# Parameters
data_name = "apCD4Eff;D;GEO"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
tomtom_report_root = "http://mitra.stanford.edu/kundaje/msharmin/report/tomtom_outs/cells"
task_dir = "task_208-naivegw"
perf_file = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/fineFactorized/task_208-naivegw/NaiveauPRC.txt"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
reportfile = "/mnt/lab_data/kundaje/msharmin/annotations/filtering samples_MS2.xlsx"
sheetname = "filter23"

from matlas.reports import display_metadata

load data from labcluster

Using TensorFlow backend.
2019-08-30 19:28:13,634 [WARNING] git-lfs not installed

display_metadata(data_name, perf_file, reportfile, sheetname)

Sample Information

MetaData Name	Description
Cell type	Activated primary CD4 effector cells, isolated ex vivo
Cell Group	T cells
Experiment Name	DHS
Experiment Group	GEO

Pipeline Output

replicate	Naïve overlap peaks	IDR peaks	TSS enrichment (< 8 is very poor <10 is low)	Final number of unique mapping, dup-filtered, chrM filtered reads	Number of reads in called peak regions	Fraction of reads in called peak regions	Number of reads in promoter regions	Fraction of reads in promoter regions	Number of reads in enhancer regions	Fraction of reads in enhancer regions
rep1	97952	76175	10.576	89807626	19257061	0.2145	12927877	0.144	32435929	0.3612

Modelling Metadata

Metric	Value
auPRC	0.6148
Calibrated Recall at 50% FDR	0.211
Number of Positive Examples in Test Data	91698
Number of Negative Examples in Test Data	7979153
Imbalance Ratio in Test Data	0.0114
Test Chromosomes	chr2, chr3, chr19

from matlas.reports import display_paiwise_pattern_comparison
from matlas.reports import display_denovo_patterns

display_denovo_patterns(data_name, modisco_root=modisco_root)

TF-MoDISco is using the TensorFlow backend.

The following two links show list of Denovo Patterns and corresponding Motifs discovered by TF-MoDISco

