# Parameters
data_name = "Egr3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Egr3: #14
| Cell type | Modisco | Homer |
|---|---|---|
| BRN;PTMN;A;CL |
Significance: 0.025705000000000002 |
Significance: 0.039375400000000005 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00578408 |
Significance: 0.0383895 |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.031292900000000005 |
Significance: 0.036318 |
| Adipose;D;En |
Significance: 0.0211113 |
Significance: 3.1721100000000004e-05 |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.056259699999999996 |
Significance: 0.0550493 |
| ePyramidal_NRN;A;GEO |
Significance: 0.026361900000000004 |
Significance: 0.0576696 |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.039514999999999995 |
Significance: 0.022529 |
| eCortical_NRN;A;GEO |
Significance: 0.037069 |
Significance: 0.0581611 |
| WHL_BRN;8wks;D;GEO |
Significance: 0.033245699999999996 |
Significance: 0.055619100000000005 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.041955 |
Significance: 0.039475800000000005 |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.042711 |
Significance: 0.0521524 |
| KDNY;P0;D;En |
Significance: 0.0409379 |
Significance: 0.026510000000000002 |
| WHL_BRN;8wks;D;En |
Significance: 0.059513199999999995 |
Significance: 0.00194228 |
| wES;Telenchephalon;D;En |
Significance: 0.0566102 |
Significance: 0.038255199999999996 |
Unique Cell types only TF-MoDISco finds Egr3: #171
| Cell type | Modisco | Homer |
|---|---|---|
| naiveCD8;A;CL |
Significance: 0.051816499999999995 | Absent |
| memT;CD4+;A;CL |
Significance: 0.022762900000000003 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0475605 | Absent |
| NK_SPLND;A;CL |
Significance: 0.0343667 | Absent |
| proB;A;CL |
Significance: 0.05713769999999999 | Absent |
| preB;A;CL |
Significance: 0.043147500000000005 | Absent |
| immatureB;A;CL |
Significance: 0.0558078 | Absent |
| matureB;A;CL |
Significance: 0.0311499 | Absent |
| B1_B;A;CL |
Significance: 0.040417 | Absent |
| aB_LPS;A;CL |
Significance: 0.038108300000000005 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.0523486 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.040598300000000004 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.045913499999999996 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.0519865 | Absent |
| Mast;A;CL |
Significance: 0.0374867 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.0369624 | Absent |
| NTRPHL;A;CL |
Significance: 0.058297400000000006 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.0243576 | Absent |
| Tfh;A;CL |
Significance: 0.042894699999999994 | Absent |
| aNonTfh;A;CL |
Significance: 0.0466907 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.035981 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0346853 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.043356099999999995 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.0561394 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.049569800000000004 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0583384 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0457559 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.0432491 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.0516008 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0429811 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0434585 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.0326664 | Absent |
| DC_BMD;A;CL |
Significance: 0.0482837 | Absent |
| MCRPHG;A;CL |
Significance: 0.041667199999999995 | Absent |
| Erythroblast;A;CL |
Significance: 0.0508357 | Absent |
| ES;MEF;A;CL |
Significance: 0.0535351 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.0547629 | Absent |
| LNG;A;CL |
Significance: 0.0576697 | Absent |
| Adipose;A;CL |
Significance: 0.0423583 | Absent |
| Adrenal;A;CL |
Significance: 0.0365292 | Absent |
| testis;A;CL |
Significance: 0.011826799999999998 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.0426438 | Absent |
| STMCH;A;CL |
Significance: 0.011146799999999998 | Absent |
| PNCRS;A;CL |
Significance: 0.052444399999999995 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 0.0392164 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0413313 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.000317985 | Absent |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.0448555 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.0376291 | Absent |
| aB;CD180;A;CL |
Significance: 0.038423900000000004 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.0432025 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.058797300000000004 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.05404069999999999 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.041355300000000005 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0522664 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.0424999 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.035087400000000005 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.034087 | Absent |
| Th2_nippo;A;CL |
Significance: 0.05858680000000001 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.0467714 | Absent |
| wCH12_drug;A;CL |
Significance: 0.0576031 | Absent |
| ES;J1;A;CL |
Significance: 0.056105499999999996 | Absent |
| ES;E14;A;GEO |
Significance: 0.0545853 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.0264818 | Absent |
| ES;v6.5;A;GEO |
