# Parameters
data_name = "Tfh;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_24-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_24-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:45:16,620 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	Tfh (CD4+CD44+CXCR5+PD1+CD25-) WT
Cell Group	T cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	95446	71809	11.5472	48537970	8872593	0.1829	7063388	0.1456	15961408	0.329

Modelling Metadata

Metric	Value
auPRC	0.6169
Calibrated Recall at 50% FDR	0.201
Number of Positive Examples in Test Data	85301
Number of Negative Examples in Test Data	7985550
Imbalance Ratio in Test Data	0.0106
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #20

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 6244 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 4461 SequenceContrib ScoresHyp_Contrib Scores	Ets1, Erg, Elk1, Gabpa, Fli1, Elk4, Etv2, Etv4, Etv5, Elk3, Elf2, Spi1, Etv6, Elf1, Ehf, Spib, Fev, Etv1, Etv3, XP_911724.4, Elf3, Elf4, Elf5, Irf8, Irf4, Ets2, Stat4, Spdef, Spic
metacluster_1/pattern_2 # seqlets: 4282 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Sp2, Sp3, Klf3, Sp1, E2f4, Klf6, Klf7, Klf4, Egr1, Klf8, Klf12, Klf1, Zbtb17, Egr2, E2f1, Sp5, Zfp281, Klf5, Zfx, Zfp740, Egr3
metacluster_1/pattern_3 # seqlets: 1502 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_4 # seqlets: 1384 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_5 # seqlets: 1022 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Jdp2, Atf2, Atf7, Creb5, Atf3, Crem, Atf1, Mafb, Fosl2, Fosl1, Nfil3, Jun, Tef, Hlf, Dbp, Creb3l2
metacluster_1/pattern_6 # seqlets: 844 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Prdm1, Irf7, Stat1, Irf3, Irf9, Batf3, Stat2
metacluster_1/pattern_7 # seqlets: 814 SequenceContrib ScoresHyp_Contrib Scores	Rfx1, Rfx2, Rfx3, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_8 # seqlets: 759 SequenceContrib ScoresHyp_Contrib Scores	Thap11, Zfp143, Tbx2
metacluster_1/pattern_9 # seqlets: 660 SequenceContrib ScoresHyp_Contrib Scores	Hes1, Hes7
metacluster_1/pattern_10 # seqlets: 645 SequenceContrib ScoresHyp_Contrib Scores	Jund, Batf, Fos, Fosb, Junb, Bach2, Nfe2, Mafa, Bach1, Nfe2l2, Mafk, Mafg, Maf, Maff
metacluster_1/pattern_11 # seqlets: 638 SequenceContrib ScoresHyp_Contrib Scores	Yy1, Taf1, Zfp42
metacluster_1/pattern_12 # seqlets: 560 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Usf2, Tfe3, Tfeb, Arntl, Tfec, Mitf, Clock, Bhlhe40, Arnt, Srebf1, Mlx, Npas2, Srebf2, Tcfl5, Mycn, Max, Myc, Bhlhe41, Xbp1
metacluster_1/pattern_13 # seqlets: 518 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Cbfb, Runx3
metacluster_1/pattern_14 # seqlets: 395 SequenceContrib ScoresHyp_Contrib Scores	Nfkb2, Nfkb1, Rela, Relb, Rel
metacluster_1/pattern_15 # seqlets: 227 SequenceContrib ScoresHyp_Contrib Scores	Nfatc1
metacluster_1/pattern_16 # seqlets: 167 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2, Pou2f1
metacluster_1/pattern_17 # seqlets: 88 SequenceContrib ScoresHyp_Contrib Scores	Maz, Wt1, Klf15
metacluster_1/pattern_18 # seqlets: 83 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_19 # seqlets: 54 SequenceContrib ScoresHyp_Contrib Scores	Nfia, Nfib

