# Parameters
data_name = "Bach2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Bach2: #102
| Cell type | Modisco | Homer |
|---|---|---|
| memT;CD4+;A;CL |
Significance: 0.00715276 |
Significance: 0.0262618 |
| Th17;CD4+;A;CL |
Significance: 0.00032967 |
Significance: 0.00326461 |
| BSPHL;A;CL |
Significance: 9.84999e-05 |
Significance: 0.00045929699999999995 |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 9.48698e-07 |
Significance: 0.00324948 |
| NTRPHL;A;CL |
Significance: 3.1446300000000004e-05 |
Significance: 0.010042200000000001 |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00134094 |
Significance: 0.010835899999999999 |
| DC_BMD;A;CL |
Significance: 0.000817247 |
Significance: 9.3446e-05 |
| MCRPHG;A;CL |
Significance: 0.00518615 |
Significance: 0.000957647 |
| Erythroblast;A;CL |
Significance: 8.83733e-09 |
Significance: 1.4690399999999999e-06 |
| ES;MEF;A;CL |
Significance: 0.00456062 |
Significance: 0.00476445 |
| SML_INTSTN;A;CL |
Significance: 0.0052395 |
Significance: 0.0139007 |
| Heart;D;En |
Significance: 0.000879647 |
Significance: 0.00451026 |
| Adrenal;A;CL |
Significance: 0.00458978 |
Significance: 0.00178307 |
| placenta;A;CL |
Significance: 0.00280378 |
Significance: 1.07155e-05 |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.00880149 |
Significance: 0.00221125 |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.00276639 |
Significance: 5.6674399999999994e-05 |
| BRN;PTMN;A;CL |
Significance: 0.00712039 |
Significance: 0.0145852 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00417972 |
Significance: 0.000990652 |
| gamma_delta_TCR;A;CL |
Significance: 0.0008526219999999999 |
Significance: 0.00942619 |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.00389444 |
Significance: 0.0141781 |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 2.39363e-05 |
Significance: 0.0130345 |
| NK;IL2+IL12+;A;CL |
Significance: 0.000670239 |
Significance: 0.0385898 |
| NCR+ILC3;A;CL |
Significance: 0.00119909 |
Significance: 0.0112492 |
| ILC2_Nippo;A;CL |
Significance: 0.00720635 |
Significance: 0.0028752 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.00011556 |
Significance: 0.00295 |
| ILC2;A;CL |
Significance: 0.000139593 |
Significance: 0.030462 |
| Th2_nippo;A;CL |
Significance: 7.187600000000001e-07 |
Significance: 0.00808128 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0376429 |
Significance: 0.00456624 |
| wCH12_drug;A;CL |
Significance: 0.05727919999999999 |
Significance: 0.00221765 |
| ES;v6.5;A;GEO |
Significance: 0.000236255 |
Significance: 0.00247391 |
| Mammary_GLND;A;GEO |
Significance: 0.00173401 |
Significance: 0.000246893 |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.00037394699999999996 |
Significance: 0.010252899999999999 |
| ILC1;A;GEO |
Significance: 0.00416333 |
Significance: 0.017834400000000004 |
| ILC2;A;GEO |
Significance: 0.000299238 |
Significance: 0.027169099999999998 |
| ILC3;A;GEO |
Significance: 0.00300207 |
Significance: 0.00753282 |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.000172586 |
Significance: 0.0329662 |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.00260869 |
Significance: 0.040911 |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 4.52597e-05 |
Significance: 0.0148393 |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.00684832 |
Significance: 0.00238715 |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00624046 |
Significance: 0.0007784239999999999 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00505282 |
Significance: 0.00686912 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00580424 |
Significance: 0.00021852299999999998 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00402905 |
Significance: 0.00650461 |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00858954 |
Significance: 0.00851372 |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00741551 |
Significance: 0.00712925 |
| aB;A;GEO |
Significance: 0.0380015 |
Significance: 0.0467083 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.000166372 |
Significance: 0.000133502 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.00127722 |
Significance: 0.00038376199999999995 |
| Erythroid;Ter119+;A;GEO |
Significance: 3.05872e-09 |
Significance: 3.41388e-07 |
| AML;AE9a;A;GEO |
Significance: 8.692449999999999e-08 |
Significance: 3.0285000000000003e-06 |
| DC_LPS;6h;A;GEO |
Significance: 0.00243892 |
Significance: 0.00564378 |
| DC_LPS;2h;A;GEO |
Significance: 0.00149507 |
Significance: 0.00137854 |
| DC_pBMD;A;GEO |
Significance: 0.000318573 |
Significance: 0.000511651 |
| SKN_EPTHL;A;GEO |
Significance: 0.00988682 |
Significance: 0.00475216 |
| BCK_SKN;A;GEO |
Significance: 0.00415138 |
Significance: 0.0156864 |
| ePyramidal_NRN;A;GEO |
Significance: 0.00536134 |
Significance: 0.00844767 |
| iPV_NRN;A;GEO |
Significance: 0.0008461289999999999 |
Significance: 0.00557669 |
| eCortical_NRN;A;GEO |
Significance: 0.00671772 |
Significance: 0.00437352 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.012554899999999999 |
Significance: 0.00449643 |
| Corticotrope;A;GEO |
Significance: 0.000992587 |
Significance: 0.014348 |
| Melanotrope;A;GEO |
