# Parameters
data_name = "aB_LPS+IL4_24h;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_88-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_88-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:59:46,561 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	Act B cell 24h
Cell Group	B cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	157830	124587	6.9236	154544859	NA	NA	NA	NA	NA	NA

Modelling Metadata

Metric	Value
auPRC	0.606
Calibrated Recall at 50% FDR	0.215
Number of Positive Examples in Test Data	67883
Number of Negative Examples in Test Data	8002968
Imbalance Ratio in Test Data	0.0084
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #21

Pattern Name	TF Name(s)	Modisco
metacluster_0/pattern_0 # seqlets: 4182 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp4, Sp3, Klf3, Sp1, E2f4, Klf6, Klf7, Klf4, Klf8, Klf1, Egr1, Klf12, Zbtb17, Egr2, E2f1, Klf5, Sp5, Zfp281, Zfx, Zfp740, Egr3
metacluster_0/pattern_1 # seqlets: 4034 SequenceContrib ScoresHyp_Contrib Scores	Gabpa, Etv6, Ets1, Erg, Fli1, Elk1, Spi1, Etv3, Elk4, Spib, Elk3, Etv4, XP_911724.4, Etv2, Etv5, Etv1, Spic, Elf4, Irf8, Irf4, Elf1, Elf2, Ehf, Elf5, Elf3, Fev, Spdef, Irf2, Prdm1, Irf3, Irf1
metacluster_0/pattern_2 # seqlets: 2189 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_0/pattern_3 # seqlets: 1538 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_0/pattern_4 # seqlets: 1366 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Pbx3, Foxi1
metacluster_0/pattern_5 # seqlets: 1007 SequenceContrib ScoresHyp_Contrib Scores	Irf7, Irf9, Stat2, Stat1, Irf5, Irf6
metacluster_0/pattern_6 # seqlets: 1002 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Jdp2, Atf2, Atf7, Creb5, Atf1, Crem, Atf3, Mafb, Jun, Fosl2, Fosl1, Nfil3, Tef, Rxrb
metacluster_0/pattern_7 # seqlets: 927 SequenceContrib ScoresHyp_Contrib Scores	Wt1, Rfx1, Maz, Klf15
metacluster_0/pattern_8 # seqlets: 842 SequenceContrib ScoresHyp_Contrib Scores	Zscan10
metacluster_0/pattern_9 # seqlets: 693 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42, Usf2, Mxi1
metacluster_0/pattern_10 # seqlets: 647 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfeb, Tfe3, Tfec, Arntl, Mitf, Srebf1, Bhlhe40, Clock, Arnt, Mlx, Npas2, Srebf2, Creb3l2, Mycn, Tcfl5, Max, Myc, Hlf, Bhlhe41, Dbp, Xbp1, Mlxip
metacluster_0/pattern_11 # seqlets: 645 SequenceContrib ScoresHyp_Contrib Scores	Thap11, Zfp143, Tbx2
metacluster_0/pattern_12 # seqlets: 521 SequenceContrib ScoresHyp_Contrib Scores	Batf, Nfe2, Nfe2l2, Jund, Bach2, Fos, Fosb, Bach1, Junb, Mafk, Mafa, Mafg, Maff, Maf
metacluster_0/pattern_13 # seqlets: 459 SequenceContrib ScoresHyp_Contrib Scores	Nfkb2, Nfkb1, Rela, Relb, Rel
metacluster_0/pattern_14 # seqlets: 364 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2, Pou5f1, Pou2f1, Nanog
metacluster_0/pattern_15 # seqlets: 302 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6
metacluster_0/pattern_16 # seqlets: 287 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_0/pattern_17 # seqlets: 234 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Runx3, Cbfb
metacluster_0/pattern_18 # seqlets: 158 SequenceContrib ScoresHyp_Contrib Scores
metacluster_0/pattern_19 # seqlets: 87 SequenceContrib ScoresHyp_Contrib Scores	Mef2d, Mef2a, Mef2c
metacluster_0/pattern_20 # seqlets: 75 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #154

TF Name	Pattern(s)
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_0 2.33918e-06 metacluster_0/pattern_3 0.047708 metacluster_0/pattern_7 2.4984699999999998e-05 metacluster_0/pattern_9 5.917919999999999e-06
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00141811
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_0 7.59418e-06 metacluster_0/pattern_7 0.000393952 metacluster_0/pattern_9 8.79149e-05
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_0 1.61344e-05 metacluster_0/pattern_7 0.015499 metacluster_0/pattern_9 0.0175014
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000432885 metacluster_0/pattern_7 4.9590600000000006e-05 metacluster_0/pattern_9 3.61646e-05
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000432885
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00071938 metacluster_0/pattern_7 0.026848400000000005
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00077981
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.012609299999999999
