# Parameters
data_name = "Th2_nippo;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_87-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_87-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:59:43,503 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	Th2 (Nippo infected)
Cell Group	T cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	127578	101506	10.2231	58219367	13943186	0.2396	9004219	0.1547	20074495	0.3449

Modelling Metadata

Metric	Value
auPRC	0.5825
Calibrated Recall at 50% FDR	0.211
Number of Positive Examples in Test Data	112098
Number of Negative Examples in Test Data	7958753
Imbalance Ratio in Test Data	0.0139
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #19

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 4736 SequenceContrib ScoresHyp_Contrib Scores	Ets1, Erg, Fli1, Elk1, Gabpa, Elk4, Etv2, Etv5, Etv4, Elf1, Elf2, Elk3, Spi1, Fev, Etv6, Ehf, Etv1, Etv3, XP_911724.4, Spib, Elf3, Elf4, Elf5, Spdef, Irf8, Irf4, Spic, Ets2, Stat4
metacluster_1/pattern_1 # seqlets: 3561 SequenceContrib ScoresHyp_Contrib Scores	Sp2, Sp4, Sp3, Sp1, Klf3, E2f4, Klf7, Klf6, Klf4, Klf8, Klf12, Klf1, Egr1, Zbtb17, Egr2, E2f1, Klf5, Sp5, Zfp281, Zfx, Wt1, Egr3
metacluster_1/pattern_2 # seqlets: 2802 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_3 # seqlets: 1625 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Atf1, Jdp2, Creb5, Atf7, Crem, Atf2, Tfe3, Tfec, Srebf1, Usf1, Tfeb, Mlx, Mitf, Xbp1, Rxrb, Arntl, Srebf2, Bhlhe40, Usf2, Clock, Atf3, Creb3l2, Tef, Nfil3, Jun, Mafb, Fosl2, Dbp, Npas2, Hlf
metacluster_1/pattern_4 # seqlets: 1240 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_5 # seqlets: 1094 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_6 # seqlets: 1019 SequenceContrib ScoresHyp_Contrib Scores	Mxi1, Rfx1
metacluster_1/pattern_7 # seqlets: 1008 SequenceContrib ScoresHyp_Contrib Scores	Bach2, Jund, Fos, Nfe2, Fosl1, Nfe2l2, Fosb, Junb, Bach1, Batf, Mafk, Mafa
metacluster_1/pattern_8 # seqlets: 906 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42, Maz, Klf15
metacluster_1/pattern_9 # seqlets: 735 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Irf7, Prdm1, Irf9, Stat2, Stat1, Irf3
metacluster_1/pattern_10 # seqlets: 711 SequenceContrib ScoresHyp_Contrib Scores	Gata4, Gata1, Gata2, Gata3, Tal1, Mecom, Gata6, Gata5
metacluster_1/pattern_11 # seqlets: 463 SequenceContrib ScoresHyp_Contrib Scores	Thap11, Zfp143, Tbx2
metacluster_1/pattern_12 # seqlets: 462 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Runx3, Cbfb
metacluster_1/pattern_13 # seqlets: 378 SequenceContrib ScoresHyp_Contrib Scores	Nfkb1, Rela, Nfkb2, Relb, Rel
metacluster_1/pattern_14 # seqlets: 299 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_15 # seqlets: 153 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_16 # seqlets: 110 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_17 # seqlets: 60 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2
metacluster_1/pattern_18 # seqlets: 35 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #144

