# Parameters
data_name = "aB;CD180;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_74-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_74-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:56:56,082 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	aBCD180
Cell Group	B cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	53221	34951	13.0333	55180944	4884833	0.0886	5014483	0.0909	17506509	0.3174

Modelling Metadata

Metric	Value
auPRC	0.6846
Calibrated Recall at 50% FDR	0.176
Number of Positive Examples in Test Data	44504
Number of Negative Examples in Test Data	8026347
Imbalance Ratio in Test Data	0.0055
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #20

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 5858 SequenceContrib ScoresHyp_Contrib Scores	Spi1, Spib, Etv6, Ets1, Etv2, Etv4, Irf8, Irf4, Spic, Erg, Fli1, Elk1, Gabpa, Etv3, XP_911724.4, Elf1, Elf4, Elk4, Ehf, Elf3, Elk3, Elf2, Etv1, Etv5, Elf5, Fev, Irf3, Prdm1, Irf2, Spdef, Irf1
metacluster_1/pattern_1 # seqlets: 4561 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp3, Klf3, Sp1, Sp4, Zfx, Klf6, Klf1, Zbtb17, Egr1, Wt1, Klf5, Klf15, Klf4, Klf7, Usf2, Zfp281, E2f4, Klf8, Klf12, Sp5, Maz, Egr2, Mxi1, Ctcfl, Tfap2c, Nr1h4, Egr3, E2f1, Nhlh1, Rfx1, Sall4
metacluster_1/pattern_2 # seqlets: 3611 SequenceContrib ScoresHyp_Contrib Scores	Ctcf
metacluster_1/pattern_3 # seqlets: 1687 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Pbx3, Foxi1
metacluster_1/pattern_4 # seqlets: 1581 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_5 # seqlets: 1104 SequenceContrib ScoresHyp_Contrib Scores	Irf7, Stat2, Stat1, Irf9, Irf5, Irf6
metacluster_1/pattern_6 # seqlets: 1095 SequenceContrib ScoresHyp_Contrib Scores	Yy1, Taf1, Zfp42
metacluster_1/pattern_7 # seqlets: 760 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_8 # seqlets: 729 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Atf2, Atf7, Jdp2, Atf1, Crem, Creb5, Atf3, Usf1, Fosl2, Hlf, Jun, Nfil3
metacluster_1/pattern_9 # seqlets: 489 SequenceContrib ScoresHyp_Contrib Scores	Nfkb2, Nfkb1, Rela, Relb, Rel
metacluster_1/pattern_10 # seqlets: 462 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2, Pou2f1, Pou5f1, Nanog
metacluster_1/pattern_11 # seqlets: 441 SequenceContrib ScoresHyp_Contrib Scores	Tfec, Tfeb, Mitf, Arntl, Srebf1, Tfe3, Bhlhe40, Mlx, Clock, Arnt, Npas2, Srebf2, Tcfl5, Creb3l2, Bhlhe41, Dbp, Xbp1, Mlxip
metacluster_1/pattern_12 # seqlets: 377 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6, Sox2
metacluster_1/pattern_13 # seqlets: 349 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Runx3, Cbfb, Gfi1b
metacluster_1/pattern_14 # seqlets: 275 SequenceContrib ScoresHyp_Contrib Scores	Jund, Fos, Fosl1, Junb, Fosb, Batf, Bach2, Bach1, Nfe2, Nfe2l2, Mafa
metacluster_1/pattern_15 # seqlets: 192 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_16 # seqlets: 159 SequenceContrib ScoresHyp_Contrib Scores	Mef2d, Mef2c, Mef2a
metacluster_1/pattern_17 # seqlets: 121 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_18 # seqlets: 92 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_19 # seqlets: 42 SequenceContrib ScoresHyp_Contrib Scores	Nfia, Nfib, Zfp322a

