# Parameters
data_name = "aB_CD40+IL4;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_17-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_17-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:44:21,508 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	aB aCD40+IL4
Cell Group	B cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	62573	43145	10.6735	82296493	6988313	0.0849	6872236	0.0835	26252920	0.3191

Modelling Metadata

Metric	Value
auPRC	0.7064
Calibrated Recall at 50% FDR	0.157
Number of Positive Examples in Test Data	43501
Number of Negative Examples in Test Data	8027350
Imbalance Ratio in Test Data	0.0054
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #19

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 5226 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 4689 SequenceContrib ScoresHyp_Contrib Scores	Etv6, Gabpa, Elk1, Ets1, Fli1, Erg, Spi1, Spib, Etv3, Elk3, XP_911724.4, Etv2, Elk4, Spic, Elf1, Etv5, Etv4, Elf4, Etv1, Irf4, Irf8, Elf2, Ehf, Elf3, Elf5, Fev, Spdef, Prdm1, Irf2, Irf3, Irf1
metacluster_1/pattern_2 # seqlets: 3848 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp3, Klf3, Sp1, Sp4, Egr1, Klf4, Zbtb17, Klf5, E2f4, Sp5, Klf7, Klf6, Zfp281, Klf8, Wt1, Klf12, Egr2, Maz, Klf1, E2f1, Klf15, Srebf2, Egr3, Zfp740
metacluster_1/pattern_3 # seqlets: 2160 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_4 # seqlets: 1793 SequenceContrib ScoresHyp_Contrib Scores	Nrf1, Zfx
metacluster_1/pattern_5 # seqlets: 1330 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Atf1, Atf7, Jdp2, Atf2, Crem, Creb5, Usf2, Atf3, Jun, Rxrb
metacluster_1/pattern_6 # seqlets: 1259 SequenceContrib ScoresHyp_Contrib Scores	Stat2, Irf7, Stat1, Irf9, Zscan10
metacluster_1/pattern_7 # seqlets: 1169 SequenceContrib ScoresHyp_Contrib Scores	Yy1, Taf1, Rfx1, Zfp42, Mxi1
metacluster_1/pattern_8 # seqlets: 977 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_9 # seqlets: 606 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfe3, Tfeb, Arntl, Tfec, Mitf, Bhlhe40, Srebf1, Clock, Arnt, Mlx, Npas2, Tcfl5, Creb3l2, Max, Bhlhe41, Mycn, Myc, Hlf, Dbp, Xbp1, Mlxip
metacluster_1/pattern_10 # seqlets: 392 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2
metacluster_1/pattern_11 # seqlets: 276 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6, Sox2, Pou5f1
metacluster_1/pattern_12 # seqlets: 248 SequenceContrib ScoresHyp_Contrib Scores	Nfkb1, Rela, Nfkb2, Relb, Rel
metacluster_1/pattern_13 # seqlets: 194 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_14 # seqlets: 184 SequenceContrib ScoresHyp_Contrib Scores	Junb, Fosb, Fosl2, Jund, Batf, Fos, Fosl1, Mafa, Bach2, Pknox1, Bach1
metacluster_1/pattern_15 # seqlets: 116 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_16 # seqlets: 103 SequenceContrib ScoresHyp_Contrib Scores	Mef2a, Mef2c, Mef2d
metacluster_1/pattern_17 # seqlets: 42 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_18 # seqlets: 39 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #139

