# Parameters
data_name = "Ets2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Ets2: #6
| Cell type | Modisco | Homer |
|---|---|---|
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0236976 |
Significance: 0.054945100000000004 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.022872 |
Significance: 0.054265499999999994 |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.030644900000000003 |
Significance: 0.0273718 |
| 416B_MP;CD34+;D;GEO |
Significance: 0.0170516 |
Significance: 0.0439615 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.026312000000000002 |
Significance: 0.0515709 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.022193 |
Significance: 0.0543457 |
Unique Cell types only TF-MoDISco finds Ets2: #68
| Cell type | Modisco | Homer |
|---|---|---|
| proB;A;CL |
Significance: 0.0142324 | Absent |
| preB;A;CL |
Significance: 0.0414596 | Absent |
| matureB;A;CL |
Significance: 0.0429038 | Absent |
| GC_B;A;CL |
Significance: 0.0513383 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.023244 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.0332849 | Absent |
| Mast;A;CL |
Significance: 0.0441187 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.00356581 | Absent |
| Tfh;A;CL |
Significance: 0.0289007 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.033566399999999996 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.016160499999999998 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.026835200000000003 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.031191900000000005 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.043475099999999996 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0506171 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.0364898 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.025258900000000004 | Absent |
| DP;A;CL |
Significance: 0.035203899999999996 | Absent |
| DP3a;A;CL |
Significance: 0.015902799999999998 | Absent |
| DP3b;A;CL |
Significance: 0.0201952 | Absent |
| ES;MEF;A;CL |
Significance: 0.039762599999999995 | Absent |
| Adipose;A;CL |
Significance: 0.021285299999999997 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0306348 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.010816500000000001 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.0384935 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.058164999999999994 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0247564 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.028755799999999998 | Absent |
| ILC1;A;CL |
Significance: 0.0314111 | Absent |
| ILC2;A;CL |
Significance: 0.018305099999999998 | Absent |
| Th2_nippo;A;CL |
Significance: 0.0284055 | Absent |
| wCH12_drug;A;CL |
Significance: 0.04289 | Absent |
| CLP;A;CL |
Significance: 0.0216852 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.021913 | Absent |
| ILC1;A;GEO |
Significance: 0.028460500000000003 | Absent |
| ILC2;A;GEO |
Significance: 0.0541135 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.045338699999999996 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.0257807 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.05260940000000001 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.0223856 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.032926300000000006 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.0455224 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0289697 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.04308069999999999 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.029629400000000004 | Absent |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0548004 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.032118799999999996 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0249976 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0226753 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.027406299999999998 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0313005 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0241887 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.032035900000000006 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.022534000000000002 | Absent |
| iNKT;A;GEO |
Significance: 0.0223162 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.0224174 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 0.0417296 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.028457999999999997 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.0435597 | Absent |
| pCMP;A;CL |
Significance: 0.045679000000000004 | Absent |
| DC;A;En |
Significance: 0.0499362 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.055673 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0363093 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.0284235 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.028952600000000002 | Absent |
| Heart;P0;D;En |
Significance: 0.023005599999999998 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.0239612 | Absent |
| apTreg;8wk;D;En |
Significance: 0.0467125 | Absent |
Unique Cell types only Homer finds Ets2: #3
| Cell type | Modisco | Homer |
|---|---|---|
| ISP;A;CL | Absent |
Significance: 0.048825400000000005 |
| ILC2+IL33+IL25;A;GEO | Absent |
Significance: 0.049632800000000005 |
| 416B;HMTP_SPNSN;CD34+;D;En | Absent |
Significance: 0.00338799 |