Click here for Denovo Patterns by TF-MoDISco: #23

Pattern Name	TF Name(s)	Modisco
metacluster_1/pattern_0 # seqlets: 5826 SequenceContrib ScoresHyp_Contrib Scores	Ctcf, Ctcfl
metacluster_1/pattern_1 # seqlets: 4940 SequenceContrib ScoresHyp_Contrib Scores	Erg, Ets1, Elk1, Gabpa, Fli1, Elk4, Etv2, Etv4, Etv5, Elk3, Elf2, Spi1, Etv6, Elf1, Ehf, Fev, Etv3, Etv1, XP_911724.4, Spib, Elf3, Elf4, Elf5, Stat4, Irf8, Irf4, Ets2, Spdef, Spic
metacluster_1/pattern_2 # seqlets: 4538 SequenceContrib ScoresHyp_Contrib Scores	Sp4, Sp2, Klf3, Sp3, Sp1, Klf4, Klf7, E2f4, Klf6, Klf1, Klf8, Klf12, Egr1, Egr2, Zbtb17, Klf5, E2f1, Zfp281, Sp5, Zfp740, Egr3, Zfx, Zbtb1, Sall4
metacluster_1/pattern_3 # seqlets: 1427 SequenceContrib ScoresHyp_Contrib Scores	Irf1, Irf2, Stat1, Irf7, Prdm1, Stat2, Irf3, Irf9, Batf3
metacluster_1/pattern_4 # seqlets: 1221 SequenceContrib ScoresHyp_Contrib Scores	Nrf1
metacluster_1/pattern_5 # seqlets: 1174 SequenceContrib ScoresHyp_Contrib Scores	Nfyb, Nfyc, Nfya, Foxi1, Pbx3
metacluster_1/pattern_6 # seqlets: 848 SequenceContrib ScoresHyp_Contrib Scores	Runx1, Runx2, Runx3, Cbfb
metacluster_1/pattern_7 # seqlets: 758 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_8 # seqlets: 742 SequenceContrib ScoresHyp_Contrib Scores	Atf1, Atf7, Atf2, Creb1, Creb5, Jdp2, Crem, Mafb, Rxrb, Nfil3, Jun, Dbp, Tfec, Hlf, Tef
metacluster_1/pattern_9 # seqlets: 649 SequenceContrib ScoresHyp_Contrib Scores	Zfp143, Thap11, Tbx2
metacluster_1/pattern_10 # seqlets: 629 SequenceContrib ScoresHyp_Contrib Scores	Taf1, Yy1, Zfp42
metacluster_1/pattern_11 # seqlets: 610 SequenceContrib ScoresHyp_Contrib Scores	Usf1, Tfe3, Tfeb, Arntl, Usf2, Mitf, Bhlhe40, Srebf1, Clock, Arnt, Mlx, Npas2, Srebf2, Tcfl5, Creb3l2, Bhlhe41, Max, Mycn, Myc, Xbp1, Rarg
metacluster_1/pattern_12 # seqlets: 390 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_13 # seqlets: 390 SequenceContrib ScoresHyp_Contrib Scores	Jund, Batf, Fosb, Fos, Junb, Fosl2, Fosl1, Atf3, Bach2, Nfe2, Nfe2l2, Bach1, Mafk, Mafa
metacluster_1/pattern_14 # seqlets: 384 SequenceContrib ScoresHyp_Contrib Scores	Nfkb2, Nfkb1, Rela, Relb, Rel
metacluster_1/pattern_15 # seqlets: 343 SequenceContrib ScoresHyp_Contrib Scores	Rfx1, Rfx3, Rfx2, Rfx4, Rfx7, Rfx6
metacluster_1/pattern_16 # seqlets: 269 SequenceContrib ScoresHyp_Contrib Scores	Gata3, Gata1, Gata2, Gata4, Tal1, Mecom, Gata6
metacluster_1/pattern_17 # seqlets: 132 SequenceContrib ScoresHyp_Contrib Scores	Lef1, Tcf7l2, Tcf7l1, Tcf7, Tcf3
metacluster_1/pattern_18 # seqlets: 127 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_19 # seqlets: 109 SequenceContrib ScoresHyp_Contrib Scores	Zbtb33
metacluster_1/pattern_20 # seqlets: 106 SequenceContrib ScoresHyp_Contrib Scores	Nfia, Nfib, Nfic
metacluster_1/pattern_21 # seqlets: 105 SequenceContrib ScoresHyp_Contrib Scores
metacluster_1/pattern_22 # seqlets: 98 SequenceContrib ScoresHyp_Contrib Scores