TF Name	Pattern(s)
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00124343 metacluster_1/pattern_18 0.0378504
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.05204299999999999
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.0378504
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00136197
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013274 metacluster_1/pattern_18 0.0378504
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00136197
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 2.8139499999999997e-05
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000315656 metacluster_1/pattern_18 0.0378504
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.0378504
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000478521
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0130322
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.0418981
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0436149
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0010107999999999998
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.0571044
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00938066
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00136197 metacluster_1/pattern_18 0.0378504
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013274
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00136197
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00187816 metacluster_1/pattern_9 0.0198685
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.035031900000000005
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00811911
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.035031900000000005
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.023099599999999998
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.024741700000000002 metacluster_1/pattern_9 1.6659e-05
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.026300999999999998 metacluster_1/pattern_9 0.0138035
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.057677
Ets2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0284055
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0375035
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 1.5632299999999997e-06 metacluster_1/pattern_6 4.14971e-05 metacluster_1/pattern_8 1.9729e-05 metacluster_1/pattern_18 0.00392063
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00202721 metacluster_1/pattern_6 0.0173002 metacluster_1/pattern_8 0.05580740000000001 metacluster_1/pattern_18 0.0491637
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 5.71346e-06 metacluster_1/pattern_6 0.00045373900000000004 metacluster_1/pattern_8 0.000244585 metacluster_1/pattern_18 0.0378504
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00080701 metacluster_1/pattern_6 0.00143375 metacluster_1/pattern_8 3.05862e-05 metacluster_1/pattern_18 0.0253475
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 2.32802e-05 metacluster_1/pattern_6 0.00272075 metacluster_1/pattern_8 0.0175802 metacluster_1/pattern_18 0.05204299999999999
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000716505 metacluster_1/pattern_18 0.00595288
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000818665
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000818665 metacluster_1/pattern_6 0.0109214 metacluster_1/pattern_18 0.05204299999999999
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.016767400000000002
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0013359
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.018541299999999997
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.05858680000000001
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.053775300000000005 metacluster_1/pattern_6 0.016149700000000003 metacluster_1/pattern_8 0.046853399999999996
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00352633 metacluster_1/pattern_6 0.018822099999999998 metacluster_1/pattern_8 0.00725497
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0538779 metacluster_1/pattern_6 0.059814400000000004 metacluster_1/pattern_8 0.024449400000000003
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0101975
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.018541299999999997
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.018541299999999997
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0285118
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0285118 metacluster_1/pattern_6 0.018822099999999998 metacluster_1/pattern_8 0.05580740000000001 metacluster_1/pattern_14 0.05838430000000001 metacluster_1/pattern_18 0.0378504
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.053775300000000005 metacluster_1/pattern_6 0.00998193 metacluster_1/pattern_8 0.014956299999999999
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.05858680000000001
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_2 4.06236e-14
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_2 3.7719400000000004e-08 metacluster_1/pattern_6 0.0584072 metacluster_1/pattern_8 0.05580740000000001
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00330252
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.015353700000000001
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0104571 metacluster_1/pattern_7 0.000216127
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00330252
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00455743
Crem	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0104571
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00528069
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.022521799999999998
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_3 0.024184599999999997
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0336329
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0144244
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0167899
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_3 0.011390899999999999
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_3 0.015353700000000001
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.013715600000000001
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.01372
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0336329
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.014515799999999999
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_3 0.030610599999999998
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.030176400000000003 metacluster_1/pattern_6 0.03490530000000001 metacluster_1/pattern_8 0.018741999999999998
Clock	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0167899
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0341841 metacluster_1/pattern_7 7.718840000000001e-05
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0190722
Tef	Pattern Name Modisco Significance metacluster_1/pattern_3 0.019778099999999996
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.022521799999999998
Jun	Pattern Name Modisco Significance metacluster_1/pattern_3 0.026026499999999998 metacluster_1/pattern_7 0.0393797
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.030176400000000003 metacluster_1/pattern_7 0.0324723
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.04333680000000001 metacluster_1/pattern_7 0.000966967
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0463375
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0494955
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0524485
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 2.07886e-09
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 4.96499e-06
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 7.02285e-06
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 9.228760000000001e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000111998
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 5.4412400000000006e-08
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0172158 metacluster_1/pattern_8 0.014956299999999999
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.059814400000000004 metacluster_1/pattern_8 0.0007922319999999999 metacluster_1/pattern_15 2.26886e-10 metacluster_1/pattern_16 0.00942773
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_7 7.187600000000001e-07
Jund	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0012747
Fos	Pattern Name Modisco Significance metacluster_1/pattern_7 4.3331900000000004e-06
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_7 2.36907e-05
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.014037200000000001
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_7 4.5803900000000004e-05
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_7 4.5803900000000004e-05
Junb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0152153
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000216127
Batf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0105692
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0324723
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0194218
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_8 1.9729e-05
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_8 6.48309e-05
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0175802
Maz	Pattern Name Modisco Significance metacluster_1/pattern_8 0.026888299999999997
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_8 0.05580740000000001
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_9 5.69357e-11
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000535839
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_9 8.95223e-05
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00010538399999999999
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000535839
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00126609
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00145708
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0138035
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00514087
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00556311
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00044055900000000004
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0450086
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00081818
Mecom	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0076961
Gata6	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0246488
Gata5	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0372356
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_11 4.4958800000000003e-20
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_11 6.99826e-20
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_11 5.7918e-12
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00258867
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00979585
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00620637
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00685294
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_13 8.50007e-07
Rela	Pattern Name Modisco Significance metacluster_1/pattern_13 3.68803e-05
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_13 6.93127e-06
Relb	Pattern Name Modisco Significance metacluster_1/pattern_13 8.330780000000001e-05
Rel	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00517457
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_14 1.62149e-06
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00827085 metacluster_1/pattern_16 0.049850099999999994
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_15 8.214939999999999e-08 metacluster_1/pattern_16 0.0476039
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0005649730000000001 metacluster_1/pattern_16 0.00902036
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00528189 metacluster_1/pattern_16 0.00942773
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0122456 metacluster_1/pattern_16 0.00154296
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000153084