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 2.40311e-12
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 2.65273e-08 metacluster_1/pattern_2 0.034350099999999995
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00152309 metacluster_1/pattern_15 0.0351819
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0027385 metacluster_1/pattern_5 0.00499642 metacluster_1/pattern_15 0.017577000000000002
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000169817 metacluster_1/pattern_5 0.0531563 metacluster_1/pattern_15 0.029612799999999998
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 3.82697e-05 metacluster_1/pattern_15 0.017577000000000002
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000478434 metacluster_1/pattern_15 0.0351819
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 4.15897e-05 metacluster_1/pattern_15 0.0158527
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000516936 metacluster_1/pattern_6 0.00427006
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 4.10144e-05 metacluster_1/pattern_6 8.428610000000001e-07
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 4.10144e-05 metacluster_1/pattern_15 0.0443469
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00015768 metacluster_1/pattern_15 0.0549332
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 5.13781e-05 metacluster_1/pattern_15 0.0418341
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 5.299649999999999e-05
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00015488 metacluster_1/pattern_15 0.0277399
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00037304300000000004 metacluster_1/pattern_6 0.0393174
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 7.78666e-05
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 7.78666e-05 metacluster_1/pattern_15 0.00773197
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00015768 metacluster_1/pattern_15 0.0158527
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000155458
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00019638200000000002 metacluster_1/pattern_15 0.00480729
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000169817 metacluster_1/pattern_6 0.0188447
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000179863 metacluster_1/pattern_6 4.04119e-14
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.016572999999999997
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000827701
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0027651999999999998
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0177565
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00268429 metacluster_1/pattern_5 0.051651800000000005
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00379377
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00758888 metacluster_1/pattern_6 0.004961999999999999
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00811118 metacluster_1/pattern_6 0.0180981
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0140589 metacluster_1/pattern_6 0.00057016
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.015434999999999999 metacluster_1/pattern_6 1.57279e-05
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 8.311339999999999e-10 metacluster_1/pattern_7 2.7028200000000003e-05 metacluster_1/pattern_13 0.000587539 metacluster_1/pattern_15 4.9605200000000004e-05
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 5.53702e-09 metacluster_1/pattern_7 0.000709804 metacluster_1/pattern_13 0.00202388 metacluster_1/pattern_15 0.00390248
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 8.69774e-08 metacluster_1/pattern_7 0.0420093 metacluster_1/pattern_15 0.00480729
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000318355 metacluster_1/pattern_7 0.000123582 metacluster_1/pattern_13 0.00336215 metacluster_1/pattern_15 0.00516235
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00130524 metacluster_1/pattern_15 0.0277399
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.026023900000000003 metacluster_1/pattern_15 0.013227500000000001
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00082122
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000176537 metacluster_1/pattern_7 0.00760607 metacluster_1/pattern_15 0.00970802
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000239909 metacluster_1/pattern_15 0.0196158
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000318355 metacluster_1/pattern_15 0.00135789
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00040935699999999995
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000601858
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0008136589999999999 metacluster_1/pattern_15 0.013881600000000001
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00164751 metacluster_1/pattern_15 0.0326632
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00110078
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00110078 metacluster_1/pattern_7 0.022253 metacluster_1/pattern_15 0.026034699999999997
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00111542
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0515842 metacluster_1/pattern_7 0.05140309999999999
Maz	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00345725 metacluster_1/pattern_7 0.0515692
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0201389
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0185009 metacluster_1/pattern_15 0.034556699999999996
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0185009
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0515842 metacluster_1/pattern_9 0.00358743
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0519865
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0519865
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 1.4381799999999998e-10
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 4.13687e-06
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 4.13687e-06
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 4.13687e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000109299
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.41226e-07
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_4 0.054735900000000004 metacluster_1/pattern_7 0.00409169 metacluster_1/pattern_13 0.0506105 metacluster_1/pattern_15 0.0158527
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0107038 metacluster_1/pattern_9 0.045431099999999995
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0130609 metacluster_1/pattern_9 0.015100899999999999
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00132944 metacluster_1/pattern_9 0.0253937
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00493017 metacluster_1/pattern_9 0.0582133 metacluster_1/pattern_14 0.00216332
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00230626 metacluster_1/pattern_9 0.0378904
Crem	Pattern Name Modisco Significance metacluster_1/pattern_5 0.051651800000000005
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00265497
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0039742 metacluster_1/pattern_9 0.00543378 metacluster_1/pattern_13 0.014044599999999999
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0196472 metacluster_1/pattern_14 0.000343418
Jun	Pattern Name Modisco Significance metacluster_1/pattern_5 0.022364 metacluster_1/pattern_14 0.000343418
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_5 0.05610980000000001
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0039759
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0039759
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00855548
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_6 0.010145200000000002
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_6 0.013276900000000001
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_7 2.09604e-06
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_7 2.09604e-06
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00720721 metacluster_1/pattern_11 2.03103e-12
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00722428
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0528193
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_8 2.88915e-22
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_8 2.88915e-22
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_8 9.870369999999999e-14
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00634466
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00226344
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000547858
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00628383
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00236434
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00121823
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00765618
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0276245
Clock	Pattern Name Modisco Significance metacluster_1/pattern_9 0.025062400000000002
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0323623
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0112072
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00368695
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00785184
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.023372
Max	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0128236
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_9 0.015100899999999999
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0163887
Myc	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0269789
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_9 0.023615599999999997
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0378904
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.048994199999999995
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_9 0.05213480000000001
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00610619
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000862647
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.025907
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_11 7.87594e-05
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000428331
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00189436
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0524281
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.053213300000000005
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_12 1.25949e-05
Rela	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000203584
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000203584
Relb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000636936
Rel	Pattern Name Modisco Significance metacluster_1/pattern_12 0.010528000000000001
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_13 2.01862e-05
Junb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000343418
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000394692
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000641143
Jund	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0339865
Batf	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00062785
Fos	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00120672
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00128835
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0285203
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0339865
Pknox1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0355495
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.056443499999999994
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_16 9.63438e-05
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_16 6.53543e-09
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_16 7.40745e-09