Click here for Motifs by TF-MoDISco: #151

TF Name	Pattern(s)
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000313337
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 2.0565e-05 metacluster_1/pattern_5 0.0043754
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000999498
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00023626400000000003
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 9.2045e-05
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000812731
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 9.31667e-05 metacluster_1/pattern_5 1.19648e-05
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 9.99925e-05 metacluster_1/pattern_5 0.00151798
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00033658099999999997
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000259922
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00182933 metacluster_1/pattern_1 0.018456599999999997
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000689055
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00828806
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000259922
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000259922
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000313337
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000376916
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00068904
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00151502
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00369784
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000689055
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.012806999999999999
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000999498
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00073609
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0110781
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00587304
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00591067 metacluster_1/pattern_5 0.04703
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00591367 metacluster_1/pattern_5 0.000489214
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00715218 metacluster_1/pattern_5 0.00321344
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00828806
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0114152 metacluster_1/pattern_5 3.8420900000000005e-07
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 7.48337e-17 metacluster_1/pattern_6 5.42272e-05 metacluster_1/pattern_17 0.00514551
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 9.00958e-12 metacluster_1/pattern_6 0.00052419 metacluster_1/pattern_17 0.00901676
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 1.0598699999999998e-09 metacluster_1/pattern_6 0.0362043
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0006364540000000001 metacluster_1/pattern_6 0.000226658 metacluster_1/pattern_17 0.0101177
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00147326
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00143491 metacluster_1/pattern_4 0.0300019 metacluster_1/pattern_6 0.00186447 metacluster_1/pattern_8 0.0100222 metacluster_1/pattern_17 0.00814194
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 1.8858700000000003e-06
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.026960900000000003
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00011157 metacluster_1/pattern_6 0.00717166
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0552155
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000345647 metacluster_1/pattern_6 0.0275969
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000571727
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000827618
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00143491
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00119132
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012143 metacluster_1/pattern_6 0.056228499999999994 metacluster_1/pattern_8 1.402e-05 metacluster_1/pattern_11 0.00265696
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0020755
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00147326
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00166096
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00166096
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0025434999999999998
Maz	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00392689
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.052879300000000004 metacluster_1/pattern_6 0.0467235
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0113073 metacluster_1/pattern_6 0.0450285
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_1 0.016503900000000002 metacluster_1/pattern_2 2.9005999999999997e-09
Tfap2c	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0213495
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0264125
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.038423900000000004
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0404779
Nhlh1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0409208
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.042192400000000005 metacluster_1/pattern_6 0.006327 metacluster_1/pattern_12 1.94925e-10
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0487091
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_2 4.01189e-12
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 8.31518e-15
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 7.98997e-11
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 1.15093e-09
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 2.4914700000000002e-06
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 9.82599e-06
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 2.92643e-07
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00016773599999999998
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000489214
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000826319
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00111071
Irf5	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0112648
Irf6	Pattern Name Modisco Significance metacluster_1/pattern_5 0.04703
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_6 2.5033000000000002e-06
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_6 2.5033000000000002e-06
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00717166
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_7 2.26307e-21
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_7 3.4632699999999996e-21
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_7 7.32785e-14
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00340987
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00391037
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00144641
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00153828 metacluster_1/pattern_14 0.00040809099999999997
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0243243 metacluster_1/pattern_11 0.0154535
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.017071
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0014835999999999998
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0403429 metacluster_1/pattern_14 7.50481e-05
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00841071 metacluster_1/pattern_11 0.00356277
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.020256299999999998 metacluster_1/pattern_14 0.000106108
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.03759559999999999 metacluster_1/pattern_11 0.0388385
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0436778 metacluster_1/pattern_14 0.0447264
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.057335199999999996
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_9 4.53349e-05
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00018047400000000002
Rela	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000993982
Relb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00128093
Rel	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0314835
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00207843
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0132981
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.047344300000000006 metacluster_1/pattern_12 0.059377099999999995
Nanog	Pattern Name Modisco Significance metacluster_1/pattern_10 0.05535369999999999
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00232069
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00105251
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00175726
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00489792
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00218662
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00246947
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00650207
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0207453
Clock	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0402049
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0346977
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00232069
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00312015
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00431453
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.050497900000000005
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_11 0.015091899999999998
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0373019
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0424205
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_11 0.047719199999999996
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000544795
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.018603799999999997
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_12 7.22053e-05
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000310882
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0009571289999999999
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.059377099999999995
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00120259
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_13 4.54314e-05
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00037276400000000004
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00038144300000000003
Gfi1b	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0403636
Jund	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0057748
Fos	Pattern Name Modisco Significance metacluster_1/pattern_14 1.2848800000000001e-05
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.047151599999999995
Junb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.035517
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_14 4.16853e-05
Batf	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0290969
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00479571
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00865345
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.010271899999999999
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0123448
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_14 0.05626799999999999
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_16 9.83272e-09
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_16 6.10687e-08
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000147419
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_17 1.3198e-05
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_19 1.06506e-05
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00207327
Zfp322a	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0241087

