# Parameters
data_name = "Tfh_LCMV;A;CL"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_23-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_23-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 18:45:13,832 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	Tfh from infected with LCMV
Cell Group	T cells
Experiment Name	ATAC
Experiment Group	Casellas Lab

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	96779	72877	10.9615	39246225	7428246	0.1894	5678432	0.1448	13334941	0.3399

Modelling Metadata

Metric	Value
auPRC	0.5843
Calibrated Recall at 50% FDR	0.217
Number of Positive Examples in Test Data	80787
Number of Negative Examples in Test Data	7990064
Imbalance Ratio in Test Data	0.01
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #24

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 5764 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 4729 SequenceContrib ScoresHyp_Contrib Scores	Gabpa, Ets1, Etv2, Erg, Sp2, Fli1, Sp1, Elk1, Spi1, Elk4, Sp3, Maz, Etv4, Elf1, Mxi1, Sp5, Etv6, Elf3, Ehf, Zbtb17, Wt1, Elk3, Etv1, Etv5, Rela, Klf15, Klf3, Fev, Klf6, Usf2, Etv3, XP_911724.4, Gata1, Sp4, Spib, Bcl6, Elf2, Elf5, Elf4, Zfx, Irf3, Prdm1, Tal1, Zfp281, Taf1, Ptf1a, Myc, Zfp740, Nr1h4, Egr1
metacluster_1/pattern_2 # seqlets: 3923 SequenceContrib ScoresHyp_Contrib Scores	Klf4, Klf5, E2f4, Klf7, Klf8, Klf12, Egr2, Klf1, E2f1, Sall4, Egr3, Srebf2
metacluster_1/pattern_3 # seqlets: 1565 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_4 # seqlets: 1463 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Irf7, Irf8, Stat1, Stat2, Batf3, Irf4, Irf9
metacluster_1/pattern_5 # seqlets: 1424 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_6 # seqlets: 873 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_7 # seqlets: 691 SequenceContrib ScoresHyp_Contrib Scores	Yy1, Zfp42, Rfx1
metacluster_1/pattern_8 # seqlets: 691 SequenceContrib ScoresHyp_Contrib Scores	Creb1, Atf2, Atf1, Atf7, Crem, Jdp2, Creb5, Atf3, Fosl2, Jun, Nfil3, Rxrb, Fosl1, Hlf
metacluster_1/pattern_9 # seqlets: 625 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Cbfb, Runx3
metacluster_1/pattern_10 # seqlets: 625 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_11 # seqlets: 616 SequenceContrib ScoresHyp_Contrib Scores	Rfx3, Rfx2, Rfx4, Rfx6, Rfx7
metacluster_1/pattern_12 # seqlets: 479 SequenceContrib ScoresHyp_Contrib Scores	Fos, Batf, Jund, Junb, Fosb, Bach2, Nfe2l2, Nfe2, Bach1, Mafk, Mafa, Mafb, Mafg, Maff, Maf
metacluster_1/pattern_13 # seqlets: 478 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfe3, Tfeb, Arntl, Tfec, Mitf, Srebf1, Bhlhe40, Clock, Arnt, Mlx, Npas2, Mycn, Tcfl5, Max, Creb3l2, Bhlhe41, Xbp1, Mlxip
metacluster_1/pattern_14 # seqlets: 263 SequenceContrib ScoresHyp_Contrib Scores	Pou2f2, Pou2f1
metacluster_1/pattern_15 # seqlets: 226 SequenceContrib ScoresHyp_Contrib Scores	Nfkb2, Nfkb1, Relb, Rel
metacluster_1/pattern_16 # seqlets: 186 SequenceContrib ScoresHyp_Contrib Scores	Tcf7l2, Lef1, Tcf3, Tcf7l1, Tcf7, Pbx1
metacluster_1/pattern_17 # seqlets: 139 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_18 # seqlets: 118 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_19 # seqlets: 101 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_20 # seqlets: 86 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_21 # seqlets: 83 SequenceContrib ScoresHyp_Contrib Scores	Nfib, Nfia, Nfic
metacluster_1/pattern_22 # seqlets: 67 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_23 # seqlets: 39 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #158