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #65

TF Name	Modisco	Homer
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000516936 metacluster_1/pattern_6 0.00427006	Pattern Name Homer Significance motif3.motif 0.029303899999999997
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 1.4381799999999998e-10	Pattern Name Homer Significance motif4.motif 2.97058e-09
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 4.13687e-06	Pattern Name Homer Significance motif4.motif 9.274250000000001e-07
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00111542	Pattern Name Homer Significance motif2.motif 0.0230871
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00019638200000000002 metacluster_1/pattern_15 0.00480729	Pattern Name Homer Significance motif3.motif 7.04633e-05
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0177565	Pattern Name Homer Significance motif3.motif 0.00169266
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 5.13781e-05 metacluster_1/pattern_15 0.0418341	Pattern Name Homer Significance motif3.motif 1.80878e-05
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 5.53702e-09 metacluster_1/pattern_7 0.000709804 metacluster_1/pattern_13 0.00202388 metacluster_1/pattern_15 0.00390248	Pattern Name Homer Significance motif2.motif 0.000244093
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00152309 metacluster_1/pattern_15 0.0351819	Pattern Name Homer Significance motif3.motif 0.00339942
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00015488 metacluster_1/pattern_15 0.0277399	Pattern Name Homer Significance motif3.motif 0.00034561199999999997
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00758888 metacluster_1/pattern_6 0.004961999999999999	Pattern Name Homer Significance motif14.motif 0.00953308
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 4.15897e-05 metacluster_1/pattern_15 0.0158527	Pattern Name Homer Significance motif3.motif 0.0005593169999999999
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 5.299649999999999e-05	Pattern Name Homer Significance motif3.motif 0.00177163
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000478434 metacluster_1/pattern_15 0.0351819	Pattern Name Homer Significance motif3.motif 0.00108481
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 8.69774e-08 metacluster_1/pattern_7 0.0420093 metacluster_1/pattern_15 0.00480729	Pattern Name Homer Significance motif2.motif 0.000447295
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 4.10144e-05 metacluster_1/pattern_6 8.428610000000001e-07	Pattern Name Homer Significance motif3.motif 0.0178433 motif14.motif 0.014954499999999999
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.016572999999999997	Pattern Name Homer Significance motif3.motif 0.0188468
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 4.13687e-06	Pattern Name Homer Significance motif4.motif 5.1664499999999995e-06
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00110078	Pattern Name Homer Significance motif2.motif 0.0009319780000000001
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000169817 metacluster_1/pattern_6 0.0188447	Pattern Name Homer Significance motif3.motif 0.040966 motif14.motif 0.014954499999999999
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000179863 metacluster_1/pattern_6 4.04119e-14	Pattern Name Homer Significance motif3.motif 0.0400785 motif14.motif 0.000791987
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 8.311339999999999e-10 metacluster_1/pattern_7 2.7028200000000003e-05 metacluster_1/pattern_13 0.000587539 metacluster_1/pattern_15 4.9605200000000004e-05	Pattern Name Homer Significance motif2.motif 0.000244093
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0201389	Pattern Name Homer Significance motif2.motif 0.0230871
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_13 2.01862e-05	Pattern Name Homer Significance motif10.motif 0.000292917
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0027385 metacluster_1/pattern_5 0.00499642 metacluster_1/pattern_15 0.017577000000000002	Pattern Name Homer Significance motif3.motif 0.00433741
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_7 2.09604e-06	Pattern Name Homer Significance motif12.motif 0.0546038
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 7.78666e-05 metacluster_1/pattern_15 0.00773197	Pattern Name Homer Significance motif3.motif 8.82115e-07
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 2.65273e-08 metacluster_1/pattern_2 0.034350099999999995	Pattern Name Homer Significance motif1.motif 0.000119484
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_7 2.09604e-06	Pattern Name Homer Significance motif12.motif 0.0546038
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00268429 metacluster_1/pattern_5 0.051651800000000005	Pattern Name Homer Significance motif3.motif 0.00877863
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0008136589999999999 metacluster_1/pattern_15 0.013881600000000001	Pattern Name Homer Significance motif2.motif 0.00523165