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #82

TF Name	Modisco	Homer
Fev	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0010107999999999998	Pattern Name Homer Significance motif2.motif 0.000439214
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00136197	Pattern Name Homer Significance motif2.motif 0.00033502900000000003
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.000216127	Pattern Name Homer Significance motif7.motif 0.0384345
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00811911	Pattern Name Homer Significance motif2.motif 0.00335257
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_13 6.93127e-06	Pattern Name Homer Significance motif17.motif 0.0005070130000000001
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0104571 metacluster_1/pattern_7 0.000216127	Pattern Name Homer Significance motif7.motif 0.00254877
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.05858680000000001	Pattern Name Homer Significance motif3.motif 0.00181269
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013274	Pattern Name Homer Significance motif2.motif 0.00056187
Junb	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0152153	Pattern Name Homer Significance motif7.motif 0.0241303
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_4 9.228760000000001e-06	Pattern Name Homer Significance motif13.motif 0.00699722
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 5.71346e-06 metacluster_1/pattern_6 0.00045373900000000004 metacluster_1/pattern_8 0.000244585 metacluster_1/pattern_18 0.0378504	Pattern Name Homer Significance motif3.motif 0.000135063
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0538779 metacluster_1/pattern_6 0.059814400000000004 metacluster_1/pattern_8 0.024449400000000003	Pattern Name Homer Significance motif3.motif 0.038847
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0194218	Pattern Name Homer Significance motif7.motif 0.027315499999999996
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.0378504	Pattern Name Homer Significance motif2.motif 0.00108132
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0436149	Pattern Name Homer Significance motif2.motif 0.05437859999999999
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.0378504	Pattern Name Homer Significance motif2.motif 0.000439214
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_2 4.06236e-14	Pattern Name Homer Significance motif1.motif 0.0005521090000000001
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00352633 metacluster_1/pattern_6 0.018822099999999998 metacluster_1/pattern_8 0.00725497	Pattern Name Homer Significance motif3.motif 0.00269155
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.035031900000000005	Pattern Name Homer Significance motif2.motif 0.0164375
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0013359	Pattern Name Homer Significance motif3.motif 0.0008763880000000001
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.04333680000000001 metacluster_1/pattern_7 0.000966967	Pattern Name Homer Significance motif7.motif 0.00220476
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00202721 metacluster_1/pattern_6 0.0173002 metacluster_1/pattern_8 0.05580740000000001 metacluster_1/pattern_18 0.0491637	Pattern Name Homer Significance motif3.motif 0.00797644
Jund	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0012747	Pattern Name Homer Significance motif7.motif 0.00802981
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 1.5632299999999997e-06 metacluster_1/pattern_6 4.14971e-05 metacluster_1/pattern_8 1.9729e-05 metacluster_1/pattern_18 0.00392063	Pattern Name Homer Significance motif3.motif 0.000135063
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00136197 metacluster_1/pattern_18 0.0378504	Pattern Name Homer Significance motif2.motif 0.00041227300000000006
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000111998	Pattern Name Homer Significance motif13.motif 0.00699722
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_4 7.02285e-06	Pattern Name Homer Significance motif13.motif 0.00267339
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000818665	Pattern Name Homer Significance motif3.motif 0.00034545800000000004
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_8 0.05580740000000001	Pattern Name Homer Significance motif3.motif 0.00444589
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000478521	Pattern Name Homer Significance motif2.motif 0.000542106
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_11 5.7918e-12	Pattern Name Homer Significance motif5.motif 7.96747e-05
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_11 4.4958800000000003e-20	Pattern Name Homer Significance motif5.motif 1.09808e-06
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_13 8.50007e-07	Pattern Name Homer Significance motif17.motif 7.06943e-05
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_0 0.000315656 metacluster_1/pattern_18 0.0378504	Pattern Name Homer Significance motif2.motif 7.28259e-05
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.014037200000000001	Pattern Name Homer Significance motif7.motif 0.044248699999999995
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_11 6.99826e-20	Pattern Name Homer Significance motif5.motif 1.13181e-05
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_7 2.36907e-05	Pattern Name Homer Significance motif7.motif 0.0221881
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0324723	Pattern Name Homer Significance motif7.motif 0.052389599999999995
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_7 7.187600000000001e-07	Pattern Name Homer Significance motif7.motif 0.00808128
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.0571044	Pattern Name Homer Significance motif2.motif 0.00278666
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00124343 metacluster_1/pattern_18 0.0378504	Pattern Name Homer Significance motif2.motif 0.00033502900000000003
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0130322	Pattern Name Homer Significance motif2.motif 0.00611968