Click here for Motifs by TF-MoDISco: #151

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 2.44409e-16
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 8.18313e-08
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00200728
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967 metacluster_1/pattern_17 0.0324485
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967 metacluster_1/pattern_17 0.0541832
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00266671
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 8.46907e-05
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967 metacluster_1/pattern_17 0.0282214
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0007490110000000001 metacluster_1/pattern_17 0.026193
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00200728 metacluster_1/pattern_17 0.0541832
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0135403
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.054662199999999994
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0017937
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00111098
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0158527
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967 metacluster_1/pattern_6 0.0055985
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00200728 metacluster_1/pattern_17 0.029920699999999998
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0021972
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0021972
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0289007
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00853147
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0379889
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0184028 metacluster_1/pattern_6 2.6482800000000003e-05
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.021941400000000003 metacluster_1/pattern_6 0.047264099999999996
Ets2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0289007
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0289007
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0299308
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.030363400000000002
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00284814 metacluster_1/pattern_9 0.00835497 metacluster_1/pattern_17 0.039811900000000004
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 7.76425e-06 metacluster_1/pattern_3 0.052223 metacluster_1/pattern_9 0.00104247 metacluster_1/pattern_11 0.00021621799999999998 metacluster_1/pattern_17 3.3299499999999995e-05 metacluster_1/pattern_18 0.00377777
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 7.76425e-06 metacluster_1/pattern_9 0.00114709 metacluster_1/pattern_11 0.00255211 metacluster_1/pattern_17 0.000638398 metacluster_1/pattern_18 0.00753187
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 3.6430700000000003e-05 metacluster_1/pattern_9 0.00104247 metacluster_1/pattern_17 0.00447151
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00122435 metacluster_1/pattern_9 0.0049817 metacluster_1/pattern_11 0.000568409 metacluster_1/pattern_17 0.00227121
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0008098 metacluster_1/pattern_9 0.00904012 metacluster_1/pattern_17 0.000638398
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00122435 metacluster_1/pattern_9 0.00825571 metacluster_1/pattern_17 0.0123445
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00122435 metacluster_1/pattern_9 0.00104247
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0203713 metacluster_1/pattern_9 0.00904012
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.043682099999999995 metacluster_1/pattern_9 0.0289086 metacluster_1/pattern_17 0.027294299999999997
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00185165 metacluster_1/pattern_9 0.00114709
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.025359 metacluster_1/pattern_9 0.00144874
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0247943 metacluster_1/pattern_9 0.00784686
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00426022 metacluster_1/pattern_11 0.0157893 metacluster_1/pattern_17 0.00545706
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0414046
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0158489 metacluster_1/pattern_17 0.027294299999999997
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0162386 metacluster_1/pattern_17 0.00166312
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.025359 metacluster_1/pattern_9 0.00921384 metacluster_1/pattern_17 0.0446385
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0247943 metacluster_1/pattern_17 0.0286481
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.025359 metacluster_1/pattern_3 0.0314946 metacluster_1/pattern_11 0.00389249 metacluster_1/pattern_17 0.026193 metacluster_1/pattern_18 0.00377777
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.042894699999999994
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.042894699999999994
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_3 7.764289999999999e-07
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 3.43819e-14
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 4.2758100000000005e-13
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 1.43939e-11
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.19389e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 3.3706300000000004e-06
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00116907 metacluster_1/pattern_12 0.0285983
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00012230299999999998 metacluster_1/pattern_10 1.9553e-06 metacluster_1/pattern_12 0.021475599999999997
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00020470200000000002
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_5 7.94916e-05 metacluster_1/pattern_12 0.0521972
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_5 5.67591e-05
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00530069 metacluster_1/pattern_10 0.0007590539999999999
Crem	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00139815
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0162153 metacluster_1/pattern_12 0.027780400000000004
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00336826 metacluster_1/pattern_10 0.027179000000000002
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00445871 metacluster_1/pattern_10 0.000176684
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00618172 metacluster_1/pattern_10 0.00585491
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00828448
Jun	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0362388 metacluster_1/pattern_10 0.046643800000000006
Tef	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0162153
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0324902 metacluster_1/pattern_12 0.021475599999999997
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_5 0.050301599999999995
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.050301599999999995 metacluster_1/pattern_12 0.028758699999999998
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_6 2.17087e-15
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0017457999999999998
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_6 8.572440000000001e-05
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00016342
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00016979700000000001
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0017457999999999998
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0017457999999999998
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00205562
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00321668
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_7 3.48932e-07 metacluster_1/pattern_11 0.0352666
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_7 5.380640000000001e-08
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0128226
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_7 4.904e-05
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00567274
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_7 0.012552200000000001
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_8 6.46319e-22
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_8 9.34908e-22
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_8 1.2995e-13
Hes1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0430006
Hes7	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0430006
Jund	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00230321
Batf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0166988
Fos	Pattern Name Modisco Significance metacluster_1/pattern_10 5.33262e-05
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00032177299999999997
Junb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00998859
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00642711
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00893317
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00912087
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00957012
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.010628299999999999
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_10 0.013455799999999999
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_10 0.027179000000000002
Maf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.030817700000000003
Maff	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0407906
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_11 3.3599599999999998e-06
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_11 4.41481e-06
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0157893
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0180655
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00837649 metacluster_1/pattern_17 0.0390304
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0010714000000000001
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000300494
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00756314
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00110355
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000736985
Clock	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0185138
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_12 0.014296000000000001
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0485109
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0356346
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00908027
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00255052
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00700271
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0144048
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0180655
Max	Pattern Name Modisco Significance metacluster_1/pattern_12 0.021475599999999997
Myc	Pattern Name Modisco Significance metacluster_1/pattern_12 0.028758699999999998
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0270057
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.053748500000000005
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00545241
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00326714
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00353378
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00545241
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_14 2.69747e-06
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_14 8.100119999999999e-05
Rela	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000564808
Relb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000530716
Rel	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0279224
Nfatc1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0219297
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00455992
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.021396000000000002
Maz	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00166312
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00227121
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0137565
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_18 1.59597e-06
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00553457
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_19 0.021386900000000004

