance motif11.motif 0.000642611
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00274686	Pattern Name Homer Significance motif13.motif 0.00236316
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00280727	Pattern Name Homer Significance motif2.motif 0.051556399999999995
Sox3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00724777	Pattern Name Homer Significance motif7.motif 0.00250399
Sox6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0569535 metacluster_1/pattern_5 0.0126205	Pattern Name Homer Significance motif7.motif 0.0161626
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00273105	Pattern Name Homer Significance motif2.motif 0.030958199999999998
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00261648 metacluster_1/pattern_16 0.023078400000000002	Pattern Name Homer Significance motif2.motif 0.025056799999999997
Nr5a1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00249935	Pattern Name Homer Significance motif12.motif 0.00420516
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_2 1.2827200000000001e-06 metacluster_1/pattern_5 0.00724777	Pattern Name Homer Significance motif3.motif 1.40381e-07 motif7.motif 0.0183668
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_11 0.029773599999999997	Pattern Name Homer Significance motif9.motif 0.039983
Sox30	Pattern Name Modisco Significance metacluster_1/pattern_2 0.03571919999999999 metacluster_1/pattern_5 0.00724777	Pattern Name Homer Significance motif7.motif 0.015510299999999998
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00274686 metacluster_1/pattern_19 2.93585e-05	Pattern Name Homer Significance motif13.motif 0.00743175
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00510732 metacluster_1/pattern_19 0.0177487	Pattern Name Homer Significance motif13.motif 0.057825800000000004
Crem	Pattern Name Modisco Significance metacluster_1/pattern_19 0.012764600000000001	Pattern Name Homer Significance motif13.motif 0.013740299999999999
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00274686	Pattern Name Homer Significance motif2.motif 0.0507737 motif13.motif 0.0449561
Nr4a2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0394704	Pattern Name Homer Significance motif12.motif 0.0465482
Sry	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0569535 metacluster_1/pattern_5 0.0232224	Pattern Name Homer Significance motif7.motif 0.0183668
Esrrg	Pattern Name Modisco Significance metacluster_1/pattern_12 9.500129999999999e-05	Pattern Name Homer Significance motif12.motif 0.00141002
Esrrb	Pattern Name Modisco Significance metacluster_1/pattern_12 9.88993e-05	Pattern Name Homer Significance motif12.motif 0.00936355
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00918688	Pattern Name Homer Significance motif13.motif 0.012808400000000001
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00141196 metacluster_1/pattern_16 0.0448476	Pattern Name Homer Significance motif2.motif 4.43744e-06
Max	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0479098	Pattern Name Homer Significance motif13.motif 0.05121619999999999
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00144039	Pattern Name Homer Significance motif13.motif 0.000962588
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0562284 metacluster_1/pattern_19 0.059539999999999996	Pattern Name Homer Significance motif13.motif 0.00963986
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00997981 metacluster_1/pattern_19 0.025221	Pattern Name Homer Significance motif13.motif 0.0111273
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.049735800000000004 metacluster_1/pattern_16 0.0554196	Pattern Name Homer Significance motif2.motif 0.0358522
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 1.95901e-15 metacluster_1/pattern_6 0.0125819 metacluster_1/pattern_9 0.045941699999999995	Pattern Name Homer Significance motif1.motif 1.09228e-07
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00141196	Pattern Name Homer Significance motif2.motif 9.29274e-10
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_2 1.7321000000000001e-06 metacluster_1/pattern_5 0.014212899999999999	Pattern Name Homer Significance motif3.motif 1.0219e-05 motif7.motif 0.0183668
Clock	Pattern Name Modisco Significance metacluster_1/pattern_10 0.000874423	Pattern Name Homer Significance motif13.motif 0.00154443
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.015371100000000002 metacluster_1/pattern_19 0.000710857	Pattern Name Homer Significance motif13.motif 0.0328829
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00918688	Pattern Name Homer Significance motif13.motif 0.018675999999999998
Esrra	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00246512	Pattern Name Homer Significance motif12.motif 0.00364064
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0552231	Pattern Name Homer Significance motif13.motif 0.0274554
Zic3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.034766000000000005	Pattern Name Homer Significance motif1.motif 0.0190206
Rxra	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000136738	Pattern Name Homer Significance motif12.motif 0.00420516
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_19 0.000118323	Pattern Name Homer Significance motif13.motif 0.0170324
Sox14	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0569535 metacluster_1/pattern_5 0.018394099999999997	Pattern Name Homer Significance motif7.motif 0.05708049999999999
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_15 8.80675e-20	Pattern Name Homer Significance motif8.motif 2.7216700000000002e-08
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00193391	Pattern Name Homer Significance motif2.motif 1.7027e-05
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00141196 metacluster_1/pattern_16 6.19831e-05	Pattern Name Homer Significance motif2.motif 0.0389686
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000337583 metacluster_1/pattern_16 0.000420011	Pattern Name Homer Significance motif2.motif 0.00740809
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0262586	Pattern Name Homer Significance motif2.motif 0.000208299
Sox12	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00724777	Pattern Name Homer Significance motif7.motif 0.0219407
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.026813599999999996	Pattern Name Homer Significance motif3.motif 0.031620999999999996
Sox4	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00547122	Pattern Name Homer Significance motif7.motif 0.00990351