Click here for Motifs by TF-MoDISco: #157

TF Name	Pattern(s)
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 1.19163e-14 metacluster_1/pattern_12 6.90414e-05
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 8.112589999999999e-08 metacluster_1/pattern_12 0.00489695
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00177964 metacluster_1/pattern_18 0.049253
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00177964 metacluster_1/pattern_7 0.0442261 metacluster_1/pattern_18 0.0183825
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00197479 metacluster_1/pattern_7 0.0495534
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00184655
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00177964 metacluster_1/pattern_18 0.049253
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0020678000000000003
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 3.4972100000000004e-05 metacluster_1/pattern_18 0.0183825
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00194791
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000620979
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00194791
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0121596 metacluster_1/pattern_18 0.0440798
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00172433 metacluster_1/pattern_18 0.049253
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00169055 metacluster_1/pattern_18 0.0374606
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012384
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.015558
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00164815
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00194791
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00197479
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00194791
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00216129 metacluster_1/pattern_3 0.00147549
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0322144 metacluster_1/pattern_18 0.05368969999999999
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00713031
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0408491 metacluster_1/pattern_18 0.0440798
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0178061
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0237626 metacluster_1/pattern_3 6.64035e-06
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.028145999999999997 metacluster_1/pattern_3 0.022150599999999996
Ets2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0284235
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.031112400000000002
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0408491
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00108278
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 3.29024e-06 metacluster_1/pattern_10 0.018902099999999998 metacluster_1/pattern_19 0.00460143
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 6.62387e-06
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 6.62387e-06 metacluster_1/pattern_19 0.0278197
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000307353 metacluster_1/pattern_19 0.031307999999999996
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00534185
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000307353
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000307353
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000350508
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.023196
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000446585
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0079119
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0240037
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0204718
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.006342800000000001
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0113119
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.013060200000000001
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0190587
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0190587
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.025800999999999998
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0297163
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0367342 metacluster_1/pattern_4 0.0209127 metacluster_1/pattern_19 0.0441958
Zbtb1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0464527
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0561155
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_3 1.06201e-14
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00186309
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_3 2.33491e-05
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_3 5.07321e-05
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000184113
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000733015
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00123095
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00198484
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00728942
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 9.29806e-06
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_5 5.45173e-13
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_5 1.06659e-11
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_5 5.82256e-10
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.38151e-06
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_5 3.16922e-06
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00060075
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0078529
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00190161
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00378395
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.026628700000000005 metacluster_1/pattern_11 0.021458500000000002
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00106851 metacluster_1/pattern_11 0.023796
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00124862 metacluster_1/pattern_11 0.054304899999999996
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00205641 metacluster_1/pattern_11 0.052365499999999995
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000628739
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00602312 metacluster_1/pattern_11 0.0358208 metacluster_1/pattern_13 3.77349e-06
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00602312
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0225033 metacluster_1/pattern_13 0.0593726
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0228524
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.030807599999999997
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.03434980000000001 metacluster_1/pattern_13 0.047850300000000005
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_8 0.03434980000000001 metacluster_1/pattern_11 0.0369053
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_8 0.039260699999999996 metacluster_1/pattern_11 0.00161745
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.041936 metacluster_1/pattern_11 0.023496200000000002
Tef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0486921
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_9 2.5175100000000003e-21
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_9 2.5175100000000003e-21
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_9 1.91558e-13
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_10 2.71664e-06
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_10 3.929509999999999e-06
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_10 0.018902099999999998
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00928484
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0016954999999999997
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00034199699999999997
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00931375
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00871001
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0008571210000000001
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00669227
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.029196499999999997
Clock	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0234441
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_11 0.05950830000000001
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0109767
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00353966
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00382226
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00750639
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0234441
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0151535
Max	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0222577
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_11 0.023796
Myc	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0369053
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0551668
Rarg	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0551668
Jund	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00224014
Batf	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00671681
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00010441299999999999
Fos	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00016893599999999998
Junb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0113558
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000527208
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.032144900000000004
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00022366400000000002
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00436624
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00635934
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00671681
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00811629
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0586818
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0441625
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_14 3.35488e-05
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_14 3.35488e-05
Rela	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000295991
Relb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00107875
Rel	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00396571
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_15 8.18746e-08
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0187509
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_15 1.8779699999999997e-07
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_15 7.963930000000001e-05
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00723346
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0278685
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.04399190000000001
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00242891
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00242891
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0119892
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0132484
Mecom	Pattern Name Modisco Significance metacluster_1/pattern_16 0.028206799999999997
Gata6	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0305278
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_17 2.22035e-06
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00507919 metacluster_1/pattern_21 0.0176945
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00027949
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00778413
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00010319
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_19 2.43479e-05
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_20 1.39499e-06
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_20 5.3986099999999995e-05
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_20 0.030813599999999997

display_paiwise_pattern_comparison(data_name, modisco_root, homer_root)

