In [1]:
# Parameters
data_name = "Neurog1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:22:11,957 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Neurog1: Motif: M01748_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Neurog1: #20

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0287106

Pattern: motif5.motif

Significance: 0.00134148

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00659028

/

Pattern: metacluster_0/pattern_7

Significance: 0.046842699999999994

Pattern: motif12.motif

Significance: 0.026376099999999996

wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.011111

Pattern: motif6.motif

Significance: 0.0222502

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0555462

Pattern: motif11.motif

Significance: 0.048824900000000004

BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.00537127

Pattern: motif15.motif

Significance: 0.00211887

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0317887

Pattern: motif7.motif

Significance: 0.012240700000000002

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.00485971

Pattern: motif7.motif

Significance: 0.0010107

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00872596

Pattern: motif2.motif

Significance: 0.00028462

ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00115398

Pattern: motif4.motif

Significance: 0.000545065

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.000553104

Pattern: motif4.motif

Significance: 0.000142034

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.00697041

Pattern: motif15.motif

Significance: 0.0146398

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00417171

Pattern: motif4.motif

Significance: 0.00423983

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.00579267

Pattern: motif2.motif

Significance: 0.012213600000000002

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.0104446

Pattern: motif13.motif

Significance: 0.00110076

3T3-L1;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0457584

Pattern: motif15.motif

Significance: 0.056063699999999994

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00530144

Pattern: motif11.motif

Significance: 0.00115853

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00790221

/

Pattern: metacluster_1/pattern_15

Significance: 0.019459

Pattern: motif7.motif

Significance: 0.000252747

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00796469

Pattern: motif10.motif

Significance: 0.0177528

WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00228462

Pattern: motif2.motif

Significance: 0.0202894

wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00112327

Pattern: motif4.motif

Significance: 0.016491099999999998

Unique Cell types only TF-MoDISco finds Neurog1: #29

Cell typeModiscoHomer
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00692029

Absent
NIH3T3;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0267447

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.0152651

Absent
MN1;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.0448379

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00904617

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00676022

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00751894

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0473402

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.0595439

/

Pattern: metacluster_0/pattern_22

Significance: 0.00208825

/

Pattern: metacluster_0/pattern_24

Significance: 0.0133456

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0240777

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00711641

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0134725

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0410963

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00559117

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.017987700000000002

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.017681

Absent
Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.05608330000000001

Absent
BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.00834489

Absent
NIH3T3_FBROBLST;D;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0401779

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.0302366

Absent
3T3-L1;FBRBLST;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0503841

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0114589

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0125059

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.015713

Absent
CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.00268461

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.023952200000000003

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0227358

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.00930936

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0153914

Absent
Unique Cell types only Homer finds Neurog1: #1

Cell typeModiscoHomer
wES;FaceP;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.005372