Spic	Pattern Name Modisco Significance metacluster_1/pattern_0 0.057677	Pattern Name Homer Significance motif2.motif 0.0205069
Relb	Pattern Name Modisco Significance metacluster_1/pattern_13 8.330780000000001e-05	Pattern Name Homer Significance motif17.motif 7.06943e-05
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 5.4412400000000006e-08	Pattern Name Homer Significance motif10.motif 0.000141645
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000716505 metacluster_1/pattern_18 0.00595288	Pattern Name Homer Significance motif3.motif 0.000135063
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00136197	Pattern Name Homer Significance motif2.motif 0.00033502900000000003
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_0 2.8139499999999997e-05	Pattern Name Homer Significance motif2.motif 0.00053838
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0285118	Pattern Name Homer Significance motif3.motif 0.0575972
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.018541299999999997	Pattern Name Homer Significance motif3.motif 0.00444589
Jun	Pattern Name Modisco Significance metacluster_1/pattern_3 0.026026499999999998 metacluster_1/pattern_7 0.0393797	Pattern Name Homer Significance motif7.motif 0.0291952
Spib	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00187816 metacluster_1/pattern_9 0.0198685	Pattern Name Homer Significance motif2.motif 0.05437859999999999
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0341841 metacluster_1/pattern_7 7.718840000000001e-05	Pattern Name Homer Significance motif7.motif 0.00263688
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_4 4.96499e-06	Pattern Name Homer Significance motif13.motif 0.00267339
Crem	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0104571	Pattern Name Homer Significance motif18.motif 0.03500109999999999
Rela	Pattern Name Modisco Significance metacluster_1/pattern_13 3.68803e-05	Pattern Name Homer Significance motif17.motif 0.000415502
Rel	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00517457	Pattern Name Homer Significance motif17.motif 0.0312442
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00938066	Pattern Name Homer Significance motif2.motif 0.0124018
Erg	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.05204299999999999	Pattern Name Homer Significance motif2.motif 0.000439214
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_4 2.07886e-09	Pattern Name Homer Significance motif13.motif 0.0008268710000000001
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_2 3.7719400000000004e-08 metacluster_1/pattern_6 0.0584072 metacluster_1/pattern_8 0.05580740000000001	Pattern Name Homer Significance motif1.motif 0.00118826
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_14 1.62149e-06	Pattern Name Homer Significance motif15.motif 0.0016649999999999998
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00136197	Pattern Name Homer Significance motif2.motif 0.00061024
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000818665 metacluster_1/pattern_6 0.0109214 metacluster_1/pattern_18 0.05204299999999999	Pattern Name Homer Significance motif3.motif 0.000639735
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 2.32802e-05 metacluster_1/pattern_6 0.00272075 metacluster_1/pattern_8 0.0175802 metacluster_1/pattern_18 0.05204299999999999	Pattern Name Homer Significance motif3.motif 0.000135063
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.00126769 metacluster_1/pattern_18 0.0418981	Pattern Name Homer Significance motif2.motif 0.000282822
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.016767400000000002	Pattern Name Homer Significance motif3.motif 0.030508499999999997
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_7 4.5803900000000004e-05	Pattern Name Homer Significance motif7.motif 0.0190375
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_0 0.023099599999999998	Pattern Name Homer Significance motif2.motif 0.055695299999999996
Fos	Pattern Name Modisco Significance metacluster_1/pattern_7 4.3331900000000004e-06	Pattern Name Homer Significance motif7.motif 3.0604699999999995e-05
Batf	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0105692	Pattern Name Homer Significance motif7.motif 0.03807990000000001
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00080701 metacluster_1/pattern_6 0.00143375 metacluster_1/pattern_8 3.05862e-05 metacluster_1/pattern_18 0.0253475	Pattern Name Homer Significance motif3.motif 0.00342503
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0101975	Pattern Name Homer Significance motif3.motif 0.0008763880000000001
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.053775300000000005 metacluster_1/pattern_6 0.016149700000000003 metacluster_1/pattern_8 0.046853399999999996	Pattern Name Homer Significance motif3.motif 0.00527415
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.015353700000000001	Pattern Name Homer Significance motif18.motif 0.03500109999999999
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_0 0.035031900000000005	Pattern Name Homer Significance motif2.motif 0.027684300000000002
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_7 4.5803900000000004e-05	Pattern Name Homer Significance motif7.motif 0.00295125
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0013274 metacluster_1/pattern_18 0.0378504	Pattern Name Homer Significance motif2.motif 0.00033502900000000003
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.030176400000000003 metacluster_1/pattern_7 0.0324723	Pattern Name Homer Significance motif7.motif 0.0291952 motif18.motif 0.03500109999999999
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00330252	Pattern Name Homer Significance motif6.motif 0.0462782
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_1 0.018541299999999997	Pattern Name Homer Significance motif3.motif 0.030508499999999997
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.018541299999999997	Pattern Name Homer Significance motif3.motif 0.031153899999999998

