# Parameters
data_name = "Tbx20"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False

from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:41:31,067 [WARNING] git-lfs not installed

homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.

display_comparative_cell_types(data_name, homer_matches, modisco_matches)

Tbx20: Motif: M00835_2.00

Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tbx20: #3

Cell type	Modisco	Homer
T_LCMV;CD8+;D8;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 3.94496e-05	Pattern: motif19.motif Significance: 0.00420382
NK_SPLND;A;CL	Pattern: metacluster_0/pattern_15 Significance: 3.94384e-05	Pattern: motif14.motif Significance: 0.0270622
Heart;P0;D;En	Pattern: metacluster_1/pattern_15 Significance: 8.14451e-05	Pattern: motif14.motif Significance: 0.00023730900000000003

Unique Cell types only TF-MoDISco finds Tbx20: #4

Cell type	Modisco	Homer
wES;5th_Rhmbmr;E8.5;A;GEO	Pattern: metacluster_0/pattern_8 Significance: 0.0584525 / Pattern: metacluster_0/pattern_27 Significance: 0.0126124	Absent
TEff_SPLND;CD8+;A;GEO	Pattern: metacluster_1/pattern_16 Significance: 9.38044e-05	Absent
BRN;PTMN;A;CL	Pattern: metacluster_1/pattern_15 Significance: 0.032563	Absent
ePyramidal_NRN;A;GEO	Pattern: metacluster_1/pattern_15 Significance: 0.00199224	Absent

Unique Cell types only Homer finds Tbx20: #4

Cell type	Modisco	Homer
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO	Absent	Pattern: motif8.motif Significance: 8.1541e-05
Heart;D;En	Absent	Pattern: motif17.motif Significance: 0.030474
wES;Md_BRN;E14.4;D;En	Absent	Pattern: motif17.motif Significance: 0.0470078
ENDRM_ESD;A;GEO	Absent	Pattern: motif15.motif Significance: 0.042831