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #76

TF Name	Modisco	Homer
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0135403	Pattern Name Homer Significance motif3.motif 0.0334586
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00200728 metacluster_1/pattern_17 0.0541832	Pattern Name Homer Significance motif3.motif 0.000376095
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0158489 metacluster_1/pattern_17 0.027294299999999997	Pattern Name Homer Significance motif2.motif 0.00456272
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_8 9.34908e-22	Pattern Name Homer Significance motif5.motif 1.0224700000000002e-06
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00530069 metacluster_1/pattern_10 0.0007590539999999999	Pattern Name Homer Significance motif6.motif 0.047319099999999996
Relb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000530716	Pattern Name Homer Significance motif18.motif 0.0145077
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_5 7.94916e-05 metacluster_1/pattern_12 0.0521972	Pattern Name Homer Significance motif6.motif 0.0105059
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0017457999999999998	Pattern Name Homer Significance motif20.motif 0.0232606
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 2.44409e-16	Pattern Name Homer Significance motif1.motif 0.000473677
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0247943 metacluster_1/pattern_17 0.0286481	Pattern Name Homer Significance motif2.motif 0.00588086
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00266671	Pattern Name Homer Significance motif3.motif 0.00034050300000000003
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_6 2.17087e-15	Pattern Name Homer Significance motif20.motif 0.0241909
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0203713 metacluster_1/pattern_9 0.00904012	Pattern Name Homer Significance motif2.motif 0.014273
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 8.46907e-05	Pattern Name Homer Significance motif3.motif 0.00209395
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967	Pattern Name Homer Significance motif3.motif 0.00869049
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_6 8.572440000000001e-05	Pattern Name Homer Significance motif20.motif 0.022565900000000003
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967	Pattern Name Homer Significance motif3.motif 0.00159988
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00116907 metacluster_1/pattern_12 0.0285983	Pattern Name Homer Significance motif6.motif 0.047319099999999996
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00445871 metacluster_1/pattern_10 0.000176684	Pattern Name Homer Significance motif6.motif 0.0412636
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.043682099999999995 metacluster_1/pattern_9 0.0289086 metacluster_1/pattern_17 0.027294299999999997	Pattern Name Homer Significance motif2.motif 0.00588086
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00122435 metacluster_1/pattern_9 0.00825571 metacluster_1/pattern_17 0.0123445	Pattern Name Homer Significance motif2.motif 0.00207336
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 7.76425e-06 metacluster_1/pattern_3 0.052223 metacluster_1/pattern_9 0.00104247 metacluster_1/pattern_11 0.00021621799999999998 metacluster_1/pattern_17 3.3299499999999995e-05 metacluster_1/pattern_18 0.00377777	Pattern Name Homer Significance motif2.motif 0.00226368
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00012230299999999998 metacluster_1/pattern_10 1.9553e-06 metacluster_1/pattern_12 0.021475599999999997	Pattern Name Homer Significance motif6.motif 0.0412636
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967 metacluster_1/pattern_6 0.0055985	Pattern Name Homer Significance motif20.motif 0.0232606
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.19389e-06	Pattern Name Homer Significance motif7.motif 8.83573e-06
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_3 7.764289999999999e-07	Pattern Name Homer Significance motif10.motif 3.64576e-07
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 1.43939e-11	Pattern Name Homer Significance motif7.motif 1.26964e-06
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_17 0.0137565	Pattern Name Homer Significance motif2.motif 0.00588086
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00122435 metacluster_1/pattern_9 0.0049817 metacluster_1/pattern_11 0.000568409 metacluster_1/pattern_17 0.00227121	Pattern Name Homer Significance motif2.motif 0.00843207
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0289007	Pattern Name Homer Significance motif3.motif 0.0350235
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_11 3.3599599999999998e-06	Pattern Name Homer Significance motif13.motif 0.015128200000000001
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0414046	Pattern Name Homer Significance motif2.motif 0.0457586
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 8.18313e-08	Pattern Name Homer Significance motif1.motif 0.0008640119999999999
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.030363400000000002	Pattern Name Homer Significance motif3.motif 0.0164261
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00016342	Pattern Name Homer Significance motif20.motif 0.0490115
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00426022 metacluster_1/pattern_11 0.0157893 metacluster_1/pattern_17 0.00545706	Pattern Name Homer Significance motif2.motif 0.0107851
Rela	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000564808	Pattern Name Homer Significance motif18.motif 0.0145077