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 1.0130899999999999e-14
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 1.10156e-07
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00468124 metacluster_1/pattern_19 0.0353125
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00311718 metacluster_1/pattern_10 0.0517783 metacluster_1/pattern_19 0.017755700000000003
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 1.8169200000000002e-05
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00264617 metacluster_1/pattern_19 0.0461889
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 7.789300000000001e-05 metacluster_1/pattern_2 4.26942e-09 metacluster_1/pattern_7 0.000237243 metacluster_1/pattern_17 0.000673425 metacluster_1/pattern_19 8.821190000000001e-05
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0030791 metacluster_1/pattern_19 0.017755700000000003
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 8.427659999999999e-05 metacluster_1/pattern_2 0.00035173699999999997 metacluster_1/pattern_7 0.000776871 metacluster_1/pattern_17 0.00401952 metacluster_1/pattern_19 0.017755700000000003
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00365328 metacluster_1/pattern_19 0.0516016
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00113292
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00416526
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00030801099999999996 metacluster_1/pattern_2 1.1049799999999999e-08 metacluster_1/pattern_7 0.00203885 metacluster_1/pattern_17 0.00108875 metacluster_1/pattern_19 0.00642281
Maz	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0003085 metacluster_1/pattern_2 0.00886238 metacluster_1/pattern_19 0.0500481
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00311718 metacluster_1/pattern_19 0.0279714
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000592174
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0006628669999999999
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000834169 metacluster_1/pattern_2 0.0006559589999999999
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00670534
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0567911
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.020840900000000002
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00211384 metacluster_1/pattern_2 0.00126678 metacluster_1/pattern_7 0.030104500000000003 metacluster_1/pattern_19 0.0279714
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00244367 metacluster_1/pattern_2 0.0046172 metacluster_1/pattern_19 0.0455517
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0030791 metacluster_1/pattern_19 0.0286285
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00365328 metacluster_1/pattern_19 0.021631400000000002
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00416526 metacluster_1/pattern_19 0.0218416
Rela	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00453941 metacluster_1/pattern_15 0.00019051700000000002
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00453941 metacluster_1/pattern_2 0.0414931
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00556737 metacluster_1/pattern_2 1.33695e-07 metacluster_1/pattern_19 0.00642281
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00556737
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00574438 metacluster_1/pattern_2 0.000275374 metacluster_1/pattern_19 0.0183
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00670534 metacluster_1/pattern_8 4.47517e-05 metacluster_1/pattern_13 0.00442487 metacluster_1/pattern_17 0.026661900000000002
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00670534
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00670534
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00713785
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00785671 metacluster_1/pattern_2 0.000698833 metacluster_1/pattern_19 0.0461889
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00960607 metacluster_1/pattern_4 0.00908235
Bcl6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.013929599999999999
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0139624
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.03490580000000001
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.016052700000000003
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0170856 metacluster_1/pattern_5 0.05157949999999999 metacluster_1/pattern_7 0.00451024 metacluster_1/pattern_17 0.00285326 metacluster_1/pattern_19 0.0183
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0182362 metacluster_1/pattern_4 0.00953116
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.020296400000000003 metacluster_1/pattern_4 0.00251178
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.023814500000000002
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.030248900000000002 metacluster_1/pattern_2 0.0046172 metacluster_1/pattern_19 0.0500481
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0368425 metacluster_1/pattern_7 4.5531699999999995e-06
Ptf1a	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0458839
Myc	Pattern Name Modisco Significance metacluster_1/pattern_1 0.049251300000000005 metacluster_1/pattern_13 0.0238746
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0497003 metacluster_1/pattern_2 0.0375783
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.055819900000000006
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0581563 metacluster_1/pattern_2 0.0421599 metacluster_1/pattern_19 0.0516016
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000450965
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00035173699999999997 metacluster_1/pattern_19 0.0389935
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00036426599999999997 metacluster_1/pattern_19 0.00206739
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000392628
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000627614
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0006559589999999999
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0288062
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.04843
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.015840200000000002 metacluster_1/pattern_19 0.0516016
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.022333000000000002
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0243576
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0306288 metacluster_1/pattern_13 0.00592386
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 7.56919e-15
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 5.80422e-11
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 9.0455e-09