Unique TF-MoDISco TFs: #85

TF Name	Modisco	Homer
Tfap2e	Pattern Name Modisco Significance metacluster_1/pattern_21 0.00103843	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_17 1.02625e-07	Absent
Stat3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0531706	Absent
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_11 4.34546e-08	Absent
Tfap2b	Pattern Name Modisco Significance metacluster_1/pattern_1 0.049735800000000004 metacluster_1/pattern_21 0.011334200000000001	Absent
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_16 5.81614e-06	Absent
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_5 0.027167300000000002	Absent
Erg	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00557213	Absent
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0114965	Absent
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00680031	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_17 8.61827e-06	Absent
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00595809	Absent
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00595809	Absent
Trp63	Pattern Name Modisco Significance metacluster_1/pattern_14 0.033963099999999996	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000542733	Absent
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00491139	Absent
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0222448	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000101219	Absent
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00346394	Absent
Zic1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0419894	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.057011900000000004	Absent
Arnt2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.03998	Absent
Sox8	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0273041	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00155395 metacluster_1/pattern_19 0.0471819	Absent
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0221975	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00044365 metacluster_1/pattern_16 0.0452802	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0313761	Absent
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_1 8.2271e-05 metacluster_1/pattern_16 0.05315399999999999	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00506684	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0160216	Absent
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0304483 metacluster_1/pattern_5 0.024765799999999998	Absent
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0119693	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00788083	Absent
Maf	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00186305	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00016047700000000002	Absent
Fev	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00339409	Absent
Sox7	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0286096	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_23 2.6185900000000003e-05	Absent
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00372312	Absent
Maff	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00156418	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_17 0.057382100000000005	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00016481400000000002 metacluster_1/pattern_16 0.0170835	Absent
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.029773599999999997	Absent
Tfap2c	Pattern Name Modisco Significance metacluster_1/pattern_1 0.010009700000000002 metacluster_1/pattern_21 0.0119722	Absent
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00346394	Absent
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00680031	Absent
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00156418	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000622239	Absent
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00453281	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00515627	Absent
Tead1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00130498	Absent
Rest	Pattern Name Modisco Significance metacluster_1/pattern_18 1.91445e-20	Absent
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00680031	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00419143	Absent
Tfap2a	Pattern Name Modisco Significance metacluster_1/pattern_21 0.0427974	Absent
Ptf1a	Pattern Name Modisco Significance metacluster_1/pattern_1 0.041891399999999995	Absent
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.013112	Absent
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00346394	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_13 1.68062e-07 metacluster_1/pattern_16 0.022862200000000003	Absent
Tead4	Pattern Name Modisco Significance metacluster_1/pattern_8 4.50628e-05	Absent
Sox18	Pattern Name Modisco Significance metacluster_1/pattern_5 0.034187999999999996	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00192497	Absent
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00680031	Absent
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0286096	Absent
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00155395	Absent
Tcfcp2l1	Pattern Name Modisco Significance metacluster_1/pattern_14 9.97446e-07	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000158572 metacluster_1/pattern_16 0.00546643	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_17 1.02625e-07	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_17 1.56425e-08	Absent
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00491139	Absent
Tead2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000357748	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00506684 metacluster_1/pattern_19 0.059055899999999995	Absent
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_7 4.9868e-10	Absent
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00101807 metacluster_1/pattern_16 0.020967700000000002	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0507994	Absent
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0221975	Absent
Sox5	Pattern Name Modisco Significance metacluster_1/pattern_5 0.018394099999999997	Absent
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00799602	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.015247499999999999 metacluster_1/pattern_16 0.020967700000000002 metacluster_1/pattern_19 0.017643799999999998	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0376169 metacluster_1/pattern_19 0.059055899999999995	Absent
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00337101	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.024983500000000002	Absent
Tcf12	Pattern Name Modisco Significance metacluster_1/pattern_9 0.045941699999999995	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0592706	Absent
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_16 5.81614e-06	Absent

Unique Homer TFs: #9

TF Name	Modisco	Homer
Nr2c1	Absent	Pattern Name Homer Significance motif12.motif 0.0391728
Nr2f1	Absent	Pattern Name Homer Significance motif12.motif 0.0465482
Snai1	Absent	Pattern Name Homer Significance motif1.motif 0.0331605
Myc	Absent	Pattern Name Homer Significance motif13.motif 0.023596799999999998
E2f1	Absent	Pattern Name Homer Significance motif2.motif 0.0389686
Smad3	Absent	Pattern Name Homer Significance motif7.motif 0.041876800000000006
Nr2f2	Absent	Pattern Name Homer Significance motif12.motif 0.0391728
Sox9	Absent	Pattern Name Homer Significance motif7.motif 0.0227269
Mycn	Absent	Pattern Name Homer Significance motif13.motif 0.011398