# Parameters
data_name = "Tbx21"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:41:40,481 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Tbx21: Motif: M09428_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tbx21: #2

Cell type	Modisco	Homer
T_LCMV;CD8+;D8;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.00281722	Pattern: motif19.motif Significance: 0.0115984
NK_SPLND;A;CL	Pattern: metacluster_0/pattern_15 Significance: 0.00546334	Pattern: motif14.motif Significance: 0.026853199999999997

Unique Cell types only TF-MoDISco finds Tbx21: #2

Cell type	Modisco	Homer
TEff_SPLND;CD8+;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 0.00104642	Absent
ePyramidal_NRN;A;GEO	Pattern: metacluster_1/pattern_15 Significance: 0.00529745	Absent

Unique Cell types only Homer finds Tbx21: #3

Cell type	Modisco	Homer
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO	Absent	Pattern: motif8.motif Significance: 0.00802084
Spleen;8wks;D;En	Absent	Pattern: motif18.motif Significance: 0.0599196
ThMS_MEC;Aire++;A;GEO	Absent	Pattern: motif12.motif Significance: 0.0494065