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 3.6430700000000003e-05 metacluster_1/pattern_9 0.00104247 metacluster_1/pattern_17 0.00447151	Pattern Name Homer Significance motif2.motif 0.00032108099999999997
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0247943 metacluster_1/pattern_9 0.00784686	Pattern Name Homer Significance motif2.motif 0.046199300000000006
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00200728 metacluster_1/pattern_17 0.029920699999999998	Pattern Name Homer Significance motif3.motif 0.000110163
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0008098 metacluster_1/pattern_9 0.00904012 metacluster_1/pattern_17 0.000638398	Pattern Name Homer Significance motif2.motif 0.00110777
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 3.43819e-14	Pattern Name Homer Significance motif7.motif 4.88037e-10
Crem	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00139815	Pattern Name Homer Significance motif6.motif 0.014537600000000001
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0184028 metacluster_1/pattern_6 2.6482800000000003e-05	Pattern Name Homer Significance motif20.motif 0.0232606
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00284814 metacluster_1/pattern_9 0.00835497 metacluster_1/pattern_17 0.039811900000000004	Pattern Name Homer Significance motif2.motif 0.00638864
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.025359 metacluster_1/pattern_9 0.00144874	Pattern Name Homer Significance motif2.motif 0.016310599999999998
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.054662199999999994	Pattern Name Homer Significance motif3.motif 0.0164261
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00020470200000000002	Pattern Name Homer Significance motif6.motif 0.0156763
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00336826 metacluster_1/pattern_10 0.027179000000000002	Pattern Name Homer Significance motif6.motif 0.0348645
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0007490110000000001 metacluster_1/pattern_17 0.026193	Pattern Name Homer Significance motif3.motif 5.18381e-06
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0017937	Pattern Name Homer Significance motif3.motif 0.00869135
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_8 1.2995e-13	Pattern Name Homer Significance motif5.motif 2.26498e-05
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_14 8.100119999999999e-05	Pattern Name Homer Significance motif18.motif 0.00975195
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 3.3706300000000004e-06	Pattern Name Homer Significance motif7.motif 0.000100354
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0158527	Pattern Name Homer Significance motif3.motif 0.014687100000000002
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_11 4.41481e-06	Pattern Name Homer Significance motif13.motif 0.001515
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967 metacluster_1/pattern_17 0.0282214	Pattern Name Homer Significance motif3.motif 0.00389574
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 7.76425e-06 metacluster_1/pattern_9 0.00114709 metacluster_1/pattern_11 0.00255211 metacluster_1/pattern_17 0.000638398 metacluster_1/pattern_18 0.00753187	Pattern Name Homer Significance motif2.motif 0.00208449
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00122435 metacluster_1/pattern_9 0.00104247	Pattern Name Homer Significance motif2.motif 6.75808e-05
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967 metacluster_1/pattern_17 0.0541832	Pattern Name Homer Significance motif3.motif 0.00167258
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00853147	Pattern Name Homer Significance motif3.motif 6.0121099999999996e-05
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0299308	Pattern Name Homer Significance motif3.motif 0.00280736
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_5 5.67591e-05	Pattern Name Homer Significance motif6.motif 0.00540424
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_8 6.46319e-22	Pattern Name Homer Significance motif5.motif 6.26329e-07
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00185165 metacluster_1/pattern_9 0.00114709	Pattern Name Homer Significance motif2.motif 8.00764e-05
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967 metacluster_1/pattern_17 0.0324485	Pattern Name Homer Significance motif3.motif 0.00457163
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0021972	Pattern Name Homer Significance motif3.motif 1.26214e-05
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0162153 metacluster_1/pattern_12 0.027780400000000004	Pattern Name Homer Significance motif6.motif 0.0412636
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0162386 metacluster_1/pattern_17 0.00166312	Pattern Name Homer Significance motif2.motif 0.0145091
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00111098	Pattern Name Homer Significance motif3.motif 0.000492466
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00200728	Pattern Name Homer Significance motif3.motif 0.000412241
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00196967	Pattern Name Homer Significance motif3.motif 0.00066345
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0021972	Pattern Name Homer Significance motif3.motif 9.635639999999999e-06
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_14 2.69747e-06	Pattern Name Homer Significance motif18.motif 0.00975195
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0379889	Pattern Name Homer Significance motif3.motif 0.00135627
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 4.2758100000000005e-13	Pattern Name Homer Significance motif7.motif 2.07736e-06