Number of CISBP TFs obtained by TF-MoDISco and Homer

Shared TFs between TF-MoDISco and Homer: #70

TF Name	Modisco	Homer
Ctcf	Pattern Name Modisco Significance metacluster_1/pattern_0 1.19163e-14 metacluster_1/pattern_12 6.90414e-05	Pattern Name Homer Significance motif1.motif 0.000341735
Egr1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0240037	Pattern Name Homer Significance motif3.motif 0.014518000000000001
Spic	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0408491	Pattern Name Homer Significance motif2.motif 0.0295697
Elf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00713031	Pattern Name Homer Significance motif2.motif 0.00168793
Ehf	Pattern Name Modisco Significance metacluster_1/pattern_1 0.015558	Pattern Name Homer Significance motif2.motif 0.0295697
Thap11	Pattern Name Modisco Significance metacluster_1/pattern_9 2.5175100000000003e-21	Pattern Name Homer Significance motif5.motif 1.50425e-05
Klf8	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000446585	Pattern Name Homer Significance motif3.motif 0.000597242
Klf4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00534185	Pattern Name Homer Significance motif3.motif 0.0397035
Runx2	Pattern Name Modisco Significance metacluster_1/pattern_6 0.0078529	Pattern Name Homer Significance motif4.motif 0.00510904
Gabpa	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00184655	Pattern Name Homer Significance motif2.motif 0.000595964
Elf3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0322144 metacluster_1/pattern_18 0.05368969999999999	Pattern Name Homer Significance motif2.motif 0.0233847
Relb	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00107875	Pattern Name Homer Significance motif15.motif 0.00312846
Elk1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00197479 metacluster_1/pattern_7 0.0495534	Pattern Name Homer Significance motif2.motif 0.000259991
Irf9	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00198484	Pattern Name Homer Significance motif14.motif 0.000234712
Klf3	Pattern Name Modisco Significance metacluster_1/pattern_2 6.62387e-06	Pattern Name Homer Significance motif3.motif 0.000160957
Etv1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00197479	Pattern Name Homer Significance motif2.motif 0.00024212900000000003
Fli1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00177964 metacluster_1/pattern_18 0.049253	Pattern Name Homer Significance motif2.motif 0.000225761
Spib	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00216129 metacluster_1/pattern_3 0.00147549	Pattern Name Homer Significance motif2.motif 0.0354976
Etv3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00194791	Pattern Name Homer Significance motif2.motif 0.000225761
Elk4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0020678000000000003	Pattern Name Homer Significance motif2.motif 0.000225761
Sp2	Pattern Name Modisco Significance metacluster_1/pattern_2 3.29024e-06 metacluster_1/pattern_10 0.018902099999999998 metacluster_1/pattern_19 0.00460143	Pattern Name Homer Significance motif3.motif 0.00019024
Sp4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.00108278	Pattern Name Homer Significance motif3.motif 0.0343484
Cbfb	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00378395	Pattern Name Homer Significance motif4.motif 0.00510904
Sp3	Pattern Name Modisco Significance metacluster_1/pattern_2 6.62387e-06 metacluster_1/pattern_19 0.0278197	Pattern Name Homer Significance motif3.motif 0.000214246
Etv5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.000620979	Pattern Name Homer Significance motif2.motif 1.8448400000000002e-06
Etv6	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00169055 metacluster_1/pattern_18 0.0374606	Pattern Name Homer Significance motif2.motif 0.00506877
Spi1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00172433 metacluster_1/pattern_18 0.049253	Pattern Name Homer Significance motif2.motif 0.053543499999999994
Elf5	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0408491 metacluster_1/pattern_18 0.0440798	Pattern Name Homer Significance motif2.motif 0.0295697
Elf1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0012384	Pattern Name Homer Significance motif2.motif 0.00288736
Sp1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000307353 metacluster_1/pattern_19 0.031307999999999996	Pattern Name Homer Significance motif3.motif 0.011529000000000001
Egr2	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0204718	Pattern Name Homer Significance motif3.motif 0.05628330000000001
Nfyc	Pattern Name Modisco Significance metacluster_1/pattern_5 1.06659e-11	Pattern Name Homer Significance motif7.motif 2.1905700000000003e-05
Klf12	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0079119	Pattern Name Homer Significance motif3.motif 0.00919205
Tbx2	Pattern Name Modisco Significance metacluster_1/pattern_9 1.91558e-13	Pattern Name Homer Significance motif5.motif 0.000131466