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 3.32371e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 3.32371e-06
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.95989e-13
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00111255
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_4 3.5037100000000004e-05
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000164418
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0007036439999999999
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00111255
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00111255
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00908235
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00229512
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.39265e-07
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_6 1.02531e-23
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_6 1.22148e-21
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_6 6.210000000000001e-13
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_7 9.0524e-06
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0104796
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0310116 metacluster_1/pattern_11 7.24268e-11
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00197091 metacluster_1/pattern_13 0.0285812
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00196652 metacluster_1/pattern_13 0.0585719
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0184139 metacluster_1/pattern_13 0.024533000000000003
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000545473 metacluster_1/pattern_13 0.039537699999999995
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0090162
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00159852 metacluster_1/pattern_12 0.000188215 metacluster_1/pattern_13 0.05362190000000001
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0018135999999999998 metacluster_1/pattern_13 0.04989880000000001
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0090162 metacluster_1/pattern_12 0.000188215
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.033137099999999996 metacluster_1/pattern_12 1.4695699999999999e-05
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.033882300000000004 metacluster_1/pattern_12 1.3808699999999999e-05
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0435014
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0459439
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0500559 metacluster_1/pattern_12 0.018090000000000002
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.051540499999999996 metacluster_1/pattern_13 0.0285812
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00925274
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0102417
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0102417
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0102417
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000978462
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0451202
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_11 3.036e-05
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000332271
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000343945
Fos	Pattern Name Modisco Significance metacluster_1/pattern_12 1.3808699999999999e-05
Batf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.019750099999999996
Jund	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00820987
Junb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.018090000000000002
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000188215
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000908975
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00163468
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00146455
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00157929
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_12 0.012243299999999999
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00759004
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0224118
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_12 0.028355
Maff	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0376026
Maf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.050977800000000004
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.018550599999999997
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000678555
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000189127
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00548519
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000688551
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00039570699999999997
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.029619200000000002
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0160526
Clock	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0218713
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0438897
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00700026
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00354677
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0118957
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0134334
Max	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0155566
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0332411
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0262032
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0475693
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0585719
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00372249
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0172666
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_15 1.77795e-05
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_15 1.77795e-05
Relb	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0007989560000000001
Rel	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00497357
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00883049 metacluster_1/pattern_18 0.000225364
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00529201 metacluster_1/pattern_18 9.40481e-07
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00779234 metacluster_1/pattern_18 0.000305744
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0410156 metacluster_1/pattern_18 0.000225364
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05855930000000001 metacluster_1/pattern_18 0.00513962
Pbx1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05855930000000001
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000105927
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_21 0.000166617
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_21 0.000606338
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_21 0.0441246