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00108711
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0467714
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0442566 metacluster_0/pattern_7 0.026848400000000005
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0171137
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00391853 metacluster_0/pattern_7 0.00848044 metacluster_0/pattern_9 0.00754022
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.041511900000000004 metacluster_0/pattern_7 0.0225899 metacluster_0/pattern_9 0.0411455
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0103587
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.016900099999999998
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0195822 metacluster_0/pattern_7 0.0458952 metacluster_0/pattern_9 0.0441205
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_0 0.019901
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0230767 metacluster_0/pattern_3 0.047708 metacluster_0/pattern_7 0.00114501 metacluster_0/pattern_9 0.00445796
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0442566
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0467714
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00190498
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00102373
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_1 4.98633e-05
Erg	Pattern Name Modisco Significance metacluster_0/pattern_1 5.07158e-05
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00017790700000000002 metacluster_0/pattern_7 0.0575229
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000160171
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000378454 metacluster_0/pattern_8 0.00225679
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_1 7.21609e-05
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_1 7.21609e-05
Spib	Pattern Name Modisco Significance metacluster_0/pattern_1 7.21609e-05 metacluster_0/pattern_5 0.019092599999999998 metacluster_0/pattern_8 3.87384e-08
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00025849200000000003
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000142286
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_1 9.10706e-05
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00013995200000000002
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000160171
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000187408
Spic	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00033374800000000003 metacluster_0/pattern_8 0.0143251
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000285565
Irf8	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000470306 metacluster_0/pattern_5 0.000215085 metacluster_0/pattern_8 4.27295e-10
Irf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000470306 metacluster_0/pattern_5 0.00101973 metacluster_0/pattern_8 4.494180000000001e-09
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00047960900000000004
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000751722
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00171344
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00226131 metacluster_0/pattern_8 0.0151821
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00304478
Fev	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00176234
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_1 0.056470299999999994
Irf2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.03546969999999999 metacluster_0/pattern_5 0.00121065 metacluster_0/pattern_8 0.00106228
Prdm1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.037631 metacluster_0/pattern_5 0.000581383 metacluster_0/pattern_8 0.0180229
Irf3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.056470299999999994 metacluster_0/pattern_5 0.0370205 metacluster_0/pattern_8 0.00106228
Irf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.056470299999999994 metacluster_0/pattern_5 3.47641e-08 metacluster_0/pattern_8 0.00143452
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_2 2.94746e-11
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_2 5.4337e-09
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_3 6.08274e-07
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_4 1.2413499999999998e-13
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_4 2.25736e-10
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_4 4.51032e-09
