In [1]:
# Parameters
data_name = "Pdx1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:27:29,811 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Pdx1: Motif: M09571_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Pdx1: #26

Cell typeModiscoHomer
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.028588

/

Pattern: metacluster_0/pattern_5

Significance: 0.0495945

Pattern: motif4.motif

Significance: 0.0368469

/

Pattern: motif8.motif

Significance: 0.05782809999999999

wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.021837

/

Pattern: metacluster_0/pattern_3

Significance: 0.04394530000000001

Pattern: motif3.motif

Significance: 0.0276257

BL_CN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.059325800000000005

Pattern: motif13.motif

Significance: 0.027768400000000002

wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0245026

Pattern: motif16.motif

Significance: 0.0303558

wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 4.49438e-05

/

Pattern: metacluster_0/pattern_22

Significance: 0.0240777

/

Pattern: metacluster_0/pattern_25

Significance: 0.00379006

Pattern: motif4.motif

Significance: 0.00239477

wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 2.59746e-05

/

Pattern: metacluster_0/pattern_18

Significance: 0.026329200000000004

Pattern: motif6.motif

Significance: 2.91508e-05

npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.037955800000000005

/

Pattern: metacluster_0/pattern_6

Significance: 0.0514618

Pattern: motif5.motif

Significance: 0.000116364

npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.034482900000000004

/

Pattern: metacluster_0/pattern_7

Significance: 9.52777e-06

Pattern: motif7.motif

Significance: 0.000966341

BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0169049

Pattern: motif9.motif

Significance: 0.05217

wES.CRNL_NRL_CRST;E10.5;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0515254

Pattern: motif3.motif

Significance: 0.0163811

iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.0460722

Pattern: motif3.motif

Significance: 0.055521100000000004

G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_14

Significance: 0.0156803

Pattern: motif13.motif

Significance: 0.0583386

ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00505379

Pattern: motif15.motif

Significance: 0.0126792

wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.0102555

Pattern: motif2.motif

Significance: 0.00956293

KDNY;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00440468

Pattern: motif4.motif

Significance: 0.0555196

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.0189709

Pattern: motif6.motif

Significance: 0.0346907

RTN;D1;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00832223

Pattern: motif2.motif

Significance: 0.010760200000000001

wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.0102495

Pattern: motif3.motif

Significance: 0.00942808

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_0

Significance: 0.00200749

/

Pattern: metacluster_0/pattern_5

Significance: 0.00428607

Pattern: motif2.motif

Significance: 0.00172487

Muller;P12;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0151756

Pattern: motif4.motif

Significance: 0.0168046

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.012521899999999999

Pattern: motif2.motif

Significance: 0.0112803

Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 0.0506334

Pattern: motif10.motif

Significance: 0.0386823

wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.053456399999999994

/

Pattern: metacluster_0/pattern_8

Significance: 0.046923

Pattern: motif3.motif

Significance: 0.0256959

wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.022073699999999998

Pattern: motif6.motif

Significance: 0.026877099999999998

Md_BRN;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0442429

Pattern: motif14.motif

Significance: 0.056552599999999995

wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_0

Significance: 0.00910534

Pattern: motif2.motif

Significance: 0.011403299999999998

Unique Cell types only TF-MoDISco finds Pdx1: #23

Cell typeModiscoHomer
MPP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.007992

Absent
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.029044099999999996

/

Pattern: metacluster_1/pattern_13

Significance: 0.0554302

Absent
wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.0530513

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.05719490000000001

Absent
AML;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.00705094

Absent
npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_16

Significance: 0.016744099999999998

Absent
npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.021965400000000003

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 8.40832e-05

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 5.95864e-06

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_11

Significance: 0.038281699999999995

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 6.53256e-08

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.048333999999999995

Absent
NPC;G4;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.0431018

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0476263

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.011029

Absent
Adrenal;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.023544299999999997

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.010979299999999999

Absent
NIH3T3_FBROBLST;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.00541648

Absent
CLP;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.0161588

Absent
KDNY;8wks;D;En

Pattern: metacluster_1/pattern_19

Significance: 0.00579289

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_22

Significance: 0.025000099999999997

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.0201468

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.028377299999999998

Absent
Unique Cell types only Homer finds Pdx1: #2

Cell typeModiscoHomer
CN_PHT_RCPTR;A;GEOAbsent

Pattern: motif8.motif

Significance: 0.0316716

Melanotrope;A;GEOAbsent

Pattern: motif17.motif

Significance: 0.0375069