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #53

TF Name	Modisco	Homer
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0006559589999999999	Pattern Name Homer Significance motif3.motif 0.0141972
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_3 9.0455e-09	Pattern Name Homer Significance motif7.motif 3.12183e-05
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00264617 metacluster_1/pattern_19 0.0461889	Pattern Name Homer Significance motif2.motif 5.75914e-06
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_3 5.80422e-11	Pattern Name Homer Significance motif7.motif 3.85896e-05
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00365328 metacluster_1/pattern_19 0.021631400000000002	Pattern Name Homer Significance motif2.motif 2.68276e-07
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00311718 metacluster_1/pattern_19 0.0279714	Pattern Name Homer Significance motif2.motif 0.00510273
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000592174	Pattern Name Homer Significance motif2.motif 0.00619822
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00036426599999999997 metacluster_1/pattern_19 0.00206739	Pattern Name Homer Significance motif3.motif 0.000778492
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_1 8.427659999999999e-05 metacluster_1/pattern_2 0.00035173699999999997 metacluster_1/pattern_7 0.000776871 metacluster_1/pattern_17 0.00401952 metacluster_1/pattern_19 0.017755700000000003	Pattern Name Homer Significance motif3.motif 0.00535454
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0030791 metacluster_1/pattern_19 0.0286285	Pattern Name Homer Significance motif2.motif 0.000407058
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00556737	Pattern Name Homer Significance motif2.motif 0.00334155
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00030801099999999996 metacluster_1/pattern_2 1.1049799999999999e-08 metacluster_1/pattern_7 0.00203885 metacluster_1/pattern_17 0.00108875 metacluster_1/pattern_19 0.00642281	Pattern Name Homer Significance motif3.motif 5.403479999999999e-05
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 1.10156e-07	Pattern Name Homer Significance motif1.motif 0.000574497
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 1.8169200000000002e-05	Pattern Name Homer Significance motif2.motif 0.00126214
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00311718 metacluster_1/pattern_10 0.0517783 metacluster_1/pattern_19 0.017755700000000003	Pattern Name Homer Significance motif2.motif 1.6153699999999997e-05
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00416526	Pattern Name Homer Significance motif2.motif 5.74355e-06
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00365328 metacluster_1/pattern_19 0.0516016	Pattern Name Homer Significance motif2.motif 0.00028124599999999997
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0139624	Pattern Name Homer Significance motif2.motif 0.0208051
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.016052700000000003	Pattern Name Homer Significance motif2.motif 0.00334155
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000627614	Pattern Name Homer Significance motif3.motif 0.0009958039999999999
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00670534	Pattern Name Homer Significance motif2.motif 0.000111901
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00468124 metacluster_1/pattern_19 0.0353125	Pattern Name Homer Significance motif2.motif 0.00339796
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00416526 metacluster_1/pattern_19 0.0218416	Pattern Name Homer Significance motif2.motif 3.0469700000000002e-06
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0104796	Pattern Name Homer Significance motif13.motif 0.00601071
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.020840900000000002	Pattern Name Homer Significance motif2.motif 0.00345771
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000450965	Pattern Name Homer Significance motif3.motif 0.0575875
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00211384 metacluster_1/pattern_2 0.00126678 metacluster_1/pattern_7 0.030104500000000003 metacluster_1/pattern_19 0.0279714	Pattern Name Homer Significance motif3.motif 0.0555922
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00785671 metacluster_1/pattern_2 0.000698833 metacluster_1/pattern_19 0.0461889	Pattern Name Homer Significance motif3.motif 0.019938900000000002
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_6 1.02531e-23	Pattern Name Homer Significance motif5.motif 0.00255337
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00556737 metacluster_1/pattern_2 1.33695e-07 metacluster_1/pattern_19 0.00642281	Pattern Name Homer Significance motif3.motif 5.403479999999999e-05
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.04843	Pattern Name Homer Significance motif3.motif 0.040843800000000006
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0567911	Pattern Name Homer Significance motif2.motif 0.0446475
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000392628	Pattern Name Homer Significance motif3.motif 0.0006084630000000001
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.39265e-07	Pattern Name Homer Significance motif10.motif 1.7716599999999999e-06
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0581563 metacluster_1/pattern_2 0.0421599 metacluster_1/pattern_19 0.0516016	Pattern Name Homer Significance motif3.motif 0.0149656
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_3 7.56919e-15	Pattern Name Homer Significance motif7.motif 8.15789e-07
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_7 9.0524e-06	Pattern Name Homer Significance motif13.motif 0.00018559299999999998
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 1.0130899999999999e-14	Pattern Name Homer Significance motif1.motif 1.95064e-05
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00035173699999999997 metacluster_1/pattern_19 0.0389935	Pattern Name Homer Significance motif3.motif 0.0158282
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00670534	Pattern Name Homer Significance motif2.motif 0.010469299999999999
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_1 7.789300000000001e-05 metacluster_1/pattern_2 4.26942e-09 metacluster_1/pattern_7 0.000237243 metacluster_1/pattern_17 0.000673425 metacluster_1/pattern_19 8.821190000000001e-05	Pattern Name Homer Significance motif3.motif 2.28411e-05
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00574438 metacluster_1/pattern_2 0.000275374 metacluster_1/pattern_19 0.0183	Pattern Name Homer Significance motif3.motif 0.0006084630000000001
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00883049 metacluster_1/pattern_18 0.000225364	Pattern Name Homer Significance motif16.motif 0.0180669
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0030791 metacluster_1/pattern_19 0.017755700000000003	Pattern Name Homer Significance motif2.motif 0.000100845
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.015840200000000002 metacluster_1/pattern_19 0.0516016	Pattern Name Homer Significance motif3.motif 0.05743380000000001
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_6 6.210000000000001e-13	Pattern Name Homer Significance motif5.motif 0.00207343
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0368425 metacluster_1/pattern_7 4.5531699999999995e-06	Pattern Name Homer Significance motif13.motif 1.91782e-05
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.03490580000000001	Pattern Name Homer Significance motif2.motif 0.0446475
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00670534	Pattern Name Homer Significance motif2.motif 0.000100845
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0288062	Pattern Name Homer Significance motif3.motif 0.05743380000000001
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_3 3.32371e-06	Pattern Name Homer Significance motif7.motif 0.00191927
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_6 1.22148e-21	Pattern Name Homer Significance motif5.motif 0.00356744
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_3 3.32371e-06	Pattern Name Homer Significance motif7.motif 0.00257241