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_4 3.26145e-06
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_4 6.579349999999999e-06
Irf7	Pattern Name Modisco Significance metacluster_0/pattern_5 7.441669999999999e-06 metacluster_0/pattern_8 0.010657
Irf9	Pattern Name Modisco Significance metacluster_0/pattern_5 0.000255684
Stat2	Pattern Name Modisco Significance metacluster_0/pattern_5 0.000514189 metacluster_0/pattern_8 0.034005
Stat1	Pattern Name Modisco Significance metacluster_0/pattern_5 0.00121065
Irf5	Pattern Name Modisco Significance metacluster_0/pattern_5 0.00780578
Irf6	Pattern Name Modisco Significance metacluster_0/pattern_5 0.0396359
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00118801 metacluster_0/pattern_10 0.0554049
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00118801 metacluster_0/pattern_10 0.0541187 metacluster_0/pattern_12 3.27737e-05
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00363363 metacluster_0/pattern_10 0.0542691
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00139511 metacluster_0/pattern_10 0.0197546
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00104067
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0111005 metacluster_0/pattern_10 0.018880200000000003
Crem	Pattern Name Modisco Significance metacluster_0/pattern_6 0.012820400000000001
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_6 0.03558119999999999 metacluster_0/pattern_12 0.00228995
Mafb	Pattern Name Modisco Significance metacluster_0/pattern_6 0.011472 metacluster_0/pattern_12 0.0360266
Jun	Pattern Name Modisco Significance metacluster_0/pattern_6 0.058944500000000004 metacluster_0/pattern_12 0.019272499999999998
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0232021 metacluster_0/pattern_12 0.004529
Fosl1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.025069499999999998 metacluster_0/pattern_12 0.011428
Nfil3	Pattern Name Modisco Significance metacluster_0/pattern_6 0.042075
Tef	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0538548
Rxrb	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0538548
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00848044 metacluster_0/pattern_9 0.0129245
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00848044 metacluster_0/pattern_9 0.00556396 metacluster_0/pattern_15 7.76775e-12
Maz	Pattern Name Modisco Significance metacluster_0/pattern_7 0.023165099999999997 metacluster_0/pattern_9 0.0175014
Klf15	Pattern Name Modisco Significance metacluster_0/pattern_7 0.026848400000000005
Zscan10	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0213992
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_9 5.07182e-06
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_9 5.07182e-06
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0102995
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.036459899999999996 metacluster_0/pattern_10 0.00209615
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0368902
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00414699
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_10 0.000670311
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00209615
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00193336
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00369649
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0010724999999999999
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0380787
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0118411
Clock	Pattern Name Modisco Significance metacluster_0/pattern_10 0.03712530000000001
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0380787
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0118411
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00305049
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00400905
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0190253
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0554049
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0100524
Max	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0541187
Myc	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0173672
Hlf	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0197546
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0203912
Dbp	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0330519
