In [1]:
# Parameters
data_name = "Nr2c2"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:25:33,445 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Nr2c2: Motif: M09303_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Nr2c2: #14

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.00161204

Pattern: motif17.motif

Significance: 1.23395e-07

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.0378903

/

Pattern: metacluster_0/pattern_17

Significance: 6.8862600000000006e-09

Pattern: motif18.motif

Significance: 6.5522e-08

LVR;8wks;D;En

Pattern: metacluster_0/pattern_0

Significance: 8.623319999999999e-07

Pattern: motif2.motif

Significance: 4.4236499999999996e-05

ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.0151429

Pattern: motif14.motif

Significance: 0.0400087

LRG_INTSTN;8wks;D;En

Pattern: metacluster_1/pattern_2

Significance: 2.27128e-05

Pattern: motif3.motif

Significance: 0.000851723

Adipocyte_3T3-L1D;C57BL6;D8;D;En

Pattern: metacluster_1/pattern_9

Significance: 4.52752e-08

Pattern: motif10.motif

Significance: 3.31469e-05

LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_0

Significance: 5.32854e-07

/

Pattern: metacluster_1/pattern_17

Significance: 0.0180207

Pattern: motif1.motif

Significance: 5.76691e-05

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.0034276

Pattern: motif19.motif

Significance: 1.10945e-07

SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_3

Significance: 1.1648399999999998e-05

Pattern: motif5.motif

Significance: 0.00626326

LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_1

Significance: 4.51962e-05

Pattern: motif2.motif

Significance: 0.00531345

placenta;A;CL

Pattern: metacluster_0/pattern_11

Significance: 2.0974900000000002e-08

Pattern: motif12.motif

Significance: 5.28271e-07

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.015326499999999998

/

Pattern: metacluster_0/pattern_17

Significance: 1.36607e-09

Pattern: motif20.motif

Significance: 2.11291e-07

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.0282837

/

Pattern: metacluster_0/pattern_16

Significance: 6.5834e-10

Pattern: motif15.motif

Significance: 0.03524

KDNY;8wks;D;En

Pattern: metacluster_1/pattern_1

Significance: 2.12976e-06

Pattern: motif2.motif

Significance: 0.00014547

Unique Cell types only TF-MoDISco finds Nr2c2: #33

Cell typeModiscoHomer
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.00322534

Absent
wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.040987300000000004

Absent
wES;Hnd_lmb;E11.5;D;En

Pattern: metacluster_0/pattern_15

Significance: 0.0492789

/

Pattern: metacluster_0/pattern_22

Significance: 0.00504075

/

Pattern: metacluster_0/pattern_23

Significance: 2.89113e-09

Absent
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.017946200000000002

Absent
STMCH;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.00811271

Absent
416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.0539738

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_14

Significance: 0.039723800000000004

/

Pattern: metacluster_0/pattern_17

Significance: 1.8485299999999998e-09

Absent
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.0165243

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_8

Significance: 0.00806359

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00170432

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_12

Significance: 0.00139666

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.000508381

/

Pattern: metacluster_0/pattern_15

Significance: 6.50707e-10

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_21

Significance: 0.0208419

/

Pattern: metacluster_0/pattern_24

Significance: 5.57159e-08

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_13

Significance: 0.00413336

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_20

Significance: 2.86253e-08

/

Pattern: metacluster_0/pattern_21

Significance: 1.94747e-08

/

Pattern: metacluster_0/pattern_22

Significance: 0.0222777

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.0553138

Absent
CD4+CD8-TCR+CD25-Foxp3+;A;CL

Pattern: metacluster_1/pattern_23

Significance: 0.00725964

Absent
CD4+CD8-TCR+CD25+Foxp3+;A;CL

Pattern: metacluster_1/pattern_14

Significance: 0.0520505

Absent
ThMS_MEC;Aire++;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0039038000000000002

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_21

Significance: 0.00346761

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_23

Significance: 0.0333389

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0154725

Absent
416B_MP;CD34+;D;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.032618799999999996

Absent
ES;129S1_SVImJ_CJ7;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00941726

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_15

Significance: 0.0162818

Absent
ES;C57BL_6J;R1;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.0121886

Absent
KDNY;P0;D;En

Pattern: metacluster_1/pattern_23

Significance: 0.00021129299999999998

Absent
wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_15

Significance: 3.89831e-07

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.0234208

Absent
LVR;P0;D;En

Pattern: metacluster_1/pattern_10

Significance: 7.51891e-05

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_15

Significance: 0.0237487

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_16

Significance: 0.0369089

Absent
T_LCMV;CD8+;D35;A;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.00380506

Absent
Unique Cell types only Homer finds Nr2c2: #1

Cell typeModiscoHomer
DC_BMD;A;CLAbsent

Pattern: motif13.motif

Significance: 0.013642700000000002