Unique TF-MoDISco TFs: #75

TF Name	Modisco	Homer
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00908027	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000300494	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00255052	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_5 0.050301599999999995	Absent
Hes1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0430006	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0166988	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00642711	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00230321	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_12 0.021475599999999997	Absent
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00205562	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00032177299999999997	Absent
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0289007	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0270057	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00912087	Absent
Rel	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0279224	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.042894699999999994	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_10 5.33262e-05	Absent
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0017457999999999998	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0356346	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0010714000000000001	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0362388 metacluster_1/pattern_10 0.046643800000000006	Absent
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00326714	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_5 0.050301599999999995 metacluster_1/pattern_12 0.028758699999999998	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.053748500000000005	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.010628299999999999	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_7 0.00567274	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00110355	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_12 0.014296000000000001	Absent
Nfatc1	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0219297	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00227121	Absent
Hes7	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0430006	Absent
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_19 0.021386900000000004	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0180655	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0180655	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00837649 metacluster_1/pattern_17 0.0390304	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0162153	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00321668	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_7 3.48932e-07 metacluster_1/pattern_11 0.0352666	Absent
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00545241	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0144048	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_5 0.0324902 metacluster_1/pattern_12 0.021475599999999997	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00957012	Absent
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.021941400000000003 metacluster_1/pattern_6 0.047264099999999996	Absent
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00545241	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00455992	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00166312	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000736985	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0128226	Absent
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00353378	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00756314	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_18 1.59597e-06	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00700271	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0017457999999999998	Absent
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_19 0.00553457	Absent
Maf	Pattern Name Modisco Significance metacluster_1/pattern_10 0.030817700000000003	Absent
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.021396000000000002	Absent
Ets2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0289007	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.042894699999999994	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00828448	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_7 4.904e-05	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0485109	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00016979700000000001	Absent
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0157893	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00893317	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_7 5.380640000000001e-08	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0185138	Absent
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_10 0.027179000000000002	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00998859	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_7 0.012552200000000001	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.025359 metacluster_1/pattern_3 0.0314946 metacluster_1/pattern_11 0.00389249 metacluster_1/pattern_17 0.026193 metacluster_1/pattern_18 0.00377777	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_5 0.00618172 metacluster_1/pattern_10 0.00585491	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_12 0.028758699999999998	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.025359 metacluster_1/pattern_9 0.00921384 metacluster_1/pattern_17 0.0446385	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_10 0.013455799999999999	Absent
Maff	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0407906	Absent

Unique Homer TFs: #3

TF Name	Modisco	Homer
E2f6	Absent	Pattern Name Homer Significance motif2.motif 0.043524400000000005
Zbtb1	Absent	Pattern Name Homer Significance motif2.motif 0.051669900000000005
E2f7	Absent	Pattern Name Homer Significance motif2.motif 0.0100191