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #78

TF Name	Modisco	Homer
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00369784	Pattern Name Homer Significance motif3.motif 0.035432
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0132981	Pattern Name Homer Significance motif14.motif 0.013282200000000001
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.052879300000000004 metacluster_1/pattern_6 0.0467235	Pattern Name Homer Significance motif1.motif 0.0493223
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000313337	Pattern Name Homer Significance motif3.motif 0.03242009999999999
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0114152 metacluster_1/pattern_5 3.8420900000000005e-07	Pattern Name Homer Significance motif6.motif 0.000591499
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00018047400000000002	Pattern Name Homer Significance motif16.motif 8.19549e-05
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000689055	Pattern Name Homer Significance motif3.motif 0.000861068
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00147326	Pattern Name Homer Significance motif1.motif 0.0249102 motif15.motif 0.042546600000000004
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000259922	Pattern Name Homer Significance motif3.motif 0.000243999
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00111071	Pattern Name Homer Significance motif6.motif 0.00223433
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00166096	Pattern Name Homer Significance motif1.motif 0.00149268 motif15.motif 0.042546600000000004
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00591367 metacluster_1/pattern_5 0.000489214	Pattern Name Homer Significance motif6.motif 0.00602282
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_6 2.5033000000000002e-06	Pattern Name Homer Significance motif13.motif 0.00724627
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 7.98997e-11	Pattern Name Homer Significance motif4.motif 2.4430299999999997e-08
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_6 2.5033000000000002e-06	Pattern Name Homer Significance motif13.motif 2.9374e-05
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 9.2045e-05	Pattern Name Homer Significance motif3.motif 0.00286131
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000259922	Pattern Name Homer Significance motif3.motif 0.000129629
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0110781	Pattern Name Homer Significance motif3.motif 0.00442487
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0552155	Pattern Name Homer Significance motif1.motif 0.0199832
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00166096	Pattern Name Homer Significance motif1.motif 0.0228049 motif15.motif 0.0414079
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00151502	Pattern Name Homer Significance motif3.motif 0.029619799999999998
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000313337	Pattern Name Homer Significance motif3.motif 0.000861068
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 1.15093e-09	Pattern Name Homer Significance motif4.motif 1.47107e-08
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_7 7.32785e-14	Pattern Name Homer Significance motif5.motif 0.00010922
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_17 1.3198e-05	Pattern Name Homer Significance motif12.motif 0.00033897800000000003
Relb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00128093	Pattern Name Homer Significance motif16.motif 0.00047268900000000004
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00715218 metacluster_1/pattern_5 0.00321344	Pattern Name Homer Significance motif6.motif 0.00661721
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00591067 metacluster_1/pattern_5 0.04703	Pattern Name Homer Significance motif6.motif 0.059662
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_1 0.016503900000000002 metacluster_1/pattern_2 2.9005999999999997e-09	Pattern Name Homer Significance motif2.motif 0.000631019 motif10.motif 0.00755486
Rela	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000993982	Pattern Name Homer Significance motif16.motif 0.000558578
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00023626400000000003	Pattern Name Homer Significance motif3.motif 0.00014231200000000002
Rel	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0314835	Pattern Name Homer Significance motif16.motif 0.033355800000000005
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00119132	Pattern Name Homer Significance motif1.motif 0.000832328
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 9.31667e-05 metacluster_1/pattern_5 1.19648e-05	Pattern Name Homer Significance motif6.motif 2.35479e-05
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 9.00958e-12 metacluster_1/pattern_6 0.00052419 metacluster_1/pattern_17 0.00901676	Pattern Name Homer Significance motif1.motif 2.997e-05
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 9.82599e-06	Pattern Name Homer Significance motif4.motif 9.86528e-07
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 1.8858700000000003e-06	Pattern Name Homer Significance motif1.motif 0.000647122
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_2 4.01189e-12	Pattern Name Homer Significance motif2.motif 0.00033964300000000004 motif10.motif 0.0052853
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 1.0598699999999998e-09 metacluster_1/pattern_6 0.0362043	Pattern Name Homer Significance motif1.motif 5.0986400000000004e-05