Significance: 0.00357698 |
Significance: 0.011476 |
| Mammary_BptfKO;A;GEO |
Significance: 0.00289246 |
Significance: 0.0055926000000000005 |
| EPP;A;En |
Significance: 6.17059e-09 |
Significance: 4.93338e-05 |
| pErythroblast;A;En |
Significance: 7.256610000000001e-08 |
Significance: 2.04496e-05 |
| MegP;A;En |
Significance: 6.39606e-09 |
Significance: 5.803330000000001e-06 |
| pCMP;A;CL |
Significance: 3.2713e-08 |
Significance: 2.3675599999999997e-06 |
| DC_LPS;4h;A;En |
Significance: 0.000168181 |
Significance: 8.238729999999999e-05 |
| DC;A;En |
Significance: 0.000134295 |
Significance: 0.000526442 |
| ES;ZhBTc4;1;D;GEO |
Significance: 1.41093e-08 |
Significance: 2.2700199999999998e-07 |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.0007532 |
Significance: 0.00338794 |
| LNG;8wks;D;GEO |
Significance: 0.000230996 |
Significance: 0.0318513 |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.011431299999999998 |
Significance: 0.00139973 |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00196957 |
Significance: 0.00031272200000000003 |
| 416B_MP;CD34+;D;GEO |
Significance: 0.00012491 |
Significance: 0.00041692199999999996 |
| WHL_BRN;8wks;D;GEO |
Significance: 0.0036592 |
Significance: 0.00471271 |
| NIH3T3_FBROBLST;D;En |
Significance: 0.011928399999999999 |
Significance: 0.00101538 |
| FBRBLST;8wks;D;En |
Significance: 0.00340405 |
Significance: 0.00251202 |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.00214964 |
Significance: 0.00551706 |
| wES;LVR;E11.5;D.;En |
Significance: 1.44318e-07 |
Significance: 1.15489e-07 |
| LNG;8wks;D;En |
Significance: 0.00018439400000000002 |
Significance: 0.010136299999999999 |
| LNG;P0;D;En |
Significance: 0.00292429 |
Significance: 0.0125703 |
| Heart;P0;D;En |
Significance: 0.00334024 |
Significance: 0.00632742 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 3.2929299999999997e-05 |
Significance: 0.0099762 |
| Adipose;D;En |
Significance: 2.2780100000000002e-05 |
Significance: 0.00432501 |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 1.97136e-06 |
Significance: 3.9175e-06 |
| 416B_MP;CD34+;D;En |
Significance: 2.4313699999999997e-05 |
Significance: 0.00124799 |
| Muller;P12;D;En |
Significance: 0.00457876 |
Significance: 0.00237776 |
| WHL_BRN;8wks;D;En |
Significance: 0.00513577 |
Significance: 0.00428217 |
| wES;Telenchephalon;D;En |
Significance: 0.00574095 |
Significance: 0.0034547 |
| LRG_INTSTN;8wks;D;En |
Significance: 0.00320651 |
Significance: 0.0150871 |
| STMCH;P0;D;En |
Significance: 0.0022946999999999998 |
Significance: 0.00803518 |
| SKLTL_Muscle;8wks;D;En |
Significance: 3.24235e-05 |
Significance: 0.050534699999999995 |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.0085696 |
Significance: 0.000495544 |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 4.91526e-05 |
Significance: 0.000301946 |
| AML;D;En |
Significance: 0.000354994 |
Significance: 0.00130189 |
| CH12.LX;D;En |
Significance: 0.000703371 |
Significance: 0.00747775 |
| MEF.GATA-1-ER;D;En |
Significance: 1.71183e-07 |
Significance: 8.14315e-06 |
| MEL;D;En |
Significance: 2.16479e-07 |
Significance: 0.000126445 |
| NIH3T3;D;En |
Significance: 0.00939424 |
Significance: 0.00383936 |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.00552777 |
Significance: 0.00364977 |
| MN1;D;En |
Significance: 0.0121831 |
Significance: 0.00371352 |
| 3T3-L1;D;En |
Significance: 0.00757863 |
Significance: 0.00263123 |
Unique Cell types only TF-MoDISco finds Bach2: #113
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 1.6420200000000002e-08 | Absent |
| naiveCD8;A;CL |
Significance: 0.00220252 | Absent |
| NK_SPLND;A;CL |
Significance: 0.00343083 | Absent |
| proB;A;CL |
Significance: 2.22112e-06 | Absent |
| matureB;A;CL |
Significance: 0.00308731 | Absent |
| B1_B;A;CL |
Significance: 0.00480557 | Absent |
| plasmaB;A;CL |
Significance: 7.2581299999999996e-06 | Absent |
| aB_LPS;A;CL |
Significance: 7.61672e-05 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.0036506 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.00428375 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.001297 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.0339865 | Absent |
| Mast;A;CL |
Significance: 4.19504e-07 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 1.9735599999999998e-05 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.000908975 | Absent |
| Tfh;A;CL |
Significance: 0.00642711 | Absent |
| aNonTfh;A;CL |
Significance: 0.00214692 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.00121773 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00592437 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00046934099999999996 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00192332 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.00486972 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.00415365 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.00155036 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.004331300000000001 | Absent |
| DP;A;CL |
Significance: 0.000281873 | Absent |
| DP3a;A;CL |
Significance: 1.7679e-07 | Absent |
| ES;E14;A;CL |