Yy1	Pattern Name Modisco Significance metacluster_1/pattern_10 3.929509999999999e-06	Pattern Name Homer Significance motif13.motif 7.094189999999999e-05
Rel	Pattern Name Modisco Significance metacluster_1/pattern_14 0.00396571	Pattern Name Homer Significance motif15.motif 0.0336286
Etv4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00194791	Pattern Name Homer Significance motif2.motif 0.00177985
Irf2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00186309	Pattern Name Homer Significance motif14.motif 0.0312127
Nrf1	Pattern Name Modisco Significance metacluster_1/pattern_4 9.29806e-06	Pattern Name Homer Significance motif8.motif 6.988209999999999e-07
Taf1	Pattern Name Modisco Significance metacluster_1/pattern_10 2.71664e-06	Pattern Name Homer Significance motif13.motif 0.017569799999999997
E2f4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000307353	Pattern Name Homer Significance motif3.motif 0.000597242
Spdef	Pattern Name Modisco Significance metacluster_1/pattern_1 0.031112400000000002	Pattern Name Homer Significance motif2.motif 0.0313682
Runx1	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00060075	Pattern Name Homer Significance motif4.motif 0.019209999999999998
Zfp42	Pattern Name Modisco Significance metacluster_1/pattern_10 0.018902099999999998	Pattern Name Homer Significance motif13.motif 0.00533933
Zfx	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0367342 metacluster_1/pattern_4 0.0209127 metacluster_1/pattern_19 0.0441958	Pattern Name Homer Significance motif3.motif 0.0393506
Klf7	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000307353	Pattern Name Homer Significance motif3.motif 0.000312352
Klf5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0113119	Pattern Name Homer Significance motif3.motif 0.0118539
Prdm1	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000184113	Pattern Name Homer Significance motif14.motif 0.0188996
Runx3	Pattern Name Modisco Significance metacluster_1/pattern_6 0.00190161	Pattern Name Homer Significance motif4.motif 0.0224315
Elk3	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00194791	Pattern Name Homer Significance motif2.motif 0.000225761
Klf1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.023196	Pattern Name Homer Significance motif3.motif 0.0262839
Elf2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0121596 metacluster_1/pattern_18 0.0440798	Pattern Name Homer Significance motif2.motif 0.015178799999999998
Nfyb	Pattern Name Modisco Significance metacluster_1/pattern_5 5.45173e-13	Pattern Name Homer Significance motif7.motif 1.16284e-06
Nfkb2	Pattern Name Modisco Significance metacluster_1/pattern_14 3.35488e-05	Pattern Name Homer Significance motif15.motif 0.00445137
Zfp143	Pattern Name Modisco Significance metacluster_1/pattern_9 2.5175100000000003e-21	Pattern Name Homer Significance motif5.motif 3.9873299999999997e-05
Ctcfl	Pattern Name Modisco Significance metacluster_1/pattern_0 8.112589999999999e-08 metacluster_1/pattern_12 0.00489695	Pattern Name Homer Significance motif1.motif 0.000630977
XP_911724.4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00194791	Pattern Name Homer Significance motif2.motif 0.000225761
Nfya	Pattern Name Modisco Significance metacluster_1/pattern_5 5.82256e-10	Pattern Name Homer Significance motif7.motif 1.03569e-05
Nfkb1	Pattern Name Modisco Significance metacluster_1/pattern_14 3.35488e-05	Pattern Name Homer Significance motif15.motif 0.00248026
Foxi1	Pattern Name Modisco Significance metacluster_1/pattern_5 2.38151e-06	Pattern Name Homer Significance motif7.motif 0.00159124
Fev	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00164815	Pattern Name Homer Significance motif2.motif 0.00140577
Klf6	Pattern Name Modisco Significance metacluster_1/pattern_2 0.000350508	Pattern Name Homer Significance motif3.motif 0.000597242
Pbx3	Pattern Name Modisco Significance metacluster_1/pattern_5 3.16922e-06	Pattern Name Homer Significance motif7.motif 0.00114967
Rela	Pattern Name Modisco Significance metacluster_1/pattern_14 0.000295991	Pattern Name Homer Significance motif15.motif 0.00445137
Etv2	Pattern Name Modisco Significance metacluster_1/pattern_1 3.4972100000000004e-05 metacluster_1/pattern_18 0.0183825	Pattern Name Homer Significance motif2.motif 0.00037755199999999997
Zbtb33	Pattern Name Modisco Significance metacluster_1/pattern_19 2.43479e-05	Pattern Name Homer Significance motif11.motif 5.39892e-05
Ets1	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00177964 metacluster_1/pattern_7 0.0442261 metacluster_1/pattern_18 0.0183825	Pattern Name Homer Significance motif2.motif 0.000225761
Irf7	Pattern Name Modisco Significance metacluster_1/pattern_3 5.07321e-05	Pattern Name Homer Significance motif14.motif 0.000912241
Irf1	Pattern Name Modisco Significance metacluster_1/pattern_3 1.06201e-14	Pattern Name Homer Significance motif14.motif 0.012664
Erg	Pattern Name Modisco Significance metacluster_1/pattern_1 0.00177964 metacluster_1/pattern_18 0.049253	Pattern Name Homer Significance motif2.motif 0.000225761