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0380787
Mlxip	Pattern Name Modisco Significance metacluster_0/pattern_10 0.051255600000000005
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_11 4.36894e-22
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_11 3.3068100000000003e-21
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_11 8.69653e-12
Batf	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00219763
Nfe2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.000363847
Nfe2l2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00111152
Jund	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00219763
Bach2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00139447
Fos	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00175424
Fosb	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00190739
Bach1	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00190739
Junb	Pattern Name Modisco Significance metacluster_0/pattern_12 0.023171599999999997
Mafk	Pattern Name Modisco Significance metacluster_0/pattern_12 0.018264700000000002
Mafa	Pattern Name Modisco Significance metacluster_0/pattern_12 0.018204599999999998
Mafg	Pattern Name Modisco Significance metacluster_0/pattern_12 0.041411699999999996
Maff	Pattern Name Modisco Significance metacluster_0/pattern_12 0.0432555
Maf	Pattern Name Modisco Significance metacluster_0/pattern_12 0.0432555
Nfkb2	Pattern Name Modisco Significance metacluster_0/pattern_13 3.96681e-05
Nfkb1	Pattern Name Modisco Significance metacluster_0/pattern_13 3.96681e-05
Rela	Pattern Name Modisco Significance metacluster_0/pattern_13 0.000391954
Relb	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0007710519999999999
Rel	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0170565
Pou2f2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.035832199999999995
Pou5f1	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0576222
Pou2f1	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0576222
Nanog	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0576222
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_15 0.000299138
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0214982
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_15 2.02819e-05
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_15 0.000371945
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_15 0.000673086
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00184542
Runx1	Pattern Name Modisco Significance metacluster_0/pattern_17 0.00232278
Runx2	Pattern Name Modisco Significance metacluster_0/pattern_17 0.00612792
Runx3	Pattern Name Modisco Significance metacluster_0/pattern_17 0.00435057
Cbfb	Pattern Name Modisco Significance metacluster_0/pattern_17 0.00472558
Mef2d	Pattern Name Modisco Significance metacluster_0/pattern_19 8.37235e-08
Mef2a	Pattern Name Modisco Significance metacluster_0/pattern_19 0.000328371
Mef2c	Pattern Name Modisco Significance metacluster_0/pattern_19 2.42707e-06

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #75

TF Name	Modisco	Homer
Irf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000470306 metacluster_0/pattern_5 0.00101973 metacluster_0/pattern_8 4.494180000000001e-09	Pattern Name Homer Significance motif1.motif 0.0424402
Klf8	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00108711	Pattern Name Homer Significance motif3.motif 0.00234399
Mitf	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0010724999999999999	Pattern Name Homer Significance motif5.motif 0.04944930000000001
Egr1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0442566 metacluster_0/pattern_7 0.026848400000000005	Pattern Name Homer Significance motif3.motif 0.0158255
Ets1	Pattern Name Modisco Significance metacluster_0/pattern_1 4.98633e-05	Pattern Name Homer Significance motif1.motif 0.00229023
Spic	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00033374800000000003 metacluster_0/pattern_8 0.0143251	Pattern Name Homer Significance motif1.motif 0.00767735
Nfkb2	Pattern Name Modisco Significance metacluster_0/pattern_13 3.96681e-05	Pattern Name Homer Significance motif21.motif 0.011800299999999998
Sp3	Pattern Name Modisco Significance metacluster_0/pattern_0 7.59418e-06 metacluster_0/pattern_7 0.000393952 metacluster_0/pattern_9 8.79149e-05	Pattern Name Homer Significance motif3.motif 0.00234399