Irf6	Pattern Name Modisco Significance metacluster_1/pattern_5 0.04703	Pattern Name Homer Significance motif3.motif 0.0485718
Irf5	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0112648	Pattern Name Homer Significance motif6.motif 0.0241323
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 8.31518e-15	Pattern Name Homer Significance motif4.motif 1.31641e-10
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_13 4.54314e-05	Pattern Name Homer Significance motif11.motif 0.044437199999999996
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00016773599999999998	Pattern Name Homer Significance motif6.motif 0.0374524
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00011157 metacluster_1/pattern_6 0.00717166	Pattern Name Homer Significance motif1.motif 0.0285558
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_7 2.26307e-21	Pattern Name Homer Significance motif5.motif 1.53047e-05
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0006364540000000001 metacluster_1/pattern_6 0.000226658 metacluster_1/pattern_17 0.0101177	Pattern Name Homer Significance motif1.motif 0.00877971
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.012806999999999999	Pattern Name Homer Significance motif3.motif 0.00379484
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 2.4914700000000002e-06	Pattern Name Homer Significance motif4.motif 2.3272800000000002e-05
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00068904	Pattern Name Homer Significance motif3.motif 4.3987200000000005e-05
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000999498	Pattern Name Homer Significance motif3.motif 4.3987200000000005e-05
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000489214	Pattern Name Homer Significance motif6.motif 0.00990708
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.026960900000000003	Pattern Name Homer Significance motif1.motif 0.0512989 motif15.motif 0.0408554
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00828806	Pattern Name Homer Significance motif3.motif 0.00306192 motif6.motif 0.059662
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00182933 metacluster_1/pattern_1 0.018456599999999997	Pattern Name Homer Significance motif3.motif 0.000585094
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00587304	Pattern Name Homer Significance motif3.motif 0.00442487
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 7.48337e-17 metacluster_1/pattern_6 5.42272e-05 metacluster_1/pattern_17 0.00514551	Pattern Name Homer Significance motif1.motif 1.3331e-05
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000689055	Pattern Name Homer Significance motif3.motif 0.000503021
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000812731	Pattern Name Homer Significance motif3.motif 0.00195947
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00717166	Pattern Name Homer Significance motif13.motif 0.00724627
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000999498	Pattern Name Homer Significance motif3.motif 0.00569813
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_9 4.53349e-05	Pattern Name Homer Significance motif16.motif 0.000218152
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000376916	Pattern Name Homer Significance motif3.motif 0.00116622
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 9.99925e-05 metacluster_1/pattern_5 0.00151798	Pattern Name Homer Significance motif6.motif 0.00301818
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000827618	Pattern Name Homer Significance motif1.motif 0.053354099999999995
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00143491 metacluster_1/pattern_4 0.0300019 metacluster_1/pattern_6 0.00186447 metacluster_1/pattern_8 0.0100222 metacluster_1/pattern_17 0.00814194	Pattern Name Homer Significance motif1.motif 0.0285558
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00143491	Pattern Name Homer Significance motif1.motif 0.000731506 motif15.motif 0.050230199999999996
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00828806	Pattern Name Homer Significance motif3.motif 0.0422293
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_7 3.4632699999999996e-21	Pattern Name Homer Significance motif5.motif 1.0638599999999998e-05
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00073609	Pattern Name Homer Significance motif3.motif 0.00010349899999999999
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 2.92643e-07	Pattern Name Homer Significance motif7.motif 0.00134307
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000571727	Pattern Name Homer Significance motif1.motif 0.0228049
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00147326	Pattern Name Homer Significance motif1.motif 0.0013591
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000259922	Pattern Name Homer Significance motif3.motif 0.000198622
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 2.0565e-05 metacluster_1/pattern_5 0.0043754	Pattern Name Homer Significance motif3.motif 0.035432 motif6.motif 0.000698462
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.000826319	Pattern Name Homer Significance motif6.motif 0.037967400000000005
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00033658099999999997	Pattern Name Homer Significance motif3.motif 0.0139345
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00207843	Pattern Name Homer Significance motif14.motif 0.013282200000000001