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_8 2.88915e-22	Pattern Name Homer Significance motif5.motif 7.1554e-07
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00811118 metacluster_1/pattern_6 0.0180981	Pattern Name Homer Significance motif14.motif 0.000791987
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00015768 metacluster_1/pattern_15 0.0549332	Pattern Name Homer Significance motif3.motif 0.000349275
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000155458	Pattern Name Homer Significance motif3.motif 8.88335e-05
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000318355 metacluster_1/pattern_15 0.00135789	Pattern Name Homer Significance motif2.motif 0.00101501
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.41226e-07	Pattern Name Homer Significance motif6.motif 1.7425000000000002e-07
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00082122	Pattern Name Homer Significance motif2.motif 0.0463626
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00379377	Pattern Name Homer Significance motif3.motif 0.00742117
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 4.13687e-06	Pattern Name Homer Significance motif4.motif 5.19159e-07
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.053213300000000005	Pattern Name Homer Significance motif20.motif 0.0313994
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000601858	Pattern Name Homer Significance motif2.motif 0.000447295
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00130524 metacluster_1/pattern_15 0.0277399	Pattern Name Homer Significance motif2.motif 0.0230871
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0039759	Pattern Name Homer Significance motif14.motif 0.014954499999999999
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_4 0.054735900000000004 metacluster_1/pattern_7 0.00409169 metacluster_1/pattern_13 0.0506105 metacluster_1/pattern_15 0.0158527	Pattern Name Homer Significance motif2.motif 0.0355079
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000176537 metacluster_1/pattern_7 0.00760607 metacluster_1/pattern_15 0.00970802	Pattern Name Homer Significance motif2.motif 0.048258300000000004
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.015434999999999999 metacluster_1/pattern_6 1.57279e-05	Pattern Name Homer Significance motif14.motif 0.00106295
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.026023900000000003 metacluster_1/pattern_15 0.013227500000000001	Pattern Name Homer Significance motif2.motif 0.0158673
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 7.78666e-05	Pattern Name Homer Significance motif3.motif 0.0008496360000000001
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0515842 metacluster_1/pattern_7 0.05140309999999999	Pattern Name Homer Significance motif2.motif 0.042462099999999996
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 3.82697e-05 metacluster_1/pattern_15 0.017577000000000002	Pattern Name Homer Significance motif3.motif 0.000888278
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000169817 metacluster_1/pattern_5 0.0531563 metacluster_1/pattern_15 0.029612799999999998	Pattern Name Homer Significance motif3.motif 0.000350648
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00037304300000000004 metacluster_1/pattern_6 0.0393174	Pattern Name Homer Significance motif3.motif 0.00322562
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0185009 metacluster_1/pattern_15 0.034556699999999996	Pattern Name Homer Significance motif2.motif 0.05619640000000001
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_8 9.870369999999999e-14	Pattern Name Homer Significance motif5.motif 6.13152e-05
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00015768 metacluster_1/pattern_15 0.0158527	Pattern Name Homer Significance motif3.motif 0.00205174
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000239909 metacluster_1/pattern_15 0.0196158	Pattern Name Homer Significance motif2.motif 0.0161822
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 2.40311e-12	Pattern Name Homer Significance motif1.motif 9.26843e-07
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000318355 metacluster_1/pattern_7 0.000123582 metacluster_1/pattern_13 0.00336215 metacluster_1/pattern_15 0.00516235	Pattern Name Homer Significance motif2.motif 0.00935395
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000827701	Pattern Name Homer Significance motif3.motif 0.0181107
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 4.10144e-05 metacluster_1/pattern_15 0.0443469	Pattern Name Homer Significance motif3.motif 1.34451e-05
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000109299	Pattern Name Homer Significance motif4.motif 0.000107267
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_8 2.88915e-22	Pattern Name Homer Significance motif5.motif 7.37528e-07
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0027651999999999998	Pattern Name Homer Significance motif3.motif 0.032913300000000006
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00610619	Pattern Name Homer Significance motif20.motif 0.016439099999999998

