In [1]:
# Parameters
data_name = "Smad4"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:34:36,137 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Smad4: Motif: M09382_2.00



Forward PWM

Reverse PWM

No Cell types that both TF-MoDISco and Homer finds Smad4
Unique Cell types only TF-MoDISco finds Smad4: #1

Cell typeModiscoHomer
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_22

Significance: 0.020510900000000002

Absent
No Cell types only Homer finds Smad4