Significance: 0.05317569999999999 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.00641419 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0539814 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.0572841 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.05741419999999999 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.0541313 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.0359348 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0461531 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.025929 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.05372819999999999 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0307142 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.0514935 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.03186 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.054839 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0465967 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0522375 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.026678800000000003 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0410066 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0454277 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0428204 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.044663 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0499315 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.024902200000000003 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0320802 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0404282 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0414816 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0505288 | Absent |
| iNKT;A;GEO |
Significance: 0.0463284 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.0411851 | Absent |
| B_SPLND;A;GEO |
Significance: 0.051925400000000003 | Absent |
| preB_BMD;A;GEO |
Significance: 0.059066999999999995 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.04742419999999999 | Absent |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.0308611 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.0335937 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 0.0561139 | Absent |
| DC_pBMD;A;GEO |
Significance: 0.0540455 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.05342430000000001 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.051303499999999995 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0509344 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.059761 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.0530413 | Absent |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.0476827 | Absent |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.051563 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.050325199999999994 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.053031100000000005 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.05584730000000001 | Absent |
| NPC;G4;A;GEO |
Significance: 0.0235005 | Absent |
| NPC;Ch13;A;GEO |
Significance: 0.0428017 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.0141061 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.0286677 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.021525799999999998 | Absent |
| wES;GRM;E16.5;A;GEO |
Significance: 0.0575059 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.0468642 | Absent |
| Corticotrope;A;GEO |
Significance: 0.05149630000000001 | Absent |
| Melanotrope;A;GEO |
Significance: 0.0369305 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.0404982 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.014141899999999999 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.0327814 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.0123082 | Absent |
| pMeg;A;En |
Significance: 0.0454991 | Absent |
| EPP;A;En |
Significance: 0.0185958 | Absent |
| MegEP;A;CL |
Significance: 0.0509541 | Absent |
| pCMP;A;CL |
Significance: 0.0493738 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.0264147 | Absent |
| pGMP;A;En |
Significance: 0.0345784 | Absent |
| DC;A;En |
Significance: 0.033713400000000004 | Absent |
| ES;D0;D;GEO |
Significance: 0.022381 | Absent |
| LVR;8wks;D;GEO |
Significance: 0.0466198 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.045723 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0457082 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0507645 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.0297163 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.05417430000000001 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.0466816 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.022006099999999997 | Absent |
| ES;E14;D;En |
Significance: 0.0210972 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 0.0320388 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.027126099999999997 | Absent |
| KDNY;8wks;D;En |
Significance: 0.047541599999999996 | Absent |
| LVR;8wks;D;En |
Significance: 0.050055 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.0293719 | Absent |
| LVR;P0;D;En |
Significance: 0.0538114 | Absent |
| LNG;8wks;D;En |
Significance: 0.0481911 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.0526014 | Absent |
| Heart;P0;D;En |
Significance: 0.033965499999999996 | Absent |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.0414693 | Absent |
| RTN;D1;D;En |
Significance: 0.059870400000000004 | Absent |
| CRBLM;D;En |
Significance: 0.04862519999999999 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.0414346 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.036109300000000004 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.0470436 | Absent |
| Muller;P12;D;En |
Significance: 0.016904 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.058307000000000005 | Absent |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.055297000000000006 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.0465654 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.0476313 | Absent |
| LRG_INTSTN;8wks;D;En |
Significance: 0.0467037 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.035165300000000003 | Absent |
| Spleen;8wks;D;En |
Significance: 0.046383600000000004 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.053427699999999995 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.0558727 | Absent |
| AML;D;En |
Significance: 0.0362476 | Absent |
| CH12.LX;D;En |
Significance: 0.033127699999999996 | Absent |
| MEL;D;En |
Significance: 0.0306778 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.0345296 | Absent |
| NIH3T3;D;En |
Significance: 0.04686219999999999 | Absent |
| 3T3-L1;D;En |
Significance: 0.0328853 | Absent |
Unique Cell types only Homer finds Egr3: #3
| Cell type | Modisco | Homer |
|---|---|---|
| ILC1;A;CL | Absent |
Significance: 0.05961759999999999 |
| ILC3;A;GEO | Absent |
Significance: 0.0597044 |
| Treg;CD4+_CD25+;D;GEO | Absent |
Significance: 0.0414465 |
