# Parameters
data_name = "Nfia"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Nfia: #24
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 1.01839e-05 |
Significance: 0.00451742 |
| wES;FaceP;E14.5;D;En |
Significance: 2.0543400000000002e-06 |
Significance: 0.000522906 |
| LRG_INTSTN;8wks;D;En |
Significance: 7.649890000000001e-07 |
Significance: 0.00039896699999999996 |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.000377669 |
Significance: 0.028016900000000004 |
| NIH3T3;D;En |
Significance: 2.07129e-05 |
Significance: 0.00189726 |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.00011392700000000001 |
Significance: 0.00164491 |
| MN1;D;En |
Significance: 3.4993699999999995e-06 |
Significance: 0.000206598 |
| 3T3-L1;D;En |
Significance: 1.36672e-05 |
Significance: 0.054350300000000004 |
| NPC;F129;A;GEO |
Significance: 0.00232045 |
Significance: 0.00119801 |
| NPC;Ch13;A;GEO |
Significance: 0.000387472 |
Significance: 0.010232 |
| LNG;8wks;D;GEO |
Significance: 0.00293465 |
Significance: 0.00380055 |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.00205004 |
Significance: 0.00465608 |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.000413781 |
Significance: 0.0145959 |
| NIH3T3_FBROBLST;D;En |
Significance: 2.5278800000000003e-05 |
Significance: 0.013168700000000002 |
| LNG;P0;D;En |
Significance: 1.3984400000000001e-05 |
Significance: 0.00665608 |
| wES;LNG;E14.5;D;En |
Significance: 2.3276699999999998e-06 |
Significance: 0.000590836 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 8.272e-05 |
Significance: 0.0107559 |
| Adipose;D;En |
Significance: 0.00041045599999999996 |
Significance: 0.000175044 |
| wES.Fr_BRN;E14.4;D;En |
Significance: 1.77788e-05 |
Significance: 0.000259657 |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.00264311 |
Significance: 0.00045361699999999996 |
| wES;Md_BRN;E14.4;D;En |
Significance: 1.12897e-05 |
Significance: 0.00613712 |
| Md_BRN;D;En |
Significance: 0.0134828 |
Significance: 0.00948721 |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.00454501 |
Significance: 0.00261621 |
| WHL_BRN;8wks;D;En |
Significance: 0.00468583 |
Significance: 0.00355074 |
Unique Cell types only TF-MoDISco finds Nfia: #152
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 2.4445e-05 | Absent |
| naiveCD8;A;CL |
Significance: 7.113720000000001e-05 | Absent |
| memT;CD4+;A;CL |
Significance: 0.00043469900000000003 | Absent |
| Th17;CD4+;A;CL |
Significance: 1.48536e-05 | Absent |
| NK_SPLND;A;CL |
Significance: 8.215459999999999e-05 | Absent |
| proB;A;CL |
Significance: 7.81543e-06 | Absent |
| preB;A;CL |
Significance: 0.00011711299999999999 | Absent |
| immatureB;A;CL |
Significance: 0.000580067 | Absent |
| matureB;A;CL |
Significance: 0.00335649 | Absent |
| plasmaB;A;CL |
Significance: 8.09663e-05 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.000588665 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.00297594 | Absent |
| Mast;A;CL |
Significance: 6.8706e-05 | Absent |
| BSPHL;A;CL |
Significance: 3.4928300000000002e-06 | Absent |
| NTRPHL;A;CL |
Significance: 1.08845e-05 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.000606338 | Absent |
| Tfh;A;CL |
Significance: 0.00553457 | Absent |
| aNonTfh_mut;A;CL |
Significance: 7.79931e-05 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00132196 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.000250754 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.000319105 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.000142302 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.000136026 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 1.05522e-05 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 1.4111700000000002e-06 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 2.10013e-06 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 9.25559e-05 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.000119301 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.000147737 | Absent |
| DC_BMD;A;CL |
Significance: 0.00037911199999999997 | Absent |
| MCRPHG;A;CL |
Significance: 1.14931e-05 | Absent |
| Erythroblast;A;CL |
Significance: 5.2852799999999996e-05 | Absent |
| DP;A;CL |
Significance: 7.50111e-05 | Absent |
| DP3a;A;CL |
Significance: 7.981289999999999e-06 | Absent |
| DP3b;A;CL |
Significance: 3.02846e-06 | Absent |
| ISP;A;CL |
Significance: 8.127899999999999e-05 | Absent |
| ES;MEF;A;CL |
Significance: 2.1314e-05 | Absent |
| SML_INTSTN;A;CL |
Significance: 3.3559099999999995e-05 | Absent |
| LRG_INTSTN;A;CL |
Significance: 7.009069999999999e-06 | Absent |
| LNG;A;CL |
Significance: 0.00325664 | Absent |
| Muscle;A;CL |
Significance: 0.00441931 | Absent |
| Heart;D;En |
Significance: 0.00434873 | Absent |
| Mammary;A;CL |
Significance: 0.000419669 | Absent |
| Adrenal;A;CL |
Significance: 7.42919e-06 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.0009396680000000001 | Absent |
| STMCH;A;CL |
Significance: 4.9612200000000006e-05 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.000547785 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 1.55216e-05 | Absent |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.00179029 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.000431762 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00123378 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00621443 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.00537452 | Absent |
| restingB;A;CL |
Significance: 0.00022191799999999999 | Absent |
| aB;CD180;A;CL |
Significance: 1.06506e-05 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 2.05215e-06 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 5.8959199999999994e-06 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.000172904 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.000222263 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.000123776 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.000128272 | Absent |