Unique TF-MoDISco TFs: #62

TF Name	Modisco	Homer
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0375035	Absent
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_9 8.95223e-05	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_3 0.019778099999999996	Absent
Gata5	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0372356	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0524485	Absent
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00010538399999999999	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0190722	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0336329	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00827085 metacluster_1/pattern_16 0.049850099999999994	Absent
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000535839	Absent
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00556311	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000153084	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_3 0.030610599999999998	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00455743	Absent
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.01372	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00528069	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0285118 metacluster_1/pattern_6 0.018822099999999998 metacluster_1/pattern_8 0.05580740000000001 metacluster_1/pattern_14 0.05838430000000001 metacluster_1/pattern_18 0.0378504	Absent
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.000535839	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0005649730000000001 metacluster_1/pattern_16 0.00902036	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00528189 metacluster_1/pattern_16 0.00942773	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0122456 metacluster_1/pattern_16 0.00154296	Absent
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0450086	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0167899	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.059814400000000004 metacluster_1/pattern_8 0.0007922319999999999 metacluster_1/pattern_15 2.26886e-10 metacluster_1/pattern_16 0.00942773	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00126609	Absent
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00044055900000000004	Absent
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_0 0.024741700000000002 metacluster_1/pattern_9 1.6659e-05	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0167899	Absent
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00685294	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_3 0.024184599999999997	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_15 8.214939999999999e-08 metacluster_1/pattern_16 0.0476039	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.05858680000000001	Absent
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00514087	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.022521799999999998	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00145708	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.030176400000000003 metacluster_1/pattern_6 0.03490530000000001 metacluster_1/pattern_8 0.018741999999999998	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.053775300000000005 metacluster_1/pattern_6 0.00998193 metacluster_1/pattern_8 0.014956299999999999	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00330252	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.014515799999999999	Absent
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_8 6.48309e-05	Absent
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_10 0.00081818	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_3 0.015353700000000001	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_8 0.026888299999999997	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0336329	Absent
Mecom	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0076961	Absent
Gata6	Pattern Name Modisco Significance metacluster_1/pattern_10 0.0246488	Absent
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00979585	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.022521799999999998	Absent
Ets2	Pattern Name Modisco Significance metacluster_1/pattern_0 0.0284055	Absent
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_0 0.026300999999999998 metacluster_1/pattern_9 0.0138035	Absent
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_8 1.9729e-05	Absent
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_9 5.69357e-11	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0138035	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0144244	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_3 0.011390899999999999	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0494955	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_3 0.0463375	Absent
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00258867	Absent
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00620637	Absent
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0175802	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.013715600000000001	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0172158 metacluster_1/pattern_8 0.014956299999999999	Absent

Unique Homer TFs: #5

TF Name	Modisco	Homer
E2f6	Absent	Pattern Name Homer Significance motif3.motif 0.0136724
Zbtb1	Absent	Pattern Name Homer Significance motif3.motif 0.030508499999999997
Mzf1	Absent	Pattern Name Homer Significance motif17.motif 0.0462091
E2f3	Absent	Pattern Name Homer Significance motif3.motif 0.0575972
E2f7	Absent	Pattern Name Homer Significance motif3.motif 0.00444589