Klf5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.016900099999999998	Pattern Name Homer Significance motif3.motif 0.0299909
Xbp1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0380787	Pattern Name Homer Significance motif5.motif 0.051325499999999996
Bhlhe40	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0118411	Pattern Name Homer Significance motif5.motif 0.054542499999999994
Ehf	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00171344	Pattern Name Homer Significance motif1.motif 0.027799200000000003
Rela	Pattern Name Modisco Significance metacluster_0/pattern_13 0.000391954	Pattern Name Homer Significance motif21.motif 0.026940499999999996
Foxi1	Pattern Name Modisco Significance metacluster_0/pattern_4 6.579349999999999e-06	Pattern Name Homer Significance motif6.motif 0.00981565
Spib	Pattern Name Modisco Significance metacluster_0/pattern_1 7.21609e-05 metacluster_0/pattern_5 0.019092599999999998 metacluster_0/pattern_8 3.87384e-08	Pattern Name Homer Significance motif1.motif 0.027471100000000002
Etv5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000160171	Pattern Name Homer Significance motif1.motif 0.00011358
Yy1	Pattern Name Modisco Significance metacluster_0/pattern_9 5.07182e-06	Pattern Name Homer Significance motif15.motif 0.000298863
Elf3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00304478	Pattern Name Homer Significance motif1.motif 0.00533622
Klf4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.012609299999999999	Pattern Name Homer Significance motif3.motif 0.00135505
Tbx2	Pattern Name Modisco Significance metacluster_0/pattern_11 8.69653e-12	Pattern Name Homer Significance motif4.motif 2.6096100000000002e-05
Mlx	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0118411	Pattern Name Homer Significance motif5.motif 0.050171600000000004
Pbx3	Pattern Name Modisco Significance metacluster_0/pattern_4 3.26145e-06	Pattern Name Homer Significance motif6.motif 0.00277046
Gabpa	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00190498	Pattern Name Homer Significance motif1.motif 0.010030200000000001
Elf5	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00226131 metacluster_0/pattern_8 0.0151821	Pattern Name Homer Significance motif1.motif 0.00444107
Srebf1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0380787	Pattern Name Homer Significance motif5.motif 0.059249800000000005
Zfp42	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0102995	Pattern Name Homer Significance motif15.motif 7.48391e-05
Relb	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0007710519999999999	Pattern Name Homer Significance motif21.motif 0.013338599999999999
Klf6	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00071938 metacluster_0/pattern_7 0.026848400000000005	Pattern Name Homer Significance motif3.motif 0.007224800000000001
Sp4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00141811	Pattern Name Homer Significance motif3.motif 0.000838817
Bhlhe41	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0203912	Pattern Name Homer Significance motif5.motif 0.04944930000000001
Ctcfl	Pattern Name Modisco Significance metacluster_0/pattern_2 5.4337e-09	Pattern Name Homer Significance motif2.motif 2.2904e-07
Klf3	Pattern Name Modisco Significance metacluster_0/pattern_0 1.61344e-05 metacluster_0/pattern_7 0.015499 metacluster_0/pattern_9 0.0175014	Pattern Name Homer Significance motif3.motif 0.000393415
Sp2	Pattern Name Modisco Significance metacluster_0/pattern_0 2.33918e-06 metacluster_0/pattern_3 0.047708 metacluster_0/pattern_7 2.4984699999999998e-05 metacluster_0/pattern_9 5.917919999999999e-06	Pattern Name Homer Significance motif3.motif 0.00135505
Zfp143	Pattern Name Modisco Significance metacluster_0/pattern_11 3.3068100000000003e-21	Pattern Name Homer Significance motif4.motif 1.65007e-08
Etv6	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00102373	Pattern Name Homer Significance motif1.motif 0.010030200000000001
Etv2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00013995200000000002	Pattern Name Homer Significance motif1.motif 0.00846711
Nfyc	Pattern Name Modisco Significance metacluster_0/pattern_4 2.25736e-10	Pattern Name Homer Significance motif6.motif 1.09523e-05
Etv1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000187408	Pattern Name Homer Significance motif1.motif 0.000185907
Usf1	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00414699	Pattern Name Homer Significance motif5.motif 0.041320499999999996
