In [1]:
# Parameters
data_name = "Sox12"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:35:25,124 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Sox12: Motif: M00205_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Sox12: #11

Cell typeModiscoHomer
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0355031

Pattern: motif3.motif

Significance: 0.0502769

npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0301173

Pattern: motif4.motif

Significance: 0.016166200000000002

wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0299111

Pattern: motif3.motif

Significance: 0.00679184

npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0408737

Pattern: motif4.motif

Significance: 0.0115453

ES;ZhBTc4;2;D;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00724777

Pattern: motif7.motif

Significance: 0.0219407

ES;E14;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.00709024

Pattern: motif7.motif

Significance: 0.00206934

ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00180815

Pattern: motif9.motif

Significance: 0.00429588

wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_2

Significance: 0.0356894

Pattern: motif7.motif

Significance: 0.0187649

npES;3rd_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.0222572

Pattern: motif3.motif

Significance: 0.0230945

npES;3rd_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 0.0275433

Pattern: motif3.motif

Significance: 0.00759905

wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0169918

Pattern: motif3.motif

Significance: 0.019452599999999997

Unique Cell types only TF-MoDISco finds Sox12: #32

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_18

Significance: 0.0232168

Absent
wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.0412526

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_1

Significance: 0.0255399

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0366986

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.021544999999999998

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_3

Significance: 0.0501152

Absent
BCK_SKN;A;GEO

Pattern: metacluster_0/pattern_23

Significance: 0.05367280000000001

Absent
NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.0167069

Absent
NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.029158

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_18

Significance: 0.00577289

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_17

Significance: 0.0279226

Absent
ES;ZhBTc4;untreated;A;GEO

Pattern: metacluster_1/pattern_4

Significance: 0.00361921

Absent
npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO

Pattern: metacluster_1/pattern_11

Significance: 0.013658400000000001

Absent
ES;JM8.N4;Asynch;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.00742897

Absent
Mammary;A;CL

Pattern: metacluster_0/pattern_10

Significance: 0.0347771

Absent
Mammary_BptfKO;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0296178

Absent
ES;JM8.N4;Mitosis;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.0239156

Absent
ES;ZhBTc4;1;D;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.0517068

Absent
ES;D0;D;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0055819

Absent
ES;E14;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.05103680000000001

Absent
ES;J1;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00245019

Absent
ES;E14;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0509398

Absent
ES;F1216;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 0.00212072

Absent
ES;129SV_Jae_C57BL6J;A;GEO

Pattern: metacluster_1/pattern_6

Significance: 0.00331705

Absent
ES;v6.5;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0163699

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_19

Significance: 0.016687900000000002

Absent
RTN;D1;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.0136901

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_5

Significance: 0.030324

Absent
Muller;P12;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.05375980000000001

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.05992190000000001

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.0387134

Absent
wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.0530675

Absent
No Cell types only Homer finds Sox12