Unique TF-MoDISco TFs: #87

TF Name	Modisco	Homer
Srebf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00382226	Absent
Bhlhe40	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00669227	Absent
Rfx1	Pattern Name Modisco Significance metacluster_1/pattern_15 8.18746e-08	Absent
Nfil3	Pattern Name Modisco Significance metacluster_1/pattern_8 0.030807599999999997	Absent
Usf2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00871001	Absent
Nfia	Pattern Name Modisco Significance metacluster_1/pattern_20 1.39499e-06	Absent
Creb3l2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0234441	Absent
Nfe2l2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00671681	Absent
Gata4	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0119892	Absent
Tef	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0486921	Absent
Mitf	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0008571210000000001	Absent
Mafb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0225033 metacluster_1/pattern_13 0.0593726	Absent
Zfp740	Pattern Name Modisco Significance metacluster_1/pattern_2 0.025800999999999998	Absent
Zfp281	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0190587	Absent
Nfib	Pattern Name Modisco Significance metacluster_1/pattern_20 5.3986099999999995e-05	Absent
Mecom	Pattern Name Modisco Significance metacluster_1/pattern_16 0.028206799999999997	Absent
Zbtb1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0464527	Absent
Rfx3	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0187509	Absent
Sall4	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0561155	Absent
Egr3	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0297163	Absent
Tfe3	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0016954999999999997	Absent
Clock	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0234441	Absent
Creb1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00205641 metacluster_1/pattern_11 0.052365499999999995	Absent
Hlf	Pattern Name Modisco Significance metacluster_1/pattern_8 0.041936 metacluster_1/pattern_11 0.023496200000000002	Absent
Gata3	Pattern Name Modisco Significance metacluster_1/pattern_16 0.04399190000000001	Absent
Arnt	Pattern Name Modisco Significance metacluster_1/pattern_11 0.05950830000000001	Absent
Rfx6	Pattern Name Modisco Significance metacluster_1/pattern_15 0.0278685	Absent
Stat4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0178061	Absent
Nfic	Pattern Name Modisco Significance metacluster_1/pattern_20 0.030813599999999997	Absent
Rfx4	Pattern Name Modisco Significance metacluster_1/pattern_15 7.963930000000001e-05	Absent
Tal1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0132484	Absent
Rarg	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0551668	Absent
Tcfl5	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00750639	Absent
Fosb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00010441299999999999	Absent
Npas2	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00353966	Absent
Mycn	Pattern Name Modisco Significance metacluster_1/pattern_11 0.023796	Absent
Gata2	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00242891	Absent
Bach1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00811629	Absent
Usf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00928484	Absent
Creb5	Pattern Name Modisco Significance metacluster_1/pattern_8 0.000628739	Absent
Rxrb	Pattern Name Modisco Significance metacluster_1/pattern_8 0.0228524	Absent
Irf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00123095	Absent
Jund	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00224014	Absent
Atf3	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00022366400000000002	Absent
Gata1	Pattern Name Modisco Significance metacluster_1/pattern_16 0.00242891	Absent
Fos	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00016893599999999998	Absent