Erg	Pattern Name Modisco Significance metacluster_0/pattern_1 5.07158e-05	Pattern Name Homer Significance motif1.motif 0.00143752
Elf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00047960900000000004	Pattern Name Homer Significance motif1.motif 0.00127643
Clock	Pattern Name Modisco Significance metacluster_0/pattern_10 0.03712530000000001	Pattern Name Homer Significance motif5.motif 0.04944930000000001
Etv4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000142286	Pattern Name Homer Significance motif1.motif 0.00533622
Fli1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00017790700000000002 metacluster_0/pattern_7 0.0575229	Pattern Name Homer Significance motif1.motif 0.00533622
Arntl	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00369649	Pattern Name Homer Significance motif5.motif 0.050171600000000004
Nfyb	Pattern Name Modisco Significance metacluster_0/pattern_4 1.2413499999999998e-13	Pattern Name Homer Significance motif6.motif 1.07234e-05
Elk3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00025849200000000003	Pattern Name Homer Significance motif1.motif 0.000383229
Spdef	Pattern Name Modisco Significance metacluster_0/pattern_1 0.056470299999999994	Pattern Name Homer Significance motif1.motif 0.0234305
Tfec	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00193336	Pattern Name Homer Significance motif5.motif 0.050171600000000004
Npas2	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00305049	Pattern Name Homer Significance motif5.motif 0.050171600000000004
Klf1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0467714	Pattern Name Homer Significance motif3.motif 0.0299909
Sp1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000432885 metacluster_0/pattern_7 4.9590600000000006e-05 metacluster_0/pattern_9 3.61646e-05	Pattern Name Homer Significance motif3.motif 0.012399700000000001
Usf2	Pattern Name Modisco Significance metacluster_0/pattern_9 0.036459899999999996 metacluster_0/pattern_10 0.00209615	Pattern Name Homer Significance motif5.motif 0.051325499999999996
Thap11	Pattern Name Modisco Significance metacluster_0/pattern_11 4.36894e-22	Pattern Name Homer Significance motif4.motif 1.65007e-08
E2f4	Pattern Name Modisco Significance metacluster_0/pattern_0 0.000432885	Pattern Name Homer Significance motif3.motif 0.0293467
Fev	Pattern Name Modisco Significance metacluster_0/pattern_1 0.00176234	Pattern Name Homer Significance motif1.motif 0.0380517
Tfeb	Pattern Name Modisco Significance metacluster_0/pattern_10 0.000670311	Pattern Name Homer Significance motif5.motif 0.041320499999999996
Ctcf	Pattern Name Modisco Significance metacluster_0/pattern_2 2.94746e-11	Pattern Name Homer Significance motif2.motif 3.97122e-06
Creb1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00118801 metacluster_0/pattern_10 0.0554049	Pattern Name Homer Significance motif5.motif 0.041320499999999996
Zbtb33	Pattern Name Modisco Significance metacluster_0/pattern_16 0.00184542	Pattern Name Homer Significance motif11.motif 0.000960955
Tfe3	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00209615	Pattern Name Homer Significance motif5.motif 0.04944930000000001
XP_911724.4	Pattern Name Modisco Significance metacluster_0/pattern_1 9.10706e-05	Pattern Name Homer Significance motif1.motif 0.000134068
Irf5	Pattern Name Modisco Significance metacluster_0/pattern_5 0.00780578	Pattern Name Homer Significance motif1.motif 0.0436905
Klf7	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00077981	Pattern Name Homer Significance motif3.motif 0.00234399
Elf2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000751722	Pattern Name Homer Significance motif1.motif 0.039393199999999996
Klf12	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0171137	Pattern Name Homer Significance motif3.motif 0.00516431
Nrf1	Pattern Name Modisco Significance metacluster_0/pattern_3 6.08274e-07	Pattern Name Homer Significance motif10.motif 0.0014662000000000002
Nfya	Pattern Name Modisco Significance metacluster_0/pattern_4 4.51032e-09	Pattern Name Homer Significance motif6.motif 1.07234e-05
Spi1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000378454 metacluster_0/pattern_8 0.00225679	Pattern Name Homer Significance motif1.motif 0.04951219999999999
