In [1]:
# Parameters
data_name = "Foxc1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:08:22,408 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Foxc1: Motif: M03059_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Foxc1: #14

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.015155200000000002

Pattern: motif9.motif

Significance: 0.0597154

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.010637100000000002

Pattern: motif15.motif

Significance: 0.0544118

LVR;P0;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.00922496

/

Pattern: metacluster_1/pattern_18

Significance: 0.033062400000000006

Pattern: motif16.motif

Significance: 0.0425904

LNG;8wks;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.00734251

Pattern: motif5.motif

Significance: 0.03560719999999999

LVR;8wks;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.0148056

/

Pattern: metacluster_0/pattern_13

Significance: 0.0179507

/

Pattern: metacluster_0/pattern_14

Significance: 0.0588259

Pattern: motif7.motif

Significance: 0.031270599999999996

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00612576

Pattern: motif15.motif

Significance: 0.014619700000000001

LNG;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0046488

Pattern: motif5.motif

Significance: 0.012049200000000001

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0122505

Pattern: motif11.motif

Significance: 0.057472800000000004

STMCH;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0134584

/

Pattern: metacluster_1/pattern_10

Significance: 0.042187999999999996

Pattern: motif3.motif

Significance: 0.00605718

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0047372

Pattern: motif4.motif

Significance: 0.053079999999999995

LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0132059

Pattern: motif6.motif

Significance: 0.023687200000000002

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.011935600000000001

Pattern: motif5.motif

Significance: 0.033660199999999994

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0120314

Pattern: motif15.motif

Significance: 0.0516519

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0107071

Pattern: motif16.motif

Significance: 0.05499640000000001

Unique Cell types only TF-MoDISco finds Foxc1: #19

Cell typeModiscoHomer
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_24

Significance: 0.00579652

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_23

Significance: 0.00645568

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.00987048

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0432151

Absent
LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.032867

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.00786624

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.03754930000000001

Absent
wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.0470043

/

Pattern: metacluster_0/pattern_19

Significance: 0.0198999

Absent
Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_14

Significance: 0.0175649

Absent
3134_mammaryADNCRCNM;D;GE

Pattern: metacluster_1/pattern_18

Significance: 0.00565731

/

Pattern: metacluster_1/pattern_21

Significance: 0.0469786

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0328725

Absent
wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.029316000000000002

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_9

Significance: 0.035632

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.0106625

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_7

Significance: 0.059002

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.0369983

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_23

Significance: 0.00857837

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00695478

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00602413

Absent
No Cell types only Homer finds Foxc1