Tcf7	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00778413	Absent
Jdp2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00602312 metacluster_1/pattern_11 0.0358208 metacluster_1/pattern_13 3.77349e-06	Absent
Jun	Pattern Name Modisco Significance metacluster_1/pattern_8 0.03434980000000001 metacluster_1/pattern_13 0.047850300000000005	Absent
Atf1	Pattern Name Modisco Significance metacluster_1/pattern_8 0.026628700000000005 metacluster_1/pattern_11 0.021458500000000002	Absent
Tcf7l2	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00507919 metacluster_1/pattern_21 0.0176945	Absent
Bhlhe41	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0151535	Absent
Batf	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00671681	Absent
Batf3	Pattern Name Modisco Significance metacluster_1/pattern_3 0.00728942	Absent
Sp5	Pattern Name Modisco Significance metacluster_1/pattern_2 0.0190587	Absent
Ets2	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0284235	Absent
Tfec	Pattern Name Modisco Significance metacluster_1/pattern_8 0.039260699999999996 metacluster_1/pattern_11 0.00161745	Absent
Atf7	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00106851 metacluster_1/pattern_11 0.023796	Absent
Atf2	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00124862 metacluster_1/pattern_11 0.054304899999999996	Absent
Mafk	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0586818	Absent
Lef1	Pattern Name Modisco Significance metacluster_1/pattern_17 2.22035e-06	Absent
Tcf3	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00010319	Absent
Arntl	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00931375	Absent
Stat2	Pattern Name Modisco Significance metacluster_1/pattern_3 0.000733015	Absent
Max	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0222577	Absent
Irf8	Pattern Name Modisco Significance metacluster_1/pattern_1 0.0237626 metacluster_1/pattern_3 6.64035e-06	Absent
Stat1	Pattern Name Modisco Significance metacluster_1/pattern_3 2.33491e-05	Absent
Dbp	Pattern Name Modisco Significance metacluster_1/pattern_8 0.03434980000000001 metacluster_1/pattern_11 0.0369053	Absent
Fosl2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.000527208	Absent
Gata6	Pattern Name Modisco Significance metacluster_1/pattern_16 0.0305278	Absent
Zbtb17	Pattern Name Modisco Significance metacluster_1/pattern_2 0.006342800000000001	Absent
Mafa	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0441625	Absent
Fosl1	Pattern Name Modisco Significance metacluster_1/pattern_13 0.032144900000000004	Absent
Srebf1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.029196499999999997	Absent
Rfx7	Pattern Name Modisco Significance metacluster_1/pattern_15 0.00723346	Absent
Irf4	Pattern Name Modisco Significance metacluster_1/pattern_1 0.028145999999999997 metacluster_1/pattern_3 0.022150599999999996	Absent
Junb	Pattern Name Modisco Significance metacluster_1/pattern_13 0.0113558	Absent
Tfeb	Pattern Name Modisco Significance metacluster_1/pattern_11 0.00034199699999999997	Absent
Nfe2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00635934	Absent
Bach2	Pattern Name Modisco Significance metacluster_1/pattern_13 0.00436624	Absent
Myc	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0369053	Absent
Rfx2	Pattern Name Modisco Significance metacluster_1/pattern_15 1.8779699999999997e-07	Absent
Tcf7l1	Pattern Name Modisco Significance metacluster_1/pattern_17 0.00027949	Absent
E2f1	Pattern Name Modisco Significance metacluster_1/pattern_2 0.013060200000000001	Absent
Mlx	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0109767	Absent
Xbp1	Pattern Name Modisco Significance metacluster_1/pattern_11 0.0551668	Absent
Crem	Pattern Name Modisco Significance metacluster_1/pattern_8 0.00602312	Absent

Unique Homer TFs: #0

TF Name	Modisco	Homer