In [1]:
# Parameters
data_name = "Dlx3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:01:22,389 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Dlx3: Motif: M00387_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Dlx3: #20

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0397983

Pattern: motif4.motif

Significance: 0.058388499999999996

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0151697

Pattern: motif3.motif

Significance: 0.028729

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0322059

Pattern: motif14.motif

Significance: 0.0578678

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.0155023

Pattern: motif3.motif

Significance: 0.0568149

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.035368300000000005

Pattern: motif9.motif

Significance: 0.00719168

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0515254

Pattern: motif3.motif

Significance: 0.0263833

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0307293

Pattern: motif6.motif

Significance: 0.0101182

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.029169099999999996

Pattern: motif2.motif

Significance: 0.0408781

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0233885

Pattern: motif3.motif

Significance: 0.041681199999999995

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.035117699999999995

Pattern: motif3.motif

Significance: 0.0156438

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.051073

Pattern: motif13.motif

Significance: 0.015441899999999998

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0575297

Pattern: motif4.motif

Significance: 0.0126161

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.028302099999999997

Pattern: motif2.motif

Significance: 0.0579871

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0370793

Pattern: motif2.motif

Significance: 0.0526658

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.057582100000000004

Pattern: motif10.motif

Significance: 0.0593945

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0261171

Pattern: motif14.motif

Significance: 0.059194000000000004

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.017357400000000002

Pattern: motif13.motif

Significance: 0.057082400000000005

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.051546400000000006

Pattern: motif6.motif

Significance: 0.014389500000000001

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0562111

Pattern: motif16.motif

Significance: 0.0150715

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.0382423

Pattern: motif2.motif

Significance: 0.012446299999999999

Unique Cell types only TF-MoDISco finds Dlx3: #11

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.03938130000000001

/

Pattern: metacluster_0/pattern_25

Significance: 0.0492119

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0197213

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0505839

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_18

Significance: 0.026329200000000004

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.007747199999999999

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.054088300000000006

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0267834

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0359265

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0478436

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.00746365

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0366739

Absent
Unique Cell types only Homer finds Dlx3: #3

Cell typeModiscoHomer
CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0454678

BRN;OLFTRY_BLB;A;CLAbsent

Pattern: motif7.motif

Significance: 0.0573928

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0124966