| NCR+ILC3;A;CL |
Significance: 7.63627e-05 | Absent |
| ILC2_Nippo;A;CL |
Significance: 1.06303e-05 | Absent |
| ILC1;A;CL |
Significance: 0.000970446 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.00163277 | Absent |
| ILC2;A;CL |
Significance: 0.000433964 | Absent |
| CLP;A;CL |
Significance: 0.000131292 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.013064700000000002 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.00448549 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.000615881 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 6.93937e-05 | Absent |
| ILC1;A;GEO |
Significance: 0.0006627919999999999 | Absent |
| ILC2;A;GEO |
Significance: 0.00018893599999999998 | Absent |
| ILC3;A;GEO |
Significance: 9.32035e-05 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.0068467 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.000210725 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 1.50641e-06 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.000174153 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.00181411 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.00151399 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.00016137 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.000331425 | Absent |
| preB_BMD;A;GEO |
Significance: 0.00036589 | Absent |
| B;B220_CD43;A;GEO |
Significance: 2.54661e-05 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.00021827900000000002 | Absent |
| AML;AE9a;A;GEO |
Significance: 2.49693e-07 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 7.3554e-06 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 0.000344725 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0208652 | Absent |
| NPC;G4;A;GEO |
Significance: 0.000184358 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.0008066610000000001 | Absent |
| ePyramidal_NRN;A;GEO |
Significance: 0.049098199999999995 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.000135834 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.00227214 | Absent |
| eCortical_NRN;A;GEO |
Significance: 0.0187267 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.0009132 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.000197994 | Absent |
| Corticotrope;A;GEO |
Significance: 0.000311335 | Absent |
| Melanotrope;A;GEO |
Significance: 0.00039186300000000005 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.00165317 | Absent |
| EPP;A;En |
Significance: 1.8493e-05 | Absent |
| MegEP;A;CL |
Significance: 5.703819999999999e-06 | Absent |
| pErythroblast;A;En |
Significance: 0.00012262700000000002 | Absent |
| MegP;A;En |
Significance: 2.02701e-05 | Absent |
| pCMP;A;CL |
Significance: 6.511669999999999e-07 | Absent |
| DC_LPS;4h;A;En |
Significance: 4.38386e-07 | Absent |
| DC;A;En |
Significance: 1.49899e-05 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.00054262 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.000268785 | Absent |
| LVR;8wks;D;GEO |
Significance: 1.2926700000000001e-05 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 6.54815e-05 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 4.44051e-07 | Absent |
| apCD4Eff;D;GEO |
Significance: 1.39499e-06 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 5.6087900000000006e-06 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 2.7781700000000002e-05 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.00261406 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.000114801 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.000274843 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.00019905200000000002 | Absent |
| KDNY;P0;D;En |
Significance: 0.000278009 | Absent |
| KDNY;8wks;D;En |
Significance: 0.00016123100000000002 | Absent |
| LVR;8wks;D;En |
Significance: 0.0007756560000000001 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 1.4283600000000001e-06 | Absent |
| LVR;P0;D;En |
Significance: 2.4944499999999998e-05 | Absent |
| LNG;8wks;D;En |
Significance: 0.00018680900000000002 | Absent |
| Heart;8wks;D;En |
Significance: 0.00819172 | Absent |
| Heart;P0;D;En |
Significance: 4.1290199999999995e-06 | Absent |
| RTN;D1;D;En |
Significance: 7.44003e-06 | Absent |
| wES;RTN;E11.5;D;En |
Significance: 0.0016202999999999999 | Absent |
| CRBLM;D;En |
Significance: 9.57506e-05 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 3.92352e-05 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 1.10509e-05 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.000483344 | Absent |
| Muller;P12;D;En |
Significance: 6.0600099999999994e-06 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.00391769 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 0.00431075 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.00210489 | Absent |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.00193959 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.00211882 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.000496328 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 6.38562e-06 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.00213762 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 1.93498e-05 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.000302483 | Absent |
| STMCH;P0;D;En |
Significance: 6.33736e-06 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.00522211 | Absent |
| Spleen;8wks;D;En |
Significance: 9.42305e-06 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 1.94422e-06 | Absent |
| AML;D;En |
Significance: 1.41205e-05 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 9.52449e-06 | Absent |
| MEL;D;En |
Significance: 1.91051e-05 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 9.086449999999999e-08 | Absent |