Unique TF-MoDISco TFs: #73

TF Name	Modisco	Homer
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.050497900000000005	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0403429 metacluster_1/pattern_14 7.50481e-05	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0123448	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00841071 metacluster_1/pattern_11 0.00356277	Absent
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00038144300000000003	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00144641	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0014835999999999998	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0207453	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012143 metacluster_1/pattern_6 0.056228499999999994 metacluster_1/pattern_8 1.402e-05 metacluster_1/pattern_11 0.00265696	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00105251	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00175726	Absent
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00120259	Absent
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_19 1.06506e-05	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00392689	Absent
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00340987	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.057335199999999996	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00431453	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0009571289999999999	Absent
Mef2c	Pattern Name Modisco Significance metacluster_1/pattern_16 6.10687e-08	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00232069	Absent
Gfi1b	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0403636	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.010271899999999999	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_14 0.05626799999999999	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0057748	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.035517	Absent
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0264125	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00218662	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.020256299999999998 metacluster_1/pattern_14 0.000106108	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0290969	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.047151599999999995	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00232069	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_14 1.2848800000000001e-05	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.042192400000000005 metacluster_1/pattern_6 0.006327 metacluster_1/pattern_12 1.94925e-10	Absent
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00207327	Absent
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00037276400000000004	Absent
Sox2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.059377099999999995	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00246947	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_14 4.16853e-05	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0025434999999999998	Absent
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0487091	Absent
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_11 0.047719199999999996	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.018603799999999997	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00865345	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00489792	Absent
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00153828 metacluster_1/pattern_14 0.00040809099999999997	Absent
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0243243 metacluster_1/pattern_11 0.0154535	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000544795	Absent
Zfp322a	Pattern Name Modisco Significance metacluster_1/pattern_19 0.0241087	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_11 0.015091899999999998	Absent
Mef2d	Pattern Name Modisco Significance metacluster_1/pattern_16 9.83272e-09	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0020755	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.03759559999999999 metacluster_1/pattern_11 0.0388385	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0424205	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0373019	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0346977	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00650207	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.038423900000000004	Absent
Tfap2c	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0213495	Absent
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0404779	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_12 7.22053e-05	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00391037	Absent
Nanog	Pattern Name Modisco Significance metacluster_1/pattern_10 0.05535369999999999	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00312015	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00479571	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0436778 metacluster_1/pattern_14 0.0447264	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000310882	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000345647 metacluster_1/pattern_6 0.0275969	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.017071	Absent
Pou5f1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.047344300000000006 metacluster_1/pattern_12 0.059377099999999995	Absent
Mef2a	Pattern Name Modisco Significance metacluster_1/pattern_16 0.000147419	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0402049	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0113073 metacluster_1/pattern_6 0.0450285	Absent
Nhlh1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0409208	Absent

Unique Homer TFs: #0

TF Name	Modisco	Homer