Unique TF-MoDISco TFs: #74

TF Name	Modisco	Homer
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00132944 metacluster_1/pattern_9 0.0253937	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.023372	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0128236	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.056443499999999994	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0269789	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00265497	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00765618	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000394692	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0039742 metacluster_1/pattern_9 0.00543378 metacluster_1/pattern_13 0.014044599999999999	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0519865	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00164751 metacluster_1/pattern_15 0.0326632	Absent
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0107038 metacluster_1/pattern_9 0.045431099999999995	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.048994199999999995	Absent
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0524281	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0112072	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0276245	Absent
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0130609 metacluster_1/pattern_9 0.015100899999999999	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0285203	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_9 0.023615599999999997	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00720721 metacluster_1/pattern_11 2.03103e-12	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_11 7.87594e-05	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000641143	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00110078 metacluster_1/pattern_7 0.022253 metacluster_1/pattern_15 0.026034699999999997	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0515842 metacluster_1/pattern_9 0.00358743	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00345725 metacluster_1/pattern_7 0.0515692	Absent
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_16 6.53543e-09	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0339865	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.025907	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00785184	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0196472 metacluster_1/pattern_14 0.000343418	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00121823	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00230626 metacluster_1/pattern_9 0.0378904	Absent
Zscan10	Pattern Name Modisco Significance metacluster_1/pattern_6 0.013276900000000001	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00368695	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00062785	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00236434	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_9 0.015100899999999999	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00226344	Absent
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_16 9.63438e-05	Absent
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0185009	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0039759	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00628383	Absent
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_6 0.010145200000000002	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00189436	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0528193	Absent
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_12 1.25949e-05	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0519865	Absent
Pknox1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0355495	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00128835	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0339865	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00120672	Absent
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00493017 metacluster_1/pattern_9 0.0582133 metacluster_1/pattern_14 0.00216332	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000428331	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0140589 metacluster_1/pattern_6 0.00057016	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0163887	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_5 0.022364 metacluster_1/pattern_14 0.000343418	Absent
Rela	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000203584	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_9 0.025062400000000002	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00855548	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00634466	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00040935699999999995	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0378904	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0323623	Absent
Relb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000636936	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_5 0.051651800000000005	Absent
Rel	Pattern Name Modisco Significance metacluster_1/pattern_12 0.010528000000000001	Absent
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_9 0.05213480000000001	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000343418	Absent
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_5 0.05610980000000001	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000862647	Absent
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00722428	Absent
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000203584	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000547858	Absent
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_16 7.40745e-09	Absent

Unique Homer TFs: #5

TF Name	Modisco	Homer
Zbtb1	Absent	Pattern Name Homer Significance motif2.motif 0.048258300000000004
Zic3	Absent	Pattern Name Homer Significance motif1.motif 0.049511599999999996
Snai1	Absent	Pattern Name Homer Significance motif1.motif 0.0359168
Nanog	Absent	Pattern Name Homer Significance motif20.motif 0.0313994
Zic2	Absent	Pattern Name Homer Significance motif1.motif 0.0431789