Etv3	Pattern Name Modisco Significance metacluster_0/pattern_1 7.21609e-05	Pattern Name Homer Significance motif1.motif 0.000133385
Elk1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000160171	Pattern Name Homer Significance motif1.motif 0.000682175
Taf1	Pattern Name Modisco Significance metacluster_0/pattern_9 5.07182e-06	Pattern Name Homer Significance motif15.motif 0.00320896
Elk4	Pattern Name Modisco Significance metacluster_0/pattern_1 7.21609e-05	Pattern Name Homer Significance motif1.motif 0.00127643
Nfkb1	Pattern Name Modisco Significance metacluster_0/pattern_13 3.96681e-05	Pattern Name Homer Significance motif21.motif 0.011800299999999998
Elf4	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000285565	Pattern Name Homer Significance motif1.motif 0.00013345

Unique TF-MoDISco TFs: #79

TF Name	Modisco	Homer
Atf7	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00139511 metacluster_0/pattern_10 0.0197546	Absent
Egr3	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0467714	Absent
Creb5	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00104067	Absent
Klf15	Pattern Name Modisco Significance metacluster_0/pattern_7 0.026848400000000005	Absent
Junb	Pattern Name Modisco Significance metacluster_0/pattern_12 0.023171599999999997	Absent
Zfp740	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0442566	Absent
Egr2	Pattern Name Modisco Significance metacluster_0/pattern_0 0.041511900000000004 metacluster_0/pattern_7 0.0225899 metacluster_0/pattern_9 0.0411455	Absent
Jund	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00219763	Absent
Maf	Pattern Name Modisco Significance metacluster_0/pattern_12 0.0432555	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0100524	Absent
Rfx1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00848044 metacluster_0/pattern_9 0.00556396 metacluster_0/pattern_15 7.76775e-12	Absent
Mycn	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0554049	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00111152	Absent
Zbtb17	Pattern Name Modisco Significance metacluster_0/pattern_0 0.00391853 metacluster_0/pattern_7 0.00848044 metacluster_0/pattern_9 0.00754022	Absent
Rfx2	Pattern Name Modisco Significance metacluster_0/pattern_15 0.0214982	Absent
Mef2a	Pattern Name Modisco Significance metacluster_0/pattern_19 0.000328371	Absent
Hlf	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0197546	Absent
Irf8	Pattern Name Modisco Significance metacluster_0/pattern_1 0.000470306 metacluster_0/pattern_5 0.000215085 metacluster_0/pattern_8 4.27295e-10	Absent
Rfx7	Pattern Name Modisco Significance metacluster_0/pattern_15 0.000371945	Absent
Srebf2	Pattern Name Modisco Significance metacluster_0/pattern_10 0.00400905	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0190253	Absent
Stat2	Pattern Name Modisco Significance metacluster_0/pattern_5 0.000514189 metacluster_0/pattern_8 0.034005	Absent
Nfil3	Pattern Name Modisco Significance metacluster_0/pattern_6 0.042075	Absent
Maff	Pattern Name Modisco Significance metacluster_0/pattern_12 0.0432555	Absent
Mafk	Pattern Name Modisco Significance metacluster_0/pattern_12 0.018264700000000002	Absent
Rxrb	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0538548	Absent
Mafg	Pattern Name Modisco Significance metacluster_0/pattern_12 0.041411699999999996	Absent
Runx3	Pattern Name Modisco Significance metacluster_0/pattern_17 0.00435057	Absent
Atf3	Pattern Name Modisco Significance metacluster_0/pattern_6 0.03558119999999999 metacluster_0/pattern_12 0.00228995	Absent
Prdm1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.037631 metacluster_0/pattern_5 0.000581383 metacluster_0/pattern_8 0.0180229	Absent
Max	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0541187	Absent
Zfp281	Pattern Name Modisco Significance metacluster_0/pattern_0 0.019901	Absent
Rel	Pattern Name Modisco Significance metacluster_0/pattern_13 0.0170565	Absent
Jun	Pattern Name Modisco Significance metacluster_0/pattern_6 0.058944500000000004 metacluster_0/pattern_12 0.019272499999999998	Absent
Cbfb	Pattern Name Modisco Significance metacluster_0/pattern_17 0.00472558	Absent
Fosl2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0232021 metacluster_0/pattern_12 0.004529	Absent
Mafa	Pattern Name Modisco Significance metacluster_0/pattern_12 0.018204599999999998	Absent
Nanog	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0576222	Absent