Significance: 0.000179233 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.00176731 | Absent |
| LNG;A;CL |
Significance: 0.00132668 | Absent |
| Muscle;A;CL |
Significance: 0.000376639 | Absent |
| Adipose;A;CL |
Significance: 0.00182654 | Absent |
| Mammary;A;CL |
Significance: 0.00520372 | Absent |
| STMCH;A;CL |
Significance: 0.00659841 | Absent |
| PNCRS;A;CL |
Significance: 0.00228136 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.00349125 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00598049 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.000495425 | Absent |
| aB;CD180;A;CL |
Significance: 0.00479571 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 2.42964e-07 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 1.00468e-07 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.00477614 | Absent |
| ILC1;A;CL |
Significance: 0.00188595 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.00139447 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.000135521 | Absent |
| wCH12;A;CL |
Significance: 0.00110443 | Absent |
| CH12;med14;A;CL |
Significance: 0.00412634 | Absent |
| CLP;A;CL |
Significance: 2.0375e-05 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.00211781 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.00212302 | Absent |
| NTRPHL;A;GEO |
Significance: 1.41129e-09 | Absent |
| ES;J1;A;CL |
Significance: 2.54606e-06 | Absent |
| ES;E14;A;GEO |
Significance: 0.00101995 | Absent |
| ES;F1216;A;GEO |
Significance: 0.000672935 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 1.4288e-05 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.00400697 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.00193118 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.05531609999999999 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.00195598 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.00286602 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.00225378 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.00626744 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00271483 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.00844779 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.00599326 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0079165 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.00903316 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.00985532 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0026325 | Absent |
| iNKT;A;GEO |
Significance: 0.00542081 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.00211272 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.00114458 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 0.000357806 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.00543895 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.00442743 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.00577099 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 6.354949999999999e-05 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.00121291 | Absent |
| NPC;F129;A;GEO |
Significance: 0.00103109 | Absent |
| NPC;G4;A;GEO |
Significance: 6.31788e-05 | Absent |
| NPC;Ch13;A;GEO |
Significance: 0.00143856 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.000599824 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.00817041 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 5.25941e-08 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 3.0436400000000002e-06 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 8.23973e-07 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 1.0335e-05 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.000298607 | Absent |
| pMeg;A;En |
Significance: 1.03225e-07 | Absent |
| MegEP;A;CL |
Significance: 5.3605099999999995e-08 | Absent |
| pGMP;A;En |
Significance: 1.22358e-07 | Absent |
| ES;ZhBTc4;2;D;GEO |
Significance: 1.56425e-08 | Absent |
| ES;D0;D;GEO |
Significance: 7.26214e-07 | Absent |
| LVR;8wks;D;GEO |
Significance: 4.44018e-07 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0081431 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.00436624 | Absent |
| apTreg;D;GEO |
Significance: 0.020729499999999998 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 2.49458e-08 | Absent |
| ES;E14;D;En |
Significance: 2.8186e-08 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 3.38683e-09 | Absent |
| KDNY;P0;D;En |
Significance: 0.00433559 | Absent |
| KDNY;8wks;D;En |
Significance: 2.95555e-06 | Absent |
| LVR;8wks;D;En |
Significance: 3.0401e-06 | Absent |
| LVR;P0;D;En |
Significance: 0.00022065 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.000172075 | Absent |
| Heart;8wks;D;En |
Significance: 1.7463499999999998e-06 | Absent |
| RTN;D1;D;En |
Significance: 0.0163358 | Absent |
| CRBLM;D;En |
Significance: 0.00153794 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.00593458 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.00342364 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.0033661999999999997 | Absent |
| Spleen;8wks;D;En |
Significance: 0.0251274 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 1.9643000000000002e-07 | Absent |