Unique TF-MoDISco TFs: #105

TF Name	Modisco	Homer
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00111255	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0243576	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_11 3.036e-05	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0134334	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0182362 metacluster_1/pattern_4 0.00953116	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000978462	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00670534 metacluster_1/pattern_8 4.47517e-05 metacluster_1/pattern_13 0.00442487 metacluster_1/pattern_17 0.026661900000000002	Absent
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00197091 metacluster_1/pattern_13 0.0285812	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00146455	Absent
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0224118	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0438897	Absent
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0170856 metacluster_1/pattern_5 0.05157949999999999 metacluster_1/pattern_7 0.00451024 metacluster_1/pattern_17 0.00285326 metacluster_1/pattern_19 0.0183	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00548519	Absent
Pou2f2	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00372249	Absent
Mafg	Pattern Name Modisco Significance metacluster_1/pattern_12 0.028355	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.029619200000000002	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.018090000000000002	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0262032	Absent
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.022333000000000002	Absent
Pou2f1	Pattern Name Modisco Significance metacluster_1/pattern_14 0.0172666	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000188215	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00700026	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000343945	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.018550599999999997	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0160526	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0332411	Absent
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0306288 metacluster_1/pattern_13 0.00592386	Absent
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00529201 metacluster_1/pattern_18 9.40481e-07	Absent
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00960607 metacluster_1/pattern_4 0.00908235	Absent
Bcl6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.013929599999999999	Absent
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00713785	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0451202	Absent
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_15 1.77795e-05	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.051540499999999996 metacluster_1/pattern_13 0.0285812	Absent
Maff	Pattern Name Modisco Significance metacluster_1/pattern_12 0.0376026	Absent
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_4 0.000164418	Absent
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_9 0.00925274	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.033137099999999996 metacluster_1/pattern_12 1.4695699999999999e-05	Absent
Rela	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00453941 metacluster_1/pattern_15 0.00019051700000000002	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.000908975	Absent
Maf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.050977800000000004	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0475693	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0118957	Absent
Mxi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0006628669999999999	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_12 0.019750099999999996	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000834169 metacluster_1/pattern_2 0.0006559589999999999	Absent
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05855930000000001 metacluster_1/pattern_18 0.00513962	Absent
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0102417	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00354677	Absent
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_4 1.95989e-13	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00163468	Absent
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0102417	Absent
Klf15	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00453941 metacluster_1/pattern_2 0.0414931	Absent
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_17 0.000105927	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0435014	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00111255	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00196652 metacluster_1/pattern_13 0.0585719	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000678555	Absent
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0184139 metacluster_1/pattern_13 0.024533000000000003	Absent
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00111255	Absent
Pbx1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.05855930000000001	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0090162 metacluster_1/pattern_12 0.000188215	Absent
Rel	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00497357	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_1 0.049251300000000005 metacluster_1/pattern_13 0.0238746	Absent
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00159852 metacluster_1/pattern_12 0.000188215 metacluster_1/pattern_13 0.05362190000000001	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00820987	Absent
Wt1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00244367 metacluster_1/pattern_2 0.0046172 metacluster_1/pattern_19 0.0455517	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0155566	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_12 0.012243299999999999	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0500559 metacluster_1/pattern_12 0.018090000000000002	Absent
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00113292	Absent
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0410156 metacluster_1/pattern_18 0.000225364	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_4 0.0007036439999999999	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0018135999999999998 metacluster_1/pattern_13 0.04989880000000001	Absent
Nr1h4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.055819900000000006	Absent
Maz	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0003085 metacluster_1/pattern_2 0.00886238 metacluster_1/pattern_19 0.0500481	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0090162	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000189127	Absent
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.020296400000000003 metacluster_1/pattern_4 0.00251178	Absent
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_15 1.77795e-05	Absent
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00908235	Absent
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_21 0.000606338	Absent
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_21 0.0441246	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0497003 metacluster_1/pattern_2 0.0375783	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000545473 metacluster_1/pattern_13 0.039537699999999995	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_11 0.000332271	Absent
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00779234 metacluster_1/pattern_18 0.000305744	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.033882300000000004 metacluster_1/pattern_12 1.3808699999999999e-05	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_1 0.030248900000000002 metacluster_1/pattern_2 0.0046172 metacluster_1/pattern_19 0.0500481	Absent
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_4 3.5037100000000004e-05	Absent
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_9 0.0102417	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0218713	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_12 1.3808699999999999e-05	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000688551	Absent
Mlxip	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0585719	Absent
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_21 0.000166617	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00157929	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_7 0.0310116 metacluster_1/pattern_11 7.24268e-11	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00039570699999999997	Absent
Ptf1a	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0458839	Absent
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_4 0.00229512	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_12 0.00759004	Absent
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.023814500000000002	Absent
Relb	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0007989560000000001	Absent
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0459439	Absent

Unique Homer TFs: #5

TF Name	Modisco	Homer
Spic	Absent	Pattern Name Homer Significance motif2.motif 0.050237199999999996
Irf6	Absent	Pattern Name Homer Significance motif2.motif 0.026092400000000005
Spdef	Absent	Pattern Name Homer Significance motif2.motif 0.0541481
Zbtb1	Absent	Pattern Name Homer Significance motif3.motif 0.040843800000000006
E2f7	Absent	Pattern Name Homer Significance motif3.motif 0.0479245