Bach1	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00190739	Absent
Pou5f1	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0576222	Absent
Tef	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0538548	Absent
Mafb	Pattern Name Modisco Significance metacluster_0/pattern_6 0.011472 metacluster_0/pattern_12 0.0360266	Absent
Mxi1	Pattern Name Modisco Significance metacluster_0/pattern_9 0.0368902	Absent
Irf7	Pattern Name Modisco Significance metacluster_0/pattern_5 7.441669999999999e-06 metacluster_0/pattern_8 0.010657	Absent
Fos	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00175424	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_0/pattern_14 0.035832199999999995	Absent
Pou2f1	Pattern Name Modisco Significance metacluster_0/pattern_14 0.0576222	Absent
Rfx6	Pattern Name Modisco Significance metacluster_0/pattern_15 0.000673086	Absent
Nfe2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.000363847	Absent
Runx1	Pattern Name Modisco Significance metacluster_0/pattern_17 0.00232278	Absent
Maz	Pattern Name Modisco Significance metacluster_0/pattern_7 0.023165099999999997 metacluster_0/pattern_9 0.0175014	Absent
Arnt	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0380787	Absent
Irf2	Pattern Name Modisco Significance metacluster_0/pattern_1 0.03546969999999999 metacluster_0/pattern_5 0.00121065 metacluster_0/pattern_8 0.00106228	Absent
Wt1	Pattern Name Modisco Significance metacluster_0/pattern_7 0.00848044 metacluster_0/pattern_9 0.0129245	Absent
Irf6	Pattern Name Modisco Significance metacluster_0/pattern_5 0.0396359	Absent
Zfx	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0230767 metacluster_0/pattern_3 0.047708 metacluster_0/pattern_7 0.00114501 metacluster_0/pattern_9 0.00445796	Absent
Fosb	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00190739	Absent
Rfx4	Pattern Name Modisco Significance metacluster_0/pattern_15 2.02819e-05	Absent
Sp5	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0195822 metacluster_0/pattern_7 0.0458952 metacluster_0/pattern_9 0.0441205	Absent
Fosl1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.025069499999999998 metacluster_0/pattern_12 0.011428	Absent
Jdp2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00118801 metacluster_0/pattern_10 0.0541187 metacluster_0/pattern_12 3.27737e-05	Absent
Mlxip	Pattern Name Modisco Significance metacluster_0/pattern_10 0.051255600000000005	Absent
Mef2c	Pattern Name Modisco Significance metacluster_0/pattern_19 2.42707e-06	Absent
Dbp	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0330519	Absent
Myc	Pattern Name Modisco Significance metacluster_0/pattern_10 0.0173672	Absent
Atf1	Pattern Name Modisco Significance metacluster_0/pattern_6 0.0111005 metacluster_0/pattern_10 0.018880200000000003	Absent
Bach2	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00139447	Absent
Stat1	Pattern Name Modisco Significance metacluster_0/pattern_5 0.00121065	Absent
Batf	Pattern Name Modisco Significance metacluster_0/pattern_12 0.00219763	Absent
Mef2d	Pattern Name Modisco Significance metacluster_0/pattern_19 8.37235e-08	Absent
Atf2	Pattern Name Modisco Significance metacluster_0/pattern_6 0.00363363 metacluster_0/pattern_10 0.0542691	Absent
Runx2	Pattern Name Modisco Significance metacluster_0/pattern_17 0.00612792	Absent
Irf9	Pattern Name Modisco Significance metacluster_0/pattern_5 0.000255684	Absent
Rfx3	Pattern Name Modisco Significance metacluster_0/pattern_15 0.000299138	Absent
Irf3	Pattern Name Modisco Significance metacluster_0/pattern_1 0.056470299999999994 metacluster_0/pattern_5 0.0370205 metacluster_0/pattern_8 0.00106228	Absent
Zscan10	Pattern Name Modisco Significance metacluster_0/pattern_8 0.0213992	Absent
E2f1	Pattern Name Modisco Significance metacluster_0/pattern_0 0.0103587	Absent
Crem	Pattern Name Modisco Significance metacluster_0/pattern_6 0.012820400000000001	Absent
Irf1	Pattern Name Modisco Significance metacluster_0/pattern_1 0.056470299999999994 metacluster_0/pattern_5 3.47641e-08 metacluster_0/pattern_8 0.00143452	Absent

Unique Homer TFs: #4

TF Name	Modisco	Homer
Zic3	Absent	Pattern Name Homer Significance motif2.motif 0.029616800000000002
Hic1	Absent	Pattern Name Homer Significance motif21.motif 0.044312199999999996
Epas1	Absent	Pattern Name Homer Significance motif5.motif 0.059249800000000005
Zic2	Absent	Pattern Name Homer Significance motif2.motif 0.029616800000000002