In [1]:
# Parameters
data_name = "Neurog2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:22:18,115 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Neurog2: Motif: M08758_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Neurog2: #25

Cell typeModiscoHomer
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 5.61045e-05

Pattern: motif15.motif

Significance: 0.0443791

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.0193255

Pattern: motif10.motif

Significance: 0.030358299999999998

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.022235599999999998

Pattern: motif9.motif

Significance: 0.010974

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.03453869999999999

Pattern: motif11.motif

Significance: 0.00392936

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0191429

Pattern: motif9.motif

Significance: 0.0172011

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0312153

Pattern: motif11.motif

Significance: 0.018778200000000002

ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 8.41422e-06

Pattern: motif4.motif

Significance: 0.0411712

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.00021360299999999998

Pattern: motif4.motif

Significance: 0.00232847

BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 3.17911e-05

Pattern: motif15.motif

Significance: 0.00223888

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 1.59151e-05

Pattern: motif7.motif

Significance: 0.000193322

BRN;CRBLM;A;CL

Pattern: metacluster_0/pattern_7

Significance: 0.000315556

Pattern: motif7.motif

Significance: 0.00698707

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 7.73185e-05

/

Pattern: metacluster_1/pattern_10

Significance: 0.0036819

Pattern: motif2.motif

Significance: 9.21903e-05

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 1.79163e-06

Pattern: motif13.motif

Significance: 0.00757158

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 1.47484e-06

Pattern: motif2.motif

Significance: 4.1935199999999995e-06

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 2.64928e-05

Pattern: motif16.motif

Significance: 0.010966799999999999

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 1.28534e-05

Pattern: motif14.motif

Significance: 0.00631205

CRBLM;D;En

Pattern: metacluster_1/pattern_1

Significance: 6.0892e-05

Pattern: motif2.motif

Significance: 0.00871669

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00020271299999999998

Pattern: motif4.motif

Significance: 0.00269051

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 1.04067e-08

Pattern: motif11.motif

Significance: 1.1934900000000002e-07

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.00010771399999999999

/

Pattern: metacluster_1/pattern_15

Significance: 0.00154614

Pattern: motif7.motif

Significance: 3.098e-05

Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 1.3843900000000001e-05

Pattern: motif8.motif

Significance: 0.000629076

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00190359

Pattern: motif19.motif

Significance: 0.0117685

Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 1.5593399999999999e-06

Pattern: motif15.motif

Significance: 0.00048278599999999997

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0394226

/

Pattern: metacluster_1/pattern_6

Significance: 4.88359e-06

Pattern: motif10.motif

Significance: 0.00887092

WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 3.94488e-06

/

Pattern: metacluster_1/pattern_11

Significance: 0.0163973

Pattern: motif2.motif

Significance: 1.4712100000000001e-05

Unique Cell types only TF-MoDISco finds Neurog2: #33

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00854718

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0217041

Absent
proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.022481

Absent
preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.025961

Absent
plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0350596

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_12

Significance: 0.00526799

Absent
MN1;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.00854601

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 5.95668e-06

Absent
BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00030141

Absent
CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 1.65773e-05

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0160129

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.013971

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.000562303

/

Pattern: metacluster_0/pattern_22

Significance: 0.00246937

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.010460899999999999

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.0482843

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00148117

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 5.6531400000000006e-05

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00330387

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.000146477

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0036555

Absent
NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0102762

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 9.196899999999999e-07

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.012601799999999998

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.017944799999999997

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.028702699999999998

Absent
Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.040332400000000004

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0189297

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.021912099999999997

Absent
RTN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 6.85702e-06

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00103985

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0371309

/

Pattern: metacluster_0/pattern_12

Significance: 0.000110768

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00474469

Absent
wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 1.4596500000000002e-05

Absent
Unique Cell types only Homer finds Neurog2: #5

Cell typeModiscoHomer
wES;limb;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.00117284

wES;FaceP;E14.5;D;EnAbsent

Pattern: motif5.motif

Significance: 0.005372

wES;LNG;E14.5;D;EnAbsent

Pattern: motif13.motif

Significance: 0.056092499999999997

LNG;P0;D;EnAbsent

Pattern: motif18.motif

Significance: 0.057112800000000005

NPC;Ch13;A;GEOAbsent

Pattern: motif13.motif